mRNA_H-paniculata_contig33841.9043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI) HSP 1 Score: 253 bits (647), Expect = 3.190e-76 Identity = 130/139 (93.53%), Postives = 135/139 (97.12%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
ATFVKELIYRSLER NLDKVYRQIQELRKRLRTREQKAVEEADLV QAKL+RSKDQRVPRLQDLTMRPTLAGKTVG+LEAHSNGLRF+SQKH+ LD LYANIKHAFYQPCNGVIDTKV+LHFSLKHPIMVGKKAHKEIQ
Sbjct: 597 ATFVKELIYRSLERQNLDKVYRQIQELRKRLRTREQKAVEEADLVTQAKLIRSKDQRVPRLQDLTMRPTLAGKTVGSLEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGVIDTKVILHFSLKHPIMVGKKAHKEIQ 735
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA) HSP 1 Score: 182 bits (463), Expect = 5.310e-51 Identity = 96/137 (70.07%), Postives = 113/137 (82.48%), Query Frame = 1
Query: 7 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAGKTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
FVKEL +RSL++ NL +RQ+QELRKRLR REQKAVEEADLV+QAKL+R D +VPRL DLT+RP L GKT GALEAH+NGLRF S K +++ILYANI+ A +QPC G DTKVVLHF L+HPIMVGKKAHK +Q
Sbjct: 412 FVKELTFRSLDQQNLGMAFRQVQELRKRLRLREQKAVEEADLVVQAKLIRMTDMKVPRLADLTLRPNLTGKTTGALEAHTNGLRFISIKGESVEILYANIRLAVFQPCEGN-DTKVVLHFYLRHPIMVGKKAHKNVQ 547
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7R9W7Y6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7Y6_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.370e-44 Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
A+F++E+ +RSLE HNL + YRQIQELRKR R +E + +EEA+LV Q KLVR+K++RVPRL DLTMRP AG KT G LEAHSNG+RF S + +DI+YANIKHA +QPC I V++HF LK+PIM+GKK K+IQ
Sbjct: 127 ASFIREMTFRSLESHNLTQAYRQIQELRKRERQKEIRELEEANLVKQEKLVRTKNERVPRLSDLTMRPVFAGRKTQGNLEAHSNGMRFISTRGEVVDIMYANIKHAIFQPCEQEI--MVLVHFHLKNPIMLGKKKQKDIQ 264
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A1Z5K1K7_FISSO (FACT complex subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1K7_FISSO) HSP 1 Score: 159 bits (401), Expect = 2.150e-42 Identity = 82/140 (58.57%), Postives = 109/140 (77.86%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
A+F++EL +RSL+ HNL + +RQI ELRKR+RT+E + EEADLV Q KLVR+K++RVPRL D+TMRP AG KT G LEAHSNG+RF S + +D++Y+NIK+A YQPC I V++HF LK+PIM+GKK H ++Q
Sbjct: 645 ASFIRELTFRSLDGHNLTQAFRQISELRKRVRTKELQQQEEADLVEQEKLVRTKNERVPRLADVTMRPVFAGRKTQGNLEAHSNGMRFISTRQEIVDVMYSNIKYAIYQPCENEI--MVLIHFHLKNPIMIGKKKHNDVQ 782
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: F0YK20_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK20_AURAN) HSP 1 Score: 154 bits (388), Expect = 3.720e-42 Identity = 76/140 (54.29%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAGK-TVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
+TF+KE++YRS E L YR IQELRKR R + EEADL++Q KLV+ +DQR+PR+ DLTMRP L+GK T G+LEAH+NGLRFSS+KH +DI+Y NI+H+ +QPC + V++HF L++PI++GKK +++Q
Sbjct: 47 STFIKEMLYRSREPRRLTAAYRMIQELRKRFRQHAARVAEEADLIIQEKLVKMRDQRIPRMTDLTMRPFLSGKKTTGSLEAHTNGLRFSSKKHEMVDIMYTNIQHSLFQPCE--CEVMVLIHFHLQNPILIGKKKTQDVQ 184
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.020e-41 Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
A+F++E+ +RSL+ HNL + +RQI ELRKR R +E + +EEA+LV QAKLVR+K +RVPRL DLTMRP AG KT G LEAHSNGLRF S + +DI+Y NIKHA +QPC I V++HF L+HPIM+GKK ++IQ
Sbjct: 645 ASFIREMTFRSLDSHNLTQAFRQISELRKRARQKELRELEEANLVKQAKLVRTKTERVPRLSDLTMRPVFAGRKTQGNLEAHSNGLRFISMRGEIVDIMYPNIKHAIFQPCENEI--MVLVHFHLRHPIMLGKKKQQDIQ 782
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7S1ULG9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULG9_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.480e-41 Identity = 80/138 (57.97%), Postives = 108/138 (78.26%), Query Frame = 1
Query: 7 FVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
F+KE+++RSL+ NL + +RQI ELRKR+R+RE K EEADLV QA+L R KDQR PRL D+T+RP L+G K++G LEAH+NG+RF+S + LDI+Y+N++HA QPC +T V LHF+LK+PIMVGKK H ++Q
Sbjct: 586 FIKEMLFRSLQNENLRRAFRQINELRKRVRSREAKEAEEADLVEQARLERLKDQRAPRLADVTLRPQLSGRKSMGHLEAHANGMRFTSTRGEYLDIMYSNVRHAIMQPCKE--ETMVALHFNLKNPIMVGKKKHHDVQ 721
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7S2A8Z5_TRICV (FACT complex subunit n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z5_TRICV) HSP 1 Score: 154 bits (389), Expect = 3.600e-41 Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
A+F++E+ +RSLE HNL + YRQIQELRKR R +E + EEA+LV Q KL+R+K++RVPRL DLTMRP A KT G LEAH+NG+RF S + +D++Y NIKHA YQPC I V++HF L++PIM+GKK K+IQ
Sbjct: 199 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEANLVKQEKLIRTKNERVPRLSDLTMRPVFASRKTQGNLEAHTNGMRFISTRGEVVDVMYGNIKHAIYQPCENEI--MVLIHFHLRNPIMLGKKKQKDIQ 336
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: A0A7S4JB19_9STRA (FACT complex subunit (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JB19_9STRA) HSP 1 Score: 154 bits (390), Expect = 6.510e-41 Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
A+F++E+ +RSLE HNL + YRQIQELRKR R +E + EEADLV Q KLVR+K +RVPRL DLTMRP AG KT G LE+H+NG+RF S + +DI+YANIKHA +QPC I V++HF LK+PIM+GKK +IQ
Sbjct: 638 ASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEADLVKQEKLVRTKTERVPRLADLTMRPVFAGRKTQGNLESHTNGMRFISTRGEVVDIMYANIKHAIFQPCEQEI--MVLVHFHLKNPIMLGKKKQADIQ 775
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Match: B7FSR1_PHATC (FACT complex subunit n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR1_PHATC) HSP 1 Score: 154 bits (388), Expect = 1.210e-40 Identity = 85/140 (60.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query: 1 ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLVRSKDQRVPRLQDLTMRPTLAG-KTVGALEAHSNGLRFSSQKHSALDILYANIKHAFYQPCNGVIDTKVVLHFSLKHPIMVGKKAHKEIQ 417
A+FV+E+ +RSL+ HNL +RQI ELRKR R +E EEA LV Q KL+R+K++RVPRL DLTMRP AG KT G LEAHSNGLRF S + +DI+Y NIK+A YQPC G D V++HF LK+PIMVGKK H +IQ
Sbjct: 622 ASFVREMTFRSLDGHNLTLAFRQISELRKRERQKELLQQEEATLVKQEKLIRTKNERVPRLADLTMRPVFAGRKTQGNLEAHSNGLRFISTRSEIVDIMYNNIKYAIYQPCEG--DIMVLIHFHLKNPIMVGKKKHLDIQ 759 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33841.9043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33841.9043.1 >prot_H-paniculata_contig33841.9043.1 ID=prot_H-paniculata_contig33841.9043.1|Name=mRNA_H-paniculata_contig33841.9043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp ATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVLQAKLback to top mRNA from alignment at H-paniculata_contig33841:304..1677+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33841.9043.1 ID=mRNA_H-paniculata_contig33841.9043.1|Name=mRNA_H-paniculata_contig33841.9043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig33841:304..1677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33841:304..1677+ >mRNA_H-paniculata_contig33841.9043.1 ID=mRNA_H-paniculata_contig33841.9043.1|Name=mRNA_H-paniculata_contig33841.9043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig33841:304..1677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |