mRNA_H-paniculata_contig33851.9045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33851.9045.1
Unique NamemRNA_H-paniculata_contig33851.9045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: D7FK55_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK55_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.000e-44
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAY--GSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            +FSA+VNAFMCPPLF WLVGKSELT+GVVDVKA   G  P RQEVWR+TVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG
Sbjct:   53 KFSAEVNAFMCPPLFGWLVGKSELTEGVVDVKAAKEGEGP-RQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 135
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: A0A6H5L107_9PHAE (D27-like_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L107_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.020e-40
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAY--GSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            +FSA+VNAFMCPPLF WLVGKSELT+GVVD+KA   G  P RQEVWR+TVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG
Sbjct:  405 KFSAEVNAFMCPPLFGWLVGKSELTEGVVDIKAAKEGEGP-RQEVWRNTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 487
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: A0A835ZB75_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB75_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.740e-27
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            +FSA++NA MC  L  WLVG S +T   V V   G+     EVWR+ VKVERCRYLEAS+CKG CMNLCK+PTE FFRE+LG
Sbjct:   72 KFSAELNAVMCAILSDWLVGPSTVTTAEVPVAGGGT-----EVWRAAVKVERCRYLEASRCKGACMNLCKVPTETFFREELG 148
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: UPI001A0411DB (DUF4033 domain-containing protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI001A0411DB)

HSP 1 Score: 78.2 bits (191), Expect = 1.290e-15
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   13 QVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            ++NA+    LF WLVG  E+ +  V+V      P RQ   RS V +++CRYLE S+C G C+N+CKLPT+AFF ED G
Sbjct:  101 ELNAWFATVLFEWLVGPCEVRE--VEVPDRDGNPRRQ---RSGVHIQKCRYLEQSRCVGMCVNMCKLPTQAFFSEDFG 173
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: I6PI00_CHLAT (Putative D27 protein n=1 Tax=Chlorokybus atmophyticus TaxID=3144 RepID=I6PI00_CHLAT)

HSP 1 Score: 74.7 bits (182), Expect = 8.950e-15
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            ++ A++NA++ P  F WLVG  E+ D  VD+             RS V +++CRYLE S C G C+NLCK PT+ FF E++G
Sbjct:   63 KWGAELNAWVTPTFFKWLVGPMEVRD--VDINGVTQ--------RSQVHIKKCRYLETSGCVGMCVNLCKFPTQKFFTEEMG 134
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: A0A6I5NXU5_9CYAN (DUF4033 domain-containing protein n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NXU5_9CYAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-14
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            Q   ++NA+    LF WLVG  E+T+  V V      P +Q   +S V ++RCRYLE S+C G C+N+CKLPT+ FF +D G
Sbjct:   87 QLVCELNAWFATILFEWLVGPCEVTE--VTVMGDDGQPRQQ---KSGVHMQRCRYLEQSRCVGMCVNMCKLPTQQFFTQDFG 163
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: UPI0002AC9319 (DUF4033 domain-containing protein n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0002AC9319)

HSP 1 Score: 75.1 bits (183), Expect = 1.330e-14
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   13 QVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            ++NA+    LF WLVG  E+T   V+V    S    Q   RS V +ERCRYLE S+C G C+N+CKLPT+ FF ++ G
Sbjct:  104 ELNAWFAARLFEWLVGPCEVT--AVEVPGQTS----QRTQRSGVHIERCRYLEQSRCVGMCINMCKLPTQDFFTQEFG 175
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: I6PGT8_CHAGL (Putative D27 family protein (Fragment) n=1 Tax=Chaetosphaeridium globosum TaxID=96477 RepID=I6PGT8_CHAGL)

HSP 1 Score: 72.8 bits (177), Expect = 1.550e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            ++ A+VNA + P  F WLVG +++    V+++     P ++   RS V++ERCRYL  S C G C+NLCKLP + FF E+LG
Sbjct:    7 EWGAEVNATITPAFFKWLVGPAKVV--AVELE-----PGKE--LRSGVQIERCRYLATSGCAGMCVNLCKLPCQTFFTEELG 79
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: A0A2P8WI09_9CYAN (DUF4033 domain-containing protein n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WI09_9CYAN)

HSP 1 Score: 73.6 bits (179), Expect = 2.750e-14
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 QFSAQVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            Q   ++NA+    LF WLVG   +T+  V+V    S   RQ   RS V +E+CRYLE S+C G C+NLCK+PT+ FF E  G
Sbjct:   61 QLVCELNAWFATVLFEWLVGPCHVTE--VEVPNQDSEIKRQ---RSGVHIEKCRYLEHSRCVGLCVNLCKVPTQQFFTEKFG 137
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BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Match: A0A0C1Y5F4_9CYAN (D27-like_C domain-containing protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1Y5F4_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.080e-14
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   13 QVNAFMCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEASKCKGTCMNLCKLPTEAFFREDLG 246
            ++NA+    LF WLVG  E+T+  V V      P +Q    S V +++CRYLE S+C G C+N+CKLPT+ FF ED G
Sbjct:   91 ELNAWFATVLFEWLVGPCEVTE--VTVTDANGEPRQQT---SGVHIQKCRYLEQSRCVGMCVNMCKLPTQRFFTEDFG 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33851.9045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK55_ECTSI5.000e-4486.90D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5L107_9PHAE1.020e-4085.71D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A835ZB75_9STRA4.740e-2762.20D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
UPI001A0411DB1.290e-1548.72DUF4033 domain-containing protein n=1 Tax=Leptolyn... [more]
I6PI00_CHLAT8.950e-1542.68Putative D27 protein n=1 Tax=Chlorokybus atmophyti... [more]
A0A6I5NXU5_9CYAN1.120e-1445.12DUF4033 domain-containing protein n=1 Tax=Leptolyn... [more]
UPI0002AC93191.330e-1447.44DUF4033 domain-containing protein n=1 Tax=Leptolyn... [more]
I6PGT8_CHAGL1.550e-1443.90Putative D27 family protein (Fragment) n=1 Tax=Cha... [more]
A0A2P8WI09_9CYAN2.750e-1446.34DUF4033 domain-containing protein n=1 Tax=filament... [more]
A0A0C1Y5F4_9CYAN3.080e-1446.15D27-like_C domain-containing protein n=3 Tax=Cyano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33851contigH-paniculata_contig33851:417..2296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.2e-29
Seed eggNOG ortholog2880.D7FK55
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4033)
EggNOG OGs2CN5C@1,2QTYT@2759
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-04_005770.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size255
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33851.9045.1prot_H-paniculata_contig33851.9045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33851 444..2296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.5618694-UTR-H-paniculata_contig33851:416..4431622930043.5618694-UTR-H-paniculata_contig33851:416..443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33851 417..443 +
1691481123.4935596-UTR-H-paniculata_contig33851:416..4431691481123.4935596-UTR-H-paniculata_contig33851:416..443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33851 417..443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.5776267-CDS-H-paniculata_contig33851:443..5121622930043.5776267-CDS-H-paniculata_contig33851:443..512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33851 444..512 +
1691481123.5029182-CDS-H-paniculata_contig33851:443..5121691481123.5029182-CDS-H-paniculata_contig33851:443..512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33851 444..512 +
1622930043.5911708-CDS-H-paniculata_contig33851:2137..22961622930043.5911708-CDS-H-paniculata_contig33851:2137..2296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33851 2138..2296 +
1691481123.5110629-CDS-H-paniculata_contig33851:2137..22961691481123.5110629-CDS-H-paniculata_contig33851:2137..2296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33851 2138..2296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33851.9045.1

>prot_H-paniculata_contig33851.9045.1 ID=prot_H-paniculata_contig33851.9045.1|Name=mRNA_H-paniculata_contig33851.9045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MCPPLFTWLVGKSELTDGVVDVKAYGSFPARQEVWRSTVKVERCRYLEAS
KCKGTCMNLCKLPTEAFFREDLGEG*
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mRNA from alignment at H-paniculata_contig33851:417..2296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33851.9045.1 ID=mRNA_H-paniculata_contig33851.9045.1|Name=mRNA_H-paniculata_contig33851.9045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1880bp|location=Sequence derived from alignment at H-paniculata_contig33851:417..2296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTTTCTGCTCAGGTTAACGCTTTCATGTGTCCCCCCCTCTTTACCTG
GCTAGTGGGCAAATCGGAGCTGACAGACGGGGTGGTAGACGTGAAGGTGA
GATGACAACAGCCATGGCCGTCTAAAATCCCTGGTGTAAAAACGCTTCTA
GGTCATACTTAATGCTGTCTGTATTGGAACATTTTTTCACATGTATTGAA
CAAAATTGTAAGCAACGATTTTTTCATTGAAATGCGTCTTCCTGCGGGTA
CAGCGAGCGATTGTGCATAGGTTGAGACCGGAACGGGGACTTCGTAACCC
TAGCCGCTGTCGCTCTTTCCATTACTGATGTTACGTGATGGAGCTTGATG
ATTAATTTCCCGAAAATCGGACGCGTGAGGGTCGGGCTTTTTGATCCACT
TCTTCAAAAAATCCGACGAGAAGAAGTCAAGCTGATCGATTCATTACCGA
TCGGACGATTAAAGGGTCAGGCTTTTTTATTAAACTTGCCAAAATCTGAC
GAATGGAGATCAAGACTTTGGATTGATTTCCTGGAAATCCGACGAGAAAA
CACTTAATCTTTCAATTTCACCTCCCAAAACACCGAGGAGCACGAATCAA
GATTGATGATTCATTTCCTGAAGGTTCAACGACTGATCGTGAAACGTCTC
GGTTCGACCCCCTCAAGCTCCGATGGTTAGGTGTCAGGCTCCACGATTAA
TTTACAAACAGTCCGACGAGTAGAAATCCAGTTTTTCAATTAATTCTCCG
ATAATCGCCGAAAATCGGACACGAGTATCCCGTGTGCAAGGGTTGTGTCT
CACATTGCTTGTATACGAACCTCGATGGAGACAGAGAGACAAGAGAGATC
GTTTTGCTTGGCGTCTATTGCACTCAACTCGGTTGCCACGACCGGTTGTC
TGGTTTCTGTTTTGCGGTAAAATCGAGGCTTAAATGCCACACGATAGCAA
TCAGGCAGTTCGTAACATGGTGTGATTCACGAGGCGCGAAACAGACCTCA
CAGCTTTTTGCAAAAACATATGTTTTCCTGAATATGGTGTTCAGTTATGC
TGCTTTCAGGCTCAGGTGACGCTTTTTGTTTCTCTGTTTTCTAGATTCTC
GTGCTGACTTCATGTGCAACTTGGGCTTTATTGTCAGCAATAGCGAAAAA
CAGTCGGTACGTCGGTATGGGATCGATCGATCTCACGGACTCGCTTCTTA
CACAGAAATGCCGTGAAATATAGACTGTTACACTGGTACGTTCCTTCTAA
ACTGGCGTGTTGTCCGTGTCATCACCGTTATGGTCTGCTGCTTTGCATTT
GTGAACACATACAAGGCAACTCAATTACGTTGCATAACAGTCAAGATAGA
GAAGACGGTAAAGGGGTGGGGGGGTGGGGGGAAGACGTCGCTCGCTTTCT
TGCGACGAAGCATGCCGAAGGACCATTTTTTTTCGCAGCAGCCCTCACAT
TTTTTAAAAGACTCAACACGATTGCCTCATGTGTTGAGACGAAATACGAA
GACCTCGAAGCCGGAAGAACCATTTCACGCTAGTAACGAATGTGTCCACT
CCAGTAGAGGTGCTTTTGTGGATAGCCAGCCCTACCGCTTCGAAAGAAGA
CAGTAACCACTACTACTGCTGCTGGTGTTGCATGCTCCGAGTATGCACCG
GGATTGCCCGAAATTTCGCCTTCAAAACACGGGAATAATTTTTGTTCCTG
CCCCTGCGTCGCCACCGCCAGGCGTATGGATCGTTTCCTGCCAGGCAAGA
GGTGTGGCGGAGCACAGTAAAGGTAGAGCGCTGCCGATACCTGGAGGCCA
GCAAGTGTAAAGGCACCTGCATGAACCTCTGCAAGCTTCCCACTGAGGCG
TTTTTCCGGGAAGATTTAGGTGAGGGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig33851:417..2296+

>mRNA_H-paniculata_contig33851.9045.1 ID=mRNA_H-paniculata_contig33851.9045.1|Name=mRNA_H-paniculata_contig33851.9045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig33851:417..2296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTCCCCCCCTCTTTACCTGGCTAGTGGGCAAATCGGAGCTGACAGA
CGGGGTGGTAGACGTGAAGATGTGTCCCCCCCTCTTTACCTGGCTAGTGG
GCAAATCGGAGCTGACAGACGGGGTGGTAGACGTGAAGGCGTATGGATCG
TTTCCTGCCAGGCAAGAGGTGTGGCGGAGCACAGTAAAGGTAGAGCGCTG
CCGATACCTGGAGGCCAGCAAGTGTAAAGGCACCTGCATGAACCTCTGCA
AGCTTCCCACTGAGGCGTTTTTCCGGGAAGATTTAGGTGAGGGATGAGCG
TATGGATCGTTTCCTGCCAGGCAAGAGGTGTGGCGGAGCACAGTAAAGGT
AGAGCGCTGCCGATACCTGGAGGCCAGCAAGTGTAAAGGCACCTGCATGA
ACCTCTGCAAGCTTCCCACTGAGGCGTTTTTCCGGGAAGATTTAGGTGAG
GGATGA
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