mRNA_H-paniculata_contig33871.9048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33871.9048.1
Unique NamemRNA_H-paniculata_contig33871.9048.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 4.150e-59
Identity = 84/100 (84.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query:    1 RCAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYTIYHNEV 300
            RCA+C+STFG++LKRRHHCRNCGRLVCSACAE FWPR+MLP TYNVDT+EKKVRVCS+C+GAGE FRKA LSG EE AM AFSTGCVNLRVPYTIYHNE+
Sbjct:   57 RCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNEL 156          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 3.670e-54
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query:    1 RCAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYTIYHNEV 300
            RCA+C+STFG++LKRRHHCRNCGRLVCSACAE FWPR+MLP TYNVDT+EKKVRVCSTC+ AGE FRKA LSG EE AM AFSTGCVNLRVPYTIYHNE+
Sbjct:  381 RCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNEL 480          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.220e-33
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    4 CAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYTIYHN 294
            CA+C+S FG L +RRHHCRNCGR VC ACA+  WP +MLP TY+    E+K R+C TC    E FR ALL+G +  A  A+  GCVNLR PY+IY N
Sbjct:   37 CALCKSYFGMLSRRRHHCRNCGRAVCDACAKTSWPSSMLPFTYSAAKQERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLN 133          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.440e-31
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    4 CAICESTFGFLLKRR-HHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYT 282
            CA C+S+F  + +RR HHCRNCGRLVC+ CA  FWP++MLP +Y   +TE++VRVC TC+  G+ FR+ALL G  + AM A+ TGCVNLR P++
Sbjct:  591 CAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS 684          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.150e-30
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1
Query:    4 CAICESTFGFLL-KRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYT 282
            CA C+S F  +L +RRHHCRNCGRLVC+ CA  FWP++MLP +Y   +TE++VRVC TC+  G+ FR+ALL G  + AM A  TGCVNLR P++
Sbjct:  521 CAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS 614          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.640e-22
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 RCAICESTFGFLLK--------------RRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYTIYHNEV 300
            RCA+C ST   ++                  +CRNC R+VC  C   FW RNM+P  Y  +    ++RVC TC+ A E FR ALL G  E+AM A+STGCVNL  PYT++H E+
Sbjct:  494 RCALCMSTNVSVVHPPGGNNRGNRXXXXXNKNCRNCWRVVCDDCVGTFWARNMVPPRYASERDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGEL 607          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.920e-22
Identity = 51/114 (44.74%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 RCAICESTF--------------GFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYTIYHNEV 300
            RCA+C ST               G       +CRNC R+VC  C   FW RNM+P  Y  +    ++RVC TC+ A E FR ALL G  E+AM A+STGCVNL  PYT++H E+
Sbjct:  492 RCALCMSTNVSAVHPPGGNTRRNGNSSSSDKNCRNCWRVVCDDCIGTFWARNMVPPRYASEGDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGEL 605          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A7S1CPH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPH2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.300e-21
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 CAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCV-NLRVPYTIY 288
            C IC+ TFG + + +HHCRNCG LVCS C+ A WP+ ML + +N+   EK +R+CS C  + E FR+AL+ G    A+R F  G + +L  P+ I+
Sbjct:  131 CKICKGTFGLIGRHKHHCRNCGALVCSKCSPARWPKKMLSAGFNLKN-EKMLRICSVCQMSLESFREALMEGNLTAALRVFRRGYIRDLSTPHLIF 225          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A0M0K3E4_9EUKA (Hepatocyte growth factor-regulated tyrosine kinase substrate n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3E4_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-12
Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    4 CAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTT-----EKKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGC-VNLR 270
            C  C   FG L++RRHHCRNCG  +C AC    WP   +P+ + V        EK VRVC +C GA + FR  +L+G    AM   + G  VNLR
Sbjct:  249 CTRCGQGFG-LVRRRHHCRNCGHAMCDACC-LKWPMRSMPALFTVGDGGIAIGEKHVRVCYSCDGAAQAFRIYMLAGDYGGAMNMLNLGANVNLR 341          
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Match: A0A1I8J253_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J253_9PLAT)

HSP 1 Score: 61.2 bits (147), Expect = 8.500e-9
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    4 CAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTEKKVRVCSTCH 180
            C +C +TFG L+ RRHHCRNCG LVCS C++  W   +LP+      +++ +RVC TC+
Sbjct:  467 CMLCSATFG-LISRRHHCRNCGFLVCSPCSQHTW---VLPAQ-----SDQPLRVCDTCY 516          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33871.9048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM9_ECTSI4.150e-5984.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTC5_9PHAE3.670e-5484.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CC14_9STRA1.220e-3356.70FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KUU5_9PHAE8.440e-3156.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI1.150e-3057.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTY3_9PHAE3.640e-2243.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF5_ECTSI4.920e-2244.74FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1CPH2_9STRA9.300e-2144.79Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0M0K3E4_9EUKA1.010e-1243.16Hepatocyte growth factor-regulated tyrosine kinase... [more]
A0A1I8J253_9PLAT8.500e-947.46Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33871contigH-paniculata_contig33871:1223..2166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue5.8e-46
Seed eggNOG ortholog2880.D8LDM9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.1188216-CDS-H-paniculata_contig33871:1222..13651622930044.1188216-CDS-H-paniculata_contig33871:1222..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33871 1223..1365 +
1691481123.6803584-CDS-H-paniculata_contig33871:1222..13651691481123.6803584-CDS-H-paniculata_contig33871:1222..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33871 1223..1365 +
1622930044.1344185-CDS-H-paniculata_contig33871:2009..21661622930044.1344185-CDS-H-paniculata_contig33871:2009..2166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33871 2010..2166 +
1691481123.6892202-CDS-H-paniculata_contig33871:2009..21661691481123.6892202-CDS-H-paniculata_contig33871:2009..2166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33871 2010..2166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33871.9048.1prot_H-paniculata_contig33871.9048.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33871 1223..2166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33871.9048.1

>prot_H-paniculata_contig33871.9048.1 ID=prot_H-paniculata_contig33871.9048.1|Name=mRNA_H-paniculata_contig33871.9048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
RCAICESTFGFLLKRRHHCRNCGRLVCSACAEAFWPRNMLPSTYNVDTTE
KKVRVCSTCHGAGEQFRKALLSGCEEEAMRAFSTGCVNLRVPYTIYHNEV
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mRNA from alignment at H-paniculata_contig33871:1223..2166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33871.9048.1 ID=mRNA_H-paniculata_contig33871.9048.1|Name=mRNA_H-paniculata_contig33871.9048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=944bp|location=Sequence derived from alignment at H-paniculata_contig33871:1223..2166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGCCATATGCGAGTCGACGTTTGGGTTCCTGCTGAAGCGCAGGCA CCACTGCCGGAACTGCGGGCGTCTTGTGTGCAGTGCTTGCGCAGAGGCGT TCTGGCCGAGGAACATGCTTCCGTCTACTTACAACGTAGACACGTGAGCT TTTTTTCTTTTTTTTTCCAATATCCCCAGGGAGAATGTAAGGGTTCAAAA GCTGCCCTACCTCACCCCTCGTGTTTTTGGTTCTTAAAATTTGAAATGCT TTTGTGTTTTTCGTTCCATCTCGTCGTTGGTATGATCCGCTGGTTGCTCG CAGCTTTGATGATTACACGACTGGCAAAATGCTTTTTTTGCATGCATGCG GAGTGTTCCCAGTTGTCGTGCTGACCACTTCTTTGTTTTTCGTCGACTCA TGAATCCTACAGCTCAGACCCGCAGTCACATGACCATCATATAGAACGCG GAAAGGTTGAATGCTCGAAATCACGTGCTCCATTTTTCAACCCACGGACA GTTGATTTGTACGCCGTTGTTGCCAGGAACATCTGAGCATCAAACTTTAA AGGCTGAATCGCGAAACGTTTACACTTGGGGTCGTAATTTGTCGTTTTCC ACTCGAAAAAAATATCAACGGCTACTTTGATTGGTCTAAATCTGCGTGCC CCCATTTGTTAATTCCGTTCTCCATCGATTCCGAGGAGGTCGAGGTTTGG TGTGGCGGACTCGAGTTTTTTTTTTTTTTCTCCCCGTCCATTTTTTTTTT TCTTTGCTCTCATCACCAAAAACGAAATCATACTCAGAACGGAGAAGAAG GTGCGAGTGTGCAGCACGTGCCACGGTGCGGGAGAACAGTTCAGGAAGGC TCTGTTGTCCGGGTGCGAAGAGGAGGCCATGCGTGCTTTCAGCACGGGCT GCGTTAACTTGAGGGTACCCTACACCATCTACCACAATGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig33871:1223..2166+

>mRNA_H-paniculata_contig33871.9048.1 ID=mRNA_H-paniculata_contig33871.9048.1|Name=mRNA_H-paniculata_contig33871.9048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig33871:1223..2166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCGCCATATGCGAGTCGACGTTTGGGTTCCTGCTGAAGCGCAGGCA
CCACTGCCGGAACTGCGGGCGTCTTGTGTGCAGTGCTTGCGCAGAGGCGT
TCTGGCCGAGGAACATGCTTCCGTCTACTTACAACGTAGACACAGGTGCG
CCATATGCGAGTCGACGTTTGGGTTCCTGCTGAAGCGCAGGCACCACTGC
CGGAACTGCGGGCGTCTTGTGTGCAGTGCTTGCGCAGAGGCGTTCTGGCC
GAGGAACATGCTTCCGTCTACTTACAACGTAGACACAACGGAGAAGAAGG
TGCGAGTGTGCAGCACGTGCCACGGTGCGGGAGAACAGTTCAGGAAGGCT
CTGTTGTCCGGGTGCGAAGAGGAGGCCATGCGTGCTTTCAGCACGGGCTG
CGTTAACTTGAGGGTACCCTACACCATCTACCACAATGAGGTGAACGGAG
AAGAAGGTGCGAGTGTGCAGCACGTGCCACGGTGCGGGAGAACAGTTCAG
GAAGGCTCTGTTGTCCGGGTGCGAAGAGGAGGCCATGCGTGCTTTCAGCA
CGGGCTGCGTTAACTTGAGGGTACCCTACACCATCTACCACAATGAGGTG
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