prot_H-paniculata_contig33798.9035.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig33798.9035.1
Unique Nameprot_H-paniculata_contig33798.9035.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length77
Homology
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH)

HSP 1 Score: 67.4 bits (163), Expect = 2.500e-11
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    2 AGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 77
            AG  ++ +STSG ++ +  G   + SS QKT AQST EAE IA+ + A Q I+L  ++ E+G K  + +RIFCDNK
Sbjct: 1202 AGSVEDKKSTSGYVFTIGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGIRIFCDNK 1277          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: UPI001E1BC9B8 (uncharacterized protein LOC116934501 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC9B8)

HSP 1 Score: 67.0 bits (162), Expect = 3.420e-11
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 0
Query:    2 AGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 77
            AGD  +++STSGS+ FL+DG + ++S  Q TTA STTEAE IA+    K  ++L  +L +L  K+ RNV ++CDN+
Sbjct: 1203 AGDIDDSKSTSGSIMFLNDGPVAWSSKKQPTTALSTTEAEYIAVCQGGKTAVWLGYLLEDLLGKDIRNVPMYCDNE 1278          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A1J3G9F4_NOCCA (Copia protein n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G9F4_NOCCA)

HSP 1 Score: 63.9 bits (154), Expect = 3.560e-10
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    3 GDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 77
            G  ++ +STSG ++ +      + SS QKT AQST EAE IA+ + A Q I+L  ++ E+G K  + VRIFCDNK
Sbjct:  201 GSVEDKKSTSGYVFTIGSSAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLVNEIGFKAEKGVRIFCDNK 275          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.530e-10
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    4 DPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 76
            +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:   39 NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 111          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.030e-9
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    4 DPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 76
            +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  154 NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 226          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.660e-9
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    4 DPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 76
            +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  591 NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 663          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.680e-9
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    4 DPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 76
            +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  750 NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 822          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.710e-9
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    4 DPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 76
            +P N RST+G ++FL  G+I + +  Q   AQ+T EAEL A+S  A++ +Y+S  + E+G K FR+V I  D+
Sbjct: 1370 NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDS 1442          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.600e-9
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    4 DPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDN 76
            +P N RST+G M+FL  G+I + +  Q   AQ+T EAEL A+   A++ +Y+S  + E+G K FR+V I  D+
Sbjct:  451 NPDNGRSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDS 523          
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Match: A0A6D2LD64_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LD64_9BRAS)

HSP 1 Score: 60.8 bits (146), Expect = 4.170e-9
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    3 GDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAKQGIYLSGILGELGSKNFRNVRIFCDNK 77
            G  ++ +STSG ++ L  G+  + S+ Q+T AQST EAE IA+     Q I+L  +L ELG K+   V I+CDNK
Sbjct:  130 GSVEDKKSTSGYVFTLGSGMFSWQSNKQQTVAQSTAEAEYIAVCAATNQAIWLQRLLEELGFKSQHGVPIYCDNK 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33798.9035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9LH44_ARATH2.500e-1146.05Copia-like retrotransposable element n=1 Tax=Arabi... [more]
UPI001E1BC9B83.420e-1147.37uncharacterized protein LOC116934501 n=1 Tax=Daphn... [more]
A0A1J3G9F4_NOCCA3.560e-1045.33Copia protein n=1 Tax=Noccaea caerulescens TaxID=1... [more]
A0A6H5K4K1_9PHAE6.530e-1042.47Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC04_9PHAE2.030e-942.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE2.660e-942.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE2.680e-942.47CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHG5_9PHAE2.710e-942.47Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KY35_9PHAE3.600e-942.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6D2LD64_9BRAS4.170e-944.00Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..77
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 2..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33798contigH-paniculata_contig33798:282..512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33798.9035.1mRNA_H-paniculata_contig33798.9035.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig33798 228..512 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig33798.9035.1 ID=prot_H-paniculata_contig33798.9035.1|Name=mRNA_H-paniculata_contig33798.9035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MAGDPQNARSTSGSMYFLSDGVIHFTSSLQKTTAQSTTEAELIAMSTCAK
QGIYLSGILGELGSKNFRNVRIFCDNK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like