prot_H-paniculata_contig33841.9043.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig33841.9043.1
Unique Nameprot_H-paniculata_contig33841.9043.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length139
Homology
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 3.190e-76
Identity = 130/139 (93.53%), Postives = 135/139 (97.12%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            ATFVKELIYRSLER NLDKVYRQIQELRKRLRTREQKAVEEADLV QAKL+RSKDQRVPRLQDLTMRPTLAGKTVG+LEAHSNGLRF+SQKH+ LD LYANIKHAFYQPCNGVIDTKV+LHFSLKHPIMVGKKAHKEIQ
Sbjct:  597 ATFVKELIYRSLERQNLDKVYRQIQELRKRLRTREQKAVEEADLVTQAKLIRSKDQRVPRLQDLTMRPTLAGKTVGSLEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGVIDTKVILHFSLKHPIMVGKKAHKEIQ 735          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 182 bits (463), Expect = 5.310e-51
Identity = 96/137 (70.07%), Postives = 113/137 (82.48%), Query Frame = 0
Query:    3 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            FVKEL +RSL++ NL   +RQ+QELRKRLR REQKAVEEADLV+QAKL+R  D +VPRL DLT+RP L GKT GALEAH+NGLRF S K  +++ILYANI+ A +QPC G  DTKVVLHF L+HPIMVGKKAHK +Q
Sbjct:  412 FVKELTFRSLDQQNLGMAFRQVQELRKRLRLREQKAVEEADLVVQAKLIRMTDMKVPRLADLTLRPNLTGKTTGALEAHTNGLRFISIKGESVEILYANIRLAVFQPCEGN-DTKVVLHFYLRHPIMVGKKAHKNVQ 547          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7R9W7Y6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7Y6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.370e-44
Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            A+F++E+ +RSLE HNL + YRQIQELRKR R +E + +EEA+LV Q KLVR+K++RVPRL DLTMRP  AG KT G LEAHSNG+RF S +   +DI+YANIKHA +QPC   I   V++HF LK+PIM+GKK  K+IQ
Sbjct:  127 ASFIREMTFRSLESHNLTQAYRQIQELRKRERQKEIRELEEANLVKQEKLVRTKNERVPRLSDLTMRPVFAGRKTQGNLEAHSNGMRFISTRGEVVDIMYANIKHAIFQPCEQEI--MVLVHFHLKNPIMLGKKKQKDIQ 264          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A1Z5K1K7_FISSO (FACT complex subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1K7_FISSO)

HSP 1 Score: 159 bits (401), Expect = 2.150e-42
Identity = 82/140 (58.57%), Postives = 109/140 (77.86%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            A+F++EL +RSL+ HNL + +RQI ELRKR+RT+E +  EEADLV Q KLVR+K++RVPRL D+TMRP  AG KT G LEAHSNG+RF S +   +D++Y+NIK+A YQPC   I   V++HF LK+PIM+GKK H ++Q
Sbjct:  645 ASFIRELTFRSLDGHNLTQAFRQISELRKRVRTKELQQQEEADLVEQEKLVRTKNERVPRLADVTMRPVFAGRKTQGNLEAHSNGMRFISTRQEIVDVMYSNIKYAIYQPCENEI--MVLIHFHLKNPIMIGKKKHNDVQ 782          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: F0YK20_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK20_AURAN)

HSP 1 Score: 154 bits (388), Expect = 3.720e-42
Identity = 76/140 (54.29%), Postives = 106/140 (75.71%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAGK-TVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            +TF+KE++YRS E   L   YR IQELRKR R    +  EEADL++Q KLV+ +DQR+PR+ DLTMRP L+GK T G+LEAH+NGLRFSS+KH  +DI+Y NI+H+ +QPC    +  V++HF L++PI++GKK  +++Q
Sbjct:   47 STFIKEMLYRSREPRRLTAAYRMIQELRKRFRQHAARVAEEADLIIQEKLVKMRDQRIPRMTDLTMRPFLSGKKTTGSLEAHTNGLRFSSKKHEMVDIMYTNIQHSLFQPCE--CEVMVLIHFHLQNPILIGKKKTQDVQ 184          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.020e-41
Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            A+F++E+ +RSL+ HNL + +RQI ELRKR R +E + +EEA+LV QAKLVR+K +RVPRL DLTMRP  AG KT G LEAHSNGLRF S +   +DI+Y NIKHA +QPC   I   V++HF L+HPIM+GKK  ++IQ
Sbjct:  645 ASFIREMTFRSLDSHNLTQAFRQISELRKRARQKELRELEEANLVKQAKLVRTKTERVPRLSDLTMRPVFAGRKTQGNLEAHSNGLRFISMRGEIVDIMYPNIKHAIFQPCENEI--MVLVHFHLRHPIMLGKKKQQDIQ 782          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7S1ULG9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULG9_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.480e-41
Identity = 80/138 (57.97%), Postives = 108/138 (78.26%), Query Frame = 0
Query:    3 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            F+KE+++RSL+  NL + +RQI ELRKR+R+RE K  EEADLV QA+L R KDQR PRL D+T+RP L+G K++G LEAH+NG+RF+S +   LDI+Y+N++HA  QPC    +T V LHF+LK+PIMVGKK H ++Q
Sbjct:  586 FIKEMLFRSLQNENLRRAFRQINELRKRVRSREAKEAEEADLVEQARLERLKDQRAPRLADVTLRPQLSGRKSMGHLEAHANGMRFTSTRGEYLDIMYSNVRHAIMQPCKE--ETMVALHFNLKNPIMVGKKKHHDVQ 721          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7S2A8Z5_TRICV (FACT complex subunit n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z5_TRICV)

HSP 1 Score: 154 bits (389), Expect = 3.600e-41
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            A+F++E+ +RSLE HNL + YRQIQELRKR R +E +  EEA+LV Q KL+R+K++RVPRL DLTMRP  A  KT G LEAH+NG+RF S +   +D++Y NIKHA YQPC   I   V++HF L++PIM+GKK  K+IQ
Sbjct:  199 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEANLVKQEKLIRTKNERVPRLSDLTMRPVFASRKTQGNLEAHTNGMRFISTRGEVVDVMYGNIKHAIYQPCENEI--MVLIHFHLRNPIMLGKKKQKDIQ 336          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7S4JB19_9STRA (FACT complex subunit (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JB19_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.510e-41
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            A+F++E+ +RSLE HNL + YRQIQELRKR R +E +  EEADLV Q KLVR+K +RVPRL DLTMRP  AG KT G LE+H+NG+RF S +   +DI+YANIKHA +QPC   I   V++HF LK+PIM+GKK   +IQ
Sbjct:  638 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEADLVKQEKLVRTKTERVPRLADLTMRPVFAGRKTQGNLESHTNGMRFISTRGEVVDIMYANIKHAIFQPCEQEI--MVLVHFHLKNPIMLGKKKQADIQ 775          
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: B7FSR1_PHATC (FACT complex subunit n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR1_PHATC)

HSP 1 Score: 154 bits (388), Expect = 1.210e-40
Identity = 85/140 (60.71%), Postives = 104/140 (74.29%), Query Frame = 0
Query:    1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 139
            A+FV+E+ +RSL+ HNL   +RQI ELRKR R +E    EEA LV Q KL+R+K++RVPRL DLTMRP  AG KT G LEAHSNGLRF S +   +DI+Y NIK+A YQPC G  D  V++HF LK+PIMVGKK H +IQ
Sbjct:  622 ASFVREMTFRSLDGHNLTLAFRQISELRKRERQKELLQQEEATLVKQEKLIRTKNERVPRLADLTMRPVFAGRKTQGNLEAHSNGLRFISTRSEIVDIMYNNIKYAIYQPCEG--DIMVLIHFHLKNPIMVGKKKHLDIQ 759          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI3.190e-7693.53FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA5.310e-5170.07FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7R9W7Y6_9STRA1.370e-4461.43FACT complex subunit (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1Z5K1K7_FISSO2.150e-4258.57FACT complex subunit n=2 Tax=Fistulifera solaris T... [more]
F0YK20_AURAN3.720e-4254.29FACT complex subunit n=1 Tax=Aureococcus anophagef... [more]
A0A6S9A9U8_9STRA1.020e-4159.29FACT complex subunit n=3 Tax=Ditylum brightwellii ... [more]
A0A7S1ULG9_9STRA2.480e-4157.97FACT complex subunit (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2A8Z5_TRICV3.600e-4157.86FACT complex subunit n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4JB19_9STRA6.510e-4160.00FACT complex subunit (Fragment) n=1 Tax=Odontella ... [more]
B7FSR1_PHATC1.210e-4060.71FACT complex subunit n=5 Tax=Phaeodactylum tricorn... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 17..41
NoneNo IPR availableGENE3D2.30.29.150coord: 39..139
e-value: 8.6E-36
score: 125.0
NoneNo IPR availableGENE3D2.30.29.210coord: 1..38
e-value: 1.5E-7
score: 33.1
NoneNo IPR availablePANTHERPTHR13980:SF15FACT COMPLEX SUBUNIT SPT16coord: 1..139
IPR013953FACT complex subunit Spt16 domainSMARTSM01286SPT16_2coord: 1..87
e-value: 1.0E-12
score: 58.2
IPR013953FACT complex subunit Spt16 domainPFAMPF08644SPT16coord: 1..87
e-value: 2.3E-26
score: 92.8
IPR040258FACT complex subunit Spt16PANTHERPTHR13980CDC68 RELATEDcoord: 1..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33841contigH-paniculata_contig33841:304..1677 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33841.9043.1mRNA_H-paniculata_contig33841.9043.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig33841 304..1677 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig33841.9043.1 ID=prot_H-paniculata_contig33841.9043.1|Name=mRNA_H-paniculata_contig33841.9043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKL
VRSKDQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFSSQKHSALDILYA
NIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013953FACT_Spt16
IPR040258Spt16