mRNA_H-paniculata_contig33886.9051.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33886.9051.1
Unique NamemRNA_H-paniculata_contig33886.9051.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.530e-16
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   13 SSDVHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            S  VH ALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI
Sbjct:   78 SDQVHQALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 120
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.680e-16
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   22 VHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            VH ALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI
Sbjct:  103 VHQALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 142
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 2.170e-13
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   19 DVHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            D+  A+ RTLEGHQRQI+GTLTVEE+YKDRAAFS+RVREH+
Sbjct:  102 DIEDAIKRTLEGHQRQIIGTLTVEEIYKDRAAFSERVREHV 142
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.990e-13
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   19 DVHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            D+  ++L TLEGHQRQILGTLTVEELYKDRAAFS+RVREH+
Sbjct:   73 DIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHV 113
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A6H5K2E5_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.080e-13
Identity = 39/59 (66.10%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   13 SSDVHSALLRTLEGHQRQILGTLTVEELYK----------------DRAAFSQRVREHI 141
            +  VH ALLRTLEGHQRQILGTLTVEELYK                DRAAFSQRVREHI
Sbjct:  102 ADQVHQALLRTLEGHQRQILGTLTVEELYKARWLCFRTWRRLRAVRDRAAFSQRVREHI 160
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A2R5GCP0_9STRA (Flotillin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCP0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.720e-13
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 YLQDSSD-VHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            +L DS D + SAL RTLEGHQRQILGTLTVEELYK+R+AFS++V+EH+
Sbjct:  444 FLGDSEDQIASALQRTLEGHQRQILGTLTVEELYKNRSAFSEKVKEHV 491
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A5B8MGZ2_9CHLO (Flotillin-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGZ2_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   19 DVHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            D+  AL +TLEGHQRQI+GTLTVEELYKDRAAFS+RV EH+
Sbjct:  100 DIEDALQKTLEGHQRQIVGTLTVEELYKDRAAFSERVYEHV 140
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A7S1DX43_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DX43_HEMAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-12
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 YLQDSSD-VHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVRE 135
            +L +S D +  A+LRT+EGHQRQILGTLTVEE+YKDRAAFS+RVRE
Sbjct:  158 FLGESDDRIRQAILRTMEGHQRQILGTLTVEEIYKDRAAFSERVRE 203
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A7S2S6C3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.650e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 YLQDSSD-VHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            +L DS D +  +L RTLEGHQRQILGTLTVEELYK+R+AFS +VREH+
Sbjct:  105 FLGDSEDAIRDSLRRTLEGHQRQILGTLTVEELYKNRSAFSTKVREHV 152
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BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Match: A0A7S0WQ90_9CHLO (Flotillin-like n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQ90_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 5.000e-12
Identity = 29/41 (70.73%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   19 DVHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI 141
            +++ A+  TLEGHQRQI+GTLTVEE+YKDRAAFS+R+REH+
Sbjct:  101 EINDAIRATLEGHQRQIIGTLTVEEIYKDRAAFSERIREHV 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33886.9051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I5_ECTSI1.530e-1693.02PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I4_ECTSI5.680e-1697.50PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9SVU7_9CHLO2.170e-1378.05Flotillin-like n=1 Tax=Polyblepharides amylifera T... [more]
A0A835YT26_9STRA2.990e-1380.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K2E5_9PHAE3.080e-1366.10PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2R5GCP0_9STRA7.720e-1372.92Flotillin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A5B8MGZ2_9CHLO1.910e-1278.05Flotillin-like n=1 Tax=Chloropicon primus TaxID=17... [more]
A0A7S1DX43_HEMAN1.970e-1273.91Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2S6C3_9STRA3.650e-1270.83Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S0WQ90_9CHLO5.000e-1270.73Flotillin-like n=1 Tax=Pyramimonas obovata TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33886contigH-paniculata_contig33886:1201..1988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D7G1I5
Preferred nameFLOT2
KEGG koko:K07192
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Exons2
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.5333295-CDS-H-paniculata_contig33886:1200..13021622930044.5333295-CDS-H-paniculata_contig33886:1200..1302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33886 1201..1302 +
1691481123.8273947-CDS-H-paniculata_contig33886:1200..13021691481123.8273947-CDS-H-paniculata_contig33886:1200..1302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33886 1201..1302 +
1622930044.5499108-CDS-H-paniculata_contig33886:1949..19881622930044.5499108-CDS-H-paniculata_contig33886:1949..1988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33886 1950..1988 +
1691481123.839424-CDS-H-paniculata_contig33886:1949..19881691481123.839424-CDS-H-paniculata_contig33886:1949..1988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33886 1950..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33886.9051.1prot_H-paniculata_contig33886.9051.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33886 1201..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33886.9051.1

>prot_H-paniculata_contig33886.9051.1 ID=prot_H-paniculata_contig33886.9051.1|Name=mRNA_H-paniculata_contig33886.9051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
YLQDSSDVHSALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHI
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mRNA from alignment at H-paniculata_contig33886:1201..1988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33886.9051.1 ID=mRNA_H-paniculata_contig33886.9051.1|Name=mRNA_H-paniculata_contig33886.9051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=788bp|location=Sequence derived from alignment at H-paniculata_contig33886:1201..1988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTTGCAGGACAGCAGCGATGTGCACTCCGCGCTGCTGAGGACGCTTGA
AGGTCACCAGCGACAGATTCTCGGCACCCTAACAGTCGAAGAGCTGTACA
AGGTAAAACACATTCGCCACCAACAACAGTAACAACCACCACAACAACAG
CAACAACAGCAATAACAACATGCCACCATACCATAGCATACTTTTGTTAC
CCTCTCGACAATGCGACTCAGCGAGTTGGAAGTTAGAACCCTCGCTGCGC
CGCACGCCGCGGTTTGTTCTTGTCATTTTCCACAAACGTGTGTCGTGCAA
TCGCGCCCCAGCACTGCCACTGTTTTTTTTTTTTGTCATTTTCCATAGCC
CCCCGCCATCCTCGATAAAATATCCATTTTCCAGCTCACGGCACGGCAGG
AACCCAAAGTCGTTACCATGTTGTATGTTCCCTTCGAAGGTACCTTGGTT
TTAAGGTGCGTCTCTCTCTTCTATGTTACCCTGTTTTAACACGCGAGCTG
TTTTCGTGTCACGCAAAAGGCATACAAATGCGCTCAAGTGTGTACGCATT
CAACTGAGGAGCGTTACTAGGCTTCAAGCTCAAGGTGACCTGAAGGGGCA
CTCCATCCAATCACTCGTTCAAGGCACTAAGAAAAGTTCGGGATAAAGGA
TAGAGCATGTTTTTTTGTTTTTTTAATCTATGAACTATTATTGATTCTTT
TTTGTTTTCATTCTCGATGCGTTGCTGTACGTCGCCGTGTGTATCATAGG
ACCGCGCAGCGTTCTCTCAGCGGGTTCGCGAGCACATC
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Coding sequence (CDS) from alignment at H-paniculata_contig33886:1201..1988+

>mRNA_H-paniculata_contig33886.9051.1 ID=mRNA_H-paniculata_contig33886.9051.1|Name=mRNA_H-paniculata_contig33886.9051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig33886:1201..1988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTTGCAGGACAGCAGCGATGTGCACTCCGCGCTGCTGAGGACGCTTGA
AGGTCACCAGCGACAGATTCTCGGCACCCTAACAGTCGAAGAGCTGTACA
AGTATTTGCAGGACAGCAGCGATGTGCACTCCGCGCTGCTGAGGACGCTT
GAAGGTCACCAGCGACAGATTCTCGGCACCCTAACAGTCGAAGAGCTGTA
CAAGGACCGCGCAGCGTTCTCTCAGCGGGTTCGCGAGCACATCGACCGCG
CAGCGTTCTCTCAGCGGGTTCGCGAGCACATC
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