mRNA_H-paniculata_contig339.9054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig339.9054.1
Unique NamemRNA_H-paniculata_contig339.9054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig339.9054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig339contigH-paniculata_contig339:6823..7986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1132
Cds size816
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig339.9054.1prot_H-paniculata_contig339.9054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig339 7139..7986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.7318766-UTR-H-paniculata_contig339:6822..71381622930044.7318766-UTR-H-paniculata_contig339:6822..7138Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig339 6823..7138 +
1691481123.9118466-UTR-H-paniculata_contig339:6822..71381691481123.9118466-UTR-H-paniculata_contig339:6822..7138Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig339 6823..7138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.754104-CDS-H-paniculata_contig339:7138..72311622930044.754104-CDS-H-paniculata_contig339:7138..7231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig339 7139..7231 +
1691481123.9243915-CDS-H-paniculata_contig339:7138..72311691481123.9243915-CDS-H-paniculata_contig339:7138..7231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig339 7139..7231 +
1622930044.7736075-CDS-H-paniculata_contig339:7263..79861622930044.7736075-CDS-H-paniculata_contig339:7263..7986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig339 7264..7986 +
1691481123.9339356-CDS-H-paniculata_contig339:7263..79861691481123.9339356-CDS-H-paniculata_contig339:7263..7986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig339 7264..7986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig339.9054.1

>prot_H-paniculata_contig339.9054.1 ID=prot_H-paniculata_contig339.9054.1|Name=mRNA_H-paniculata_contig339.9054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MGLRCKQTAKSKLSMQSGRRRWGTTRWERVWAPFVPLCFDGRLVYALLPS
LATGRPAVAVVDPANGFRAAHPIIDLHRPAMMPDTMMQTSSKSYDDGNGL
TNSEEWPWWKGRAAMPEVRTYCNGDYFVVCWIRDTDAAGANRPSRLSDVR
QSEARLGLRADPVESANTTVFRLSTGECESNRCGAAQFQRIPLFVGNDSS
NDVISRCSLRRQMEPDESSCAAELVVLLSQKSKAGHDPSLDGPLTWGGML
HSLRVGKHNGPVHCTKNIQQPL
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mRNA from alignment at H-paniculata_contig339:6823..7986+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig339.9054.1 ID=mRNA_H-paniculata_contig339.9054.1|Name=mRNA_H-paniculata_contig339.9054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig339:6823..7986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGAGTAGGCTTCGTGGCGACGACGGCAAGACCTTGCGTCTTTTACC
GGGTTCTTTGCGTCGGGTTGTTGGACAGTATTTGCTAACCGATCTCACTA
GTGTACCTGGAGACCGGCGTGGCGGGAGAAAAGGATTTGTGGTTGCCATG
GGCAACCGCGTGTACCTACAAGCACGAGGCTGCATGCCGTCTCACCGATT
TTTGACTTTGCGCGCGTCGGATCTGGCGGTGGATGGAATCGTCGATGCTC
CGAGTTTGATGTTACCACACTCTGCAGTCTCGCCGTCGGTACTGGAGGCC
ACAGGGGGCCGTTCGAATGGGTCTCCGCTGCAAACAGACGGCGAAATCAA
AGCTGAGTATGCAGAGTGGGAGGAGAAGGTGGGGGACGACGCGGTGGGAG
CGCGTGTGGGAAGTAAGCAGGAGAACGCCGAATCAACTGCTGCTCCATTC
GTTCCATTATGCTTCGACGGTAGACTGGTGTATGCACTGTTACCGTCGCT
GGCCACGGGTAGGCCTGCCGTTGCTGTTGTGGACCCTGCCAACGGCTTCA
GAGCAGCCCATCCCATCATTGACTTGCATAGGCCCGCCATGATGCCAGAT
ACAATGATGCAGACTTCGAGTAAATCCTACGATGATGGGAATGGGTTGAC
GAACTCAGAGGAATGGCCGTGGTGGAAAGGAAGGGCGGCCATGCCGGAGG
TACGGACTTACTGTAACGGAGATTATTTTGTGGTGTGCTGGATTCGAGAC
ACTGATGCAGCAGGGGCGAATCGTCCTTCACGCCTGAGCGACGTGAGGCA
GTCGGAGGCGCGGCTTGGCCTTCGCGCCGACCCCGTTGAATCCGCAAACA
CGACGGTATTCCGGTTGTCGACGGGAGAATGTGAATCCAATAGATGTGGC
GCAGCGCAATTCCAGCGGATACCCTTATTCGTTGGGAATGATTCGTCAAA
CGATGTGATTTCCCGATGTTCCCTGCGCCGGCAGATGGAACCCGACGAGA
GTTCCTGTGCAGCCGAGCTAGTCGTCCTCTTGAGCCAAAAAAGCAAAGCC
GGACATGACCCCAGTTTGGATGGACCATTGACTTGGGGGGGAATGTTGCA
CAGTCTTCGTGTAGGCAAGCATAACGGACCGGTACATTGCACCAAGAACA
TCCAACAGCCCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig339:6823..7986+

>mRNA_H-paniculata_contig339.9054.1 ID=mRNA_H-paniculata_contig339.9054.1|Name=mRNA_H-paniculata_contig339.9054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig339:6823..7986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCTCCGCTGCAAACAGACGGCGAAATCAAAGCTGAGTATGCAGAG
TGGGAGGAGAAGGTGGGGGACGACGCGGTGGGAGCGCGTGTGGATGGGTC
TCCGCTGCAAACAGACGGCGAAATCAAAGCTGAGTATGCAGAGTGGGAGG
AGAAGGTGGGGGACGACGCGGTGGGAGCGCGTGTGGGCTCCATTCGTTCC
ATTATGCTTCGACGGTAGACTGGTGTATGCACTGTTACCGTCGCTGGCCA
CGGGTAGGCCTGCCGTTGCTGTTGTGGACCCTGCCAACGGCTTCAGAGCA
GCCCATCCCATCATTGACTTGCATAGGCCCGCCATGATGCCAGATACAAT
GATGCAGACTTCGAGTAAATCCTACGATGATGGGAATGGGTTGACGAACT
CAGAGGAATGGCCGTGGTGGAAAGGAAGGGCGGCCATGCCGGAGGTACGG
ACTTACTGTAACGGAGATTATTTTGTGGTGTGCTGGATTCGAGACACTGA
TGCAGCAGGGGCGAATCGTCCTTCACGCCTGAGCGACGTGAGGCAGTCGG
AGGCGCGGCTTGGCCTTCGCGCCGACCCCGTTGAATCCGCAAACACGACG
GTATTCCGGTTGTCGACGGGAGAATGTGAATCCAATAGATGTGGCGCAGC
GCAATTCCAGCGGATACCCTTATTCGTTGGGAATGATTCGTCAAACGATG
TGATTTCCCGATGTTCCCTGCGCCGGCAGATGGAACCCGACGAGAGTTCC
TGTGCAGCCGAGCTAGTCGTCCTCTTGAGCCAAAAAAGCAAAGCCGGACA
TGACCCCAGTTTGGATGGACCATTGACTTGGGGGGGAATGTTGCACAGTC
TTCGTGTAGGCAAGCATAACGGACCGGTACATTGCACCAAGAACATCCAA
CAGCCCCTGGCTCCATTCGTTCCATTATGCTTCGACGGTAGACTGGTGTA
TGCACTGTTACCGTCGCTGGCCACGGGTAGGCCTGCCGTTGCTGTTGTGG
ACCCTGCCAACGGCTTCAGAGCAGCCCATCCCATCATTGACTTGCATAGG
CCCGCCATGATGCCAGATACAATGATGCAGACTTCGAGTAAATCCTACGA
TGATGGGAATGGGTTGACGAACTCAGAGGAATGGCCGTGGTGGAAAGGAA
GGGCGGCCATGCCGGAGGTACGGACTTACTGTAACGGAGATTATTTTGTG
GTGTGCTGGATTCGAGACACTGATGCAGCAGGGGCGAATCGTCCTTCACG
CCTGAGCGACGTGAGGCAGTCGGAGGCGCGGCTTGGCCTTCGCGCCGACC
CCGTTGAATCCGCAAACACGACGGTATTCCGGTTGTCGACGGGAGAATGT
GAATCCAATAGATGTGGCGCAGCGCAATTCCAGCGGATACCCTTATTCGT
TGGGAATGATTCGTCAAACGATGTGATTTCCCGATGTTCCCTGCGCCGGC
AGATGGAACCCGACGAGAGTTCCTGTGCAGCCGAGCTAGTCGTCCTCTTG
AGCCAAAAAAGCAAAGCCGGACATGACCCCAGTTTGGATGGACCATTGAC
TTGGGGGGGAATGTTGCACAGTCTTCGTGTAGGCAAGCATAACGGACCGG
TACATTGCACCAAGAACATCCAACAGCCCCTG
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