prot_H-paniculata_contig3388.9050.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3388.9050.1
Unique Nameprot_H-paniculata_contig3388.9050.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length231
Homology
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.350e-13
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 0
Query:  134 GVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMVRRVLPRLDD 212
            G V SD M KT+ V VPY Y V   GKR+ RYSK+MAHDE +S  +GD V +    ++ SKRK H ++ + R LPRLDD
Sbjct:  146 GKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQK-SKRKKHTLLKIVRKLPRLDD 223          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A4V2PDG9_9BACT (30S ribosomal protein S17 n=1 Tax=Phorcysia thermohydrogeniphila TaxID=936138 RepID=A0A4V2PDG9_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 5.280e-11
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  131 IRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMV 203
            +R GVV SD+M KTV+V+V  E+  P+YGKR+ R  K MAHDE +  RIGD V I       SKRK  +VV +
Sbjct:   12 VRIGVVVSDKMDKTVVVRVTREFRHPLYGKRVKRSKKYMAHDENNECRIGDIVKIMETRP-LSKRKRWRVVEI 83          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A7V3T5E3_9BACT (30S ribosomal protein S17 n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V3T5E3_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 6.750e-11
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  111 TEEEAAAAIAGPTPPTR-RPLIRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGI 185
            T     AA AGP P  R +   R GVV S++MHKT++V+V   +  P YGK +T Y K  AHDET+  ++GDRV I
Sbjct:   12 TSPTPTAAAAGPAPVRRGQRKERIGVVVSNKMHKTIVVRVERRFPHPRYGKIITAYKKFYAHDETNQAQVGDRVRI 87          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: F0S1C9_DESTD (30S ribosomal protein S17 n=2 Tax=Desulfurobacterium thermolithotrophum TaxID=64160 RepID=F0S1C9_DESTD)

HSP 1 Score: 65.1 bits (157), Expect = 3.030e-10
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 0
Query:  131 IRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMV 203
            +R GVV SD+M KTV+V+V  E+  PVYGKR+    K MAHDE +  +IGD V I      +SKRK  +VV +
Sbjct:   11 VRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDENNQCQIGDVVKIMETRP-FSKRKRWRVVEI 82          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A3P1Y2J7_9BACT (30S ribosomal protein S17 n=2 Tax=Fretibacterium sp. OH1220_COT-178 TaxID=2491047 RepID=A0A3P1Y2J7_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 3.090e-9
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0
Query:  131 IRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMVRRVLPRLDDE 213
            +R G+V SD+M KTV+VKV      P+YGKR+ R  K +AHDE ++ R+GD+V I       SK K  +++ V R  P  D +
Sbjct:   10 VRVGIVVSDKMDKTVVVKVSRLAEHPLYGKRIERAKKYVAHDEENTCRVGDQVRIRETRP-LSKTKRWELIEVMRRAPVFDSD 91          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A0K1PDI4_9DELT (30S ribosomal protein S17 n=1 Tax=Vulgatibacter incomptus TaxID=1391653 RepID=A0A0K1PDI4_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 3.360e-9
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0
Query:  128 RPLIRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGI 185
            RP  R GVV+S++M KTV+V+V +  + P YGK +TR+ K  AHDE +  +IGDRV I
Sbjct:    5 RPKSRIGVVTSNKMQKTVVVRVDHRVMHPRYGKYVTRHVKYKAHDELNGCQIGDRVRI 62          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A1E4B6C9_9BACT (30S ribosomal protein S17 n=1 Tax=Gemmatimonadetes bacterium SCN 70-22 TaxID=1660163 RepID=A0A1E4B6C9_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 4.100e-9
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0
Query:  131 IRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMV 203
            +R GVV SD+M KTV+VK+      PVYGK +TR +K+ AHDE +S + GD V I       SK K  +VV +
Sbjct:   18 VRVGVVVSDKMQKTVVVKIDRRVPHPVYGKMVTRTTKVKAHDEENSAKTGDTVRIMETRP-LSKDKRWRVVEI 89          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A7C1HEP9_9BACT (30S ribosomal protein S17 n=1 Tax=Synergistetes bacterium TaxID=2268202 RepID=A0A7C1HEP9_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 4.310e-9
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 0
Query:  132 RFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMV 203
            R G+V SDRM KTV++KV      P+YGK + R  K MAHDE +S RIGDR+ I       S+ K  KVV +
Sbjct:   11 RVGIVVSDRMSKTVVIKVDRMAKHPLYGKPVLRSKKFMAHDEEESCRIGDRIRIEETRP-LSRCKRWKVVEI 81          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A2W4J274_9PROT (30S ribosomal protein S17 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4J274_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 4.560e-9
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 0
Query:  128 RPLIRFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVV 201
            RP +R G+V+S++M KTV+V+V      P YGK +TR+ K  AHDE +S +IGD+V I       SK K  +VV
Sbjct:    4 RPKVRIGIVTSNKMDKTVVVRVERRVKHPQYGKYVTRHVKYKAHDEHNSCQIGDKVRIIETRP-LSKDKRWRVV 76          
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Match: A0A7C0VZR0_9BACT (30S ribosomal protein S17 n=3 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A7C0VZR0_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 6.360e-9
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 0
Query:  132 RFGVVSSDRMHKTVMVKVPYEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKVVMV 203
            + G V SD+M K+V+VKV Y    P+YGKR+ + SK +AHDE ++  IGD+V IA      S+RK  +VV +
Sbjct:   10 KVGRVVSDKMEKSVVVKVEYLVAHPLYGKRIKKSSKFIAHDEKNNCDIGDKVKIAETRP-LSRRKRWRVVEI 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3388.9050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ53_ECTSI4.350e-1351.90Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A4V2PDG9_9BACT5.280e-1150.6830S ribosomal protein S17 n=1 Tax=Phorcysia thermo... [more]
A0A7V3T5E3_9BACT6.750e-1147.3730S ribosomal protein S17 n=1 Tax=Verrucomicrobia ... [more]
F0S1C9_DESTD3.030e-1049.3230S ribosomal protein S17 n=2 Tax=Desulfurobacteri... [more]
A0A3P1Y2J7_9BACT3.090e-942.1730S ribosomal protein S17 n=2 Tax=Fretibacterium s... [more]
A0A0K1PDI4_9DELT3.360e-951.7230S ribosomal protein S17 n=1 Tax=Vulgatibacter in... [more]
A0A1E4B6C9_9BACT4.100e-946.5830S ribosomal protein S17 n=1 Tax=Gemmatimonadetes... [more]
A0A7C1HEP9_9BACT4.310e-948.6130S ribosomal protein S17 n=1 Tax=Synergistetes ba... [more]
A0A2W4J274_9PROT4.560e-945.9530S ribosomal protein S17 n=1 Tax=Proteobacteria b... [more]
A0A7C0VZR0_9BACT6.360e-945.8330S ribosomal protein S17 n=3 Tax=Candidatus Atrib... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 134..201
e-value: 2.7E-18
score: 65.8
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 133..204
NoneNo IPR availableGENE3D2.40.50.140coord: 129..215
e-value: 6.8E-19
score: 69.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..230
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePRODOMPD001295coord: 131..183
e-value: 0.005
score: 94.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 131..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3388contigH-paniculata_contig3388:13479..17307 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3388.9050.1mRNA_H-paniculata_contig3388.9050.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3388 13302..18025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3388.9050.1 ID=prot_H-paniculata_contig3388.9050.1|Name=mRNA_H-paniculata_contig3388.9050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
MLRAVALRTAVAPRRAAARALSSSHGAPAAVHPTLCLSQTSAQWLVRASD
APPQRPVDGMGMLARTMRRGLSTSASGDSDGGRAKGADWRTGGDADGTQE
EVPGATWEGLTEEEAAAAIAGPTPPTRRPLIRFGVVSSDRMHKTVMVKVP
YEYVVPVYGKRMTRYSKIMAHDETDSLRIGDRVGIAHVHKRYSKRKAHKV
VMVRRVLPRLDDENALPPLEKLKGMQASAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold