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Homology
BLAST of mRNA_H-paniculata_contig33895.9052.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.010e-37 Identity = 91/210 (43.33%), Postives = 109/210 (51.90%), Query Frame = 1
Query: 49 QVMDPPPPRDTATVAVPEQAPQPLPEREIACMYCRSSQGALLDCGVTETGVGPGRCRRHREQTTAAGWAAVGSS----------VCHRRFHFLCGWFAGAYVKLSNADHSFTRGARNVTGRMDRWPVRGEPKHGFPAGMLVEIRCLDHSKGPGGR--------------------------GEL------GTTVEAQAKLRGKYRLKAEP 552
+V PPPP VP++ + +P R C +C + GALLDCG+TE GVG G C RH E G + G S VC +RFHFLC WFAGAYVK+ D SFTRG R ++G M+ WP GEP++GFPAGM VE RCL+HS G GR GE GTT E Q LR KYR+K P
Sbjct: 1100 EVTRPPPP-------VPQE--RNVPNRVFECCFCGVADGALLDCGITECGVGGGGCLRHGEGPVLGGGGSGGPSADGNLGDGRPVCGKRFHFLCAWFAGAYVKVDVTDPSFTRGERGLSGDMEAWPAPGEPRYGFPAGMSVEARCLEHSVGAPGRKGAPAEAAAVQQLADADALPPGTISLGETAGGVVRGTTWEEQRDLRNKYRMKDRP 1300
BLAST of mRNA_H-paniculata_contig33895.9052.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.720e-10 Identity = 51/139 (36.69%), Postives = 64/139 (46.04%), Query Frame = 1
Query: 340 DHSFTRGARNVTGRMDRWPVRGEPKHGFPAGMLVEIRCLDHSKGPGGR--------------------------GEL------GTTVEAQAKLRGKYRLKAEPKCKKPSAKRKKPAAKTTAEPKRGEAQVTKGLEAARV 660
D SFT G R ++G M WP GE ++GFPAGM VE RCL+HS G GR GE GTT E Q LR KYR+K +P + K+KK A+ E K+ E + + RV
Sbjct: 1000 DPSFTMGERGLSGDMGAWPAAGEARYGFPAGMSVEARCLEHSVGAPGRKGAPAEAAAVQQLADADALPPGTISLGETAGGVVRGTTCEEQRDLRNKYRIKFQPAWQVEGKKKKKTKAQLKREQKKAEREKQSNVSTMRV 1138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.9 |
| Seed ortholog evalue | 3.4e-11 |
| Seed eggNOG ortholog | 2880.D7FV42 |
| Preferred name | PHF14 |
| KEGG ko | ko:K02606,ko:K11380,ko:K22156,ko:K22184 |
| KEGG Pathway | ko04110,ko04111,ko04113,map04110,map04111,map04113 |
| KEGG Module | M00284 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141 |
| EggNOG free text desc. | negative regulation of platelet-derived growth factor receptor-alpha signaling pathway |
| EggNOG OGs | COG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759 |
| COG Functional cat. | BQ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03032,ko03036 |
| Exons | 4 |
| Model size | 859 |
| Cds size | 828 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33895.9052.1 >prot_H-paniculata_contig33895.9052.1 ID=prot_H-paniculata_contig33895.9052.1|Name=mRNA_H-paniculata_contig33895.9052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MEVEVDQVMDPPPPRDTATVAVPEQAPQPLPEREIACMYCRSSQGALLDC
GVTETGVGPGRCRRHREQTTAAGWAAVGSSVCHRRFHFLCGWFAGAYVKL
SNADHSFTRGARNVTGRMDRWPVRGEPKHGFPAGMLVEIRCLDHSKGPGG
RGELGTTVEAQAKLRGKYRLKAEPKCKKPSAKRKKPAAKTTAEPKRGEAQ
VTKGLEAARVVAAAAAGSQQSAPAATRKNNRKGGGGGGEASRGGLAARVP
QSYWARRTAAPSPASAICGGRRQRGQ back to topmRNA from alignment at H-paniculata_contig33895:647..2480+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig33895.9052.1 ID=mRNA_H-paniculata_contig33895.9052.1|Name=mRNA_H-paniculata_contig33895.9052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1834bp|location=Sequence derived from alignment at H-paniculata_contig33895:647..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGTATCCAGCAGCAGCACTATGTGGAGATGGAGGTGGAGGTGGACCA
AGTCATGGATCCTCCTCCGCCTAGAGACACAGCCACCGTAGCCGTGCCCG
AGCAGGCGCCGCAGCCTCTTCCAGAGCGAGAGATCGCGTGCATGTACTGT
AGGTCGTCTCAAGGAGCCTTGCTAGACTGCGGCGTAACGGAAACCGGGGT
CGGCCCCGGCCGCTGCAGACGGCACCGTGAACAAACGACGGCGGCGGGGT
GGGCGGCGGTGGGTGCAGCAGCAGGAACAACAACAATAATCAGAGCTCCG
TTTGTCACAGACGCTTTCACTTCCTATGTGGGTGGTTCGCCGGCGCGTAT
GTGAAGCTTAGCAACGCGGATCATTCGTTCACGAGGGGGGCTCGAAATGT
GACGGGGAGGATGGACAGGTGGCCAGTGAGGGGGGAGCCCAAGCATGGCT
TTCCTGCCGGCATGCTGGTTGAAATTCGATGTCTGGATCACTCGAAGGGG
CCCGGCGGGAGAGGTGAACTGGGAACGACCGTGGAAGCGCAGGCTAAACT
TCGCGGGAAGTACCGGCTGAAGGTTGGTGTTTTCCACGCTGGCCCGTGTG
TTCTAAGCGTATGTTGGCATATGGTGCCGGTAGTTGGTTGGGCTGGTTGT
TTGTACTGCCGAAGTGAGGTAGGTATCTCGTGTGTTTTTGCGCGCCGGGA
GCAACGAAGCAAAATAGCGTGCACGCACAGTGAGTAGGTAGCCTATTTCT
GTGTTCTTTGTCGAGGCGCTGAACTGCTTGCTCTATATCTGTTGCTGTTG
GCTTGTACCCTGGCAGAAACGCGAATATCTTGATGTCGTGTCTTGATTTG
TGCTTTCTCTCTTACTCCAGTTATTATCCGTTTCGTGCCTCAAAAACAAC
AGGCGGAACCCAAATGTAAGAAACCAAGTGCAAAGCGAAAGAAGCCTGCA
GCCAAGACCACGGTGCGTGTATTTCTTGTTTTTTTATCTGATTATCATAT
GTTTGCGCGACAAATGAAAGCCCCGGTTTGGCAGCGTGCGACGAACTTCG
CGGCAATCGCTTCTACACATGGTGGCAGATATGTTTGATGTTGAGAAGTC
GATTGTGATGTTGCCACCGTGCTATGAGCAACCGTCGTCGCCATCAACAG
CGTTCGCACACATGGCATGTAAGTGAATGAATGGCTTGTCCTCTCCCAAT
AACGCTTTGTTCTACTTTATCGACATGACGTTTATCCCTCTTATTGATGT
AATTTATTCAATCCCCCCCCTCCCCTTGACTCTCTTTTTCACTTCTGTCA
TAATACCTTCTATTACGTTGCGCCGTGTTGCTGAACAGTAGGTCGTTGTT
TTTTTTCTTGAAAGGTTTGTTTGTCGATACTCATGATGAACAACATTCTC
CTCTCATGTTTTATTCGGAGGAGGGGGAGGCGGAGGTACTCATTTTTTGC
CTGCTGTAGTTGTTCGATCATTAACCACGCGTCCTCGGGAAGATAGAGCT
TTGTCCTATCAAAGCGATTAATTCAAGATGAACCCCCCACGTTCACCTGG
GATATGACGCCCACCCCCCGTCCTCCCAGGCTGAACCTAAACGTGGGGAA
GCCCAAGTGACAAAGGGGCTCGAAGCGGCTCGAGTCGTCGCTGCCGCCGC
TGCCGGATCCCAACAGTCCGCGCCCGCGGCCACTCGCAAGAACAACCGGA
AGGGCGGCGGCGGCGGCGGCGAAGCCAGTCGCGGAGGTCTCGCGGCACGG
GTGCCCCAAAGCTATTGGGCGCGTCGAACAGCAGCACCCTCCCCTGCCTC
CGCCATCTGCGGGGGGCGACGACAACGTGGGCAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig33895:647..2480+ >mRNA_H-paniculata_contig33895.9052.1 ID=mRNA_H-paniculata_contig33895.9052.1|Name=mRNA_H-paniculata_contig33895.9052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig33895:647..2480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTGGAGGTGGACCAAGTCATGGATCCTCCTCCGCCTAGAGACAC
AGCCACCGTAGCCGTGCCCGAGCAGGCGCCGCAGCCTCTTCCAGAGCGAG
AGATCGCGTGCATGTACTGTAGGTCGTCTCAAGGAGCCTTGCTAGACTGC
GGCGTAACGGAAACCGGGGTCGGCCCCGGCCGCTGCAGACGGCACCGTGA
ACAAACGACGGCGGCGGGGTGGGCGGCGGTGGGTATGGAGGTGGAGGTGG
ACCAAGTCATGGATCCTCCTCCGCCTAGAGACACAGCCACCGTAGCCGTG
CCCGAGCAGGCGCCGCAGCCTCTTCCAGAGCGAGAGATCGCGTGCATGTA
CTGTAGGTCGTCTCAAGGAGCCTTGCTAGACTGCGGCGTAACGGAAACCG
GGGTCGGCCCCGGCCGCTGCAGACGGCACCGTGAACAAACGACGGCGGCG
GGGTGGGCGGCGGTGGGTAGCTCCGTTTGTCACAGACGCTTTCACTTCCT
ATGTGGGTGGTTCGCCGGCGCGTATGTGAAGCTTAGCAACGCGGATCATT
CGTTCACGAGGGGGGCTCGAAATGTGACGGGGAGGATGGACAGGTGGCCA
GTGAGGGGGGAGCCCAAGCATGGCTTTCCTGCCGGCATGCTGGTTGAAAT
TCGATGTCTGGATCACTCGAAGGGGCCCGGCGGGAGAGGTGAACTGGGAA
CGACCGTGGAAGCGCAGGCTAAACTTCGCGGGAAGTACCGGCTGAAGAGC
TCCGTTTGTCACAGACGCTTTCACTTCCTATGTGGGTGGTTCGCCGGCGC
GTATGTGAAGCTTAGCAACGCGGATCATTCGTTCACGAGGGGGGCTCGAA
ATGTGACGGGGAGGATGGACAGGTGGCCAGTGAGGGGGGAGCCCAAGCAT
GGCTTTCCTGCCGGCATGCTGGTTGAAATTCGATGTCTGGATCACTCGAA
GGGGCCCGGCGGGAGAGGTGAACTGGGAACGACCGTGGAAGCGCAGGCTA
AACTTCGCGGGAAGTACCGGCTGAAGGCGGAACCCAAATGTAAGAAACCA
AGTGCAAAGCGAAAGAAGCCTGCAGCCAAGACCACGGCGGAACCCAAATG
TAAGAAACCAAGTGCAAAGCGAAAGAAGCCTGCAGCCAAGACCACGGCTG
AACCTAAACGTGGGGAAGCCCAAGTGACAAAGGGGCTCGAAGCGGCTCGA
GTCGTCGCTGCCGCCGCTGCCGGATCCCAACAGTCCGCGCCCGCGGCCAC
TCGCAAGAACAACCGGAAGGGCGGCGGCGGCGGCGGCGAAGCCAGTCGCG
GAGGTCTCGCGGCACGGGTGCCCCAAAGCTATTGGGCGCGTCGAACAGCA
GCACCCTCCCCTGCCTCCGCCATCTGCGGGGGGCGACGACAACGTGGGCA
GGCTGAACCTAAACGTGGGGAAGCCCAAGTGACAAAGGGGCTCGAAGCGG
CTCGAGTCGTCGCTGCCGCCGCTGCCGGATCCCAACAGTCCGCGCCCGCG
GCCACTCGCAAGAACAACCGGAAGGGCGGCGGCGGCGGCGGCGAAGCCAG
TCGCGGAGGTCTCGCGGCACGGGTGCCCCAAAGCTATTGGGCGCGTCGAA
CAGCAGCACCCTCCCCTGCCTCCGCCATCTGCGGGGGGCGACGACAACGT
GGGCAG back to top
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