mRNA_H-paniculata_contig33787.9032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33787.9032.1
Unique NamemRNA_H-paniculata_contig33787.9032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A6H5LMM4_9PHAE (Peptidase_M3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMM4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.480e-21
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 SAGLWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALL-DDAGGGGEEGVRAGIESMLKDMDISST 210
            ++ +W RHFA DPLN  +GELLWKEL++HGGA+DPH MLR LL ++ G GG+ G+RAG+ S+LKD    +T
Sbjct:  171 TSAIWERHFARDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVASLLKDTGAVAT 241          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: D7FXL4_ECTSI (Mitochondrial intermediate peptidase (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-19
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 SAGLWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALL-DDAGGGGEEGVRAGIESMLKDMDISST 210
            ++ +W RHFA DPLN  +GELLWKEL++HGGA+DPH MLR LL ++ G GG+ G+RAG+ S+LKD    +T
Sbjct:  745 TSAIWERHFAKDPLNSDAGELLWKELLIHGGAKDPHEMLRVLLGEEQGSGGDAGLRAGVTSLLKDTGAVAT 815          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A1Y1HTE0_KLENI (Zincin-like metalloproteases family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTE0_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 4.810e-7
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 SAGLWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDDAG--GGGEEGVRAGIESML 186
            S+ LW ++FA DPLNR++GE+L ++++ +GG+RDP R+L+ +L +      G  G+    ESM+
Sbjct:  758 SSELWAQYFAADPLNREAGEMLRRDVLQYGGSRDPLRILKHVLGEHSMKETGSGGIVPNTESMM 821          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A2K1J7Y6_PHYPA (Peptidase_M3 domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1J7Y6_PHYPA)

HSP 1 Score: 53.1 bits (126), Expect = 2.300e-6
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 SAGLWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALL-DDAGGGGEEGVRAGIESMLKDMDI 201
            +A +W +H   DPLN  +G+ L +  +MHGGARDP +M+R LL +D+      GVR   E +L D+ +
Sbjct:  718 AASIWQKHCIEDPLNLATGDSLRRGFLMHGGARDPSKMMRKLLGEDSLICTAAGVRPCTEQLLADIGL 785          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A8H3C5Z4_9AGAM (Mitochondrial intermediate peptidase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3C5Z4_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 7.950e-6
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   10 LWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDD---AGGGGEEGVRAG 171
            +W + FA DPLNR+ GE   +E++ HGG++DP  ML AL D+   A GG +   R G
Sbjct:  540 VWKKMFARDPLNREMGERYKREILRHGGSKDPWHMLAALFDEPELADGGAKATKRVG 596          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A2R5H0D8_9STRA (Mitochondrial intermediate peptidase, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0D8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.100e-5
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 SAGLWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALL 129
            +A LW   FA DPLNR+ G+ L   ++ HGGARDPH ML+ LL
Sbjct:  773 AADLWHTRFAADPLNREVGDDLRNLMLSHGGARDPHVMLKDLL 815          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A074SBZ0_9AGAM (Mitochondrial intermediate peptidase n=5 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074SBZ0_9AGAM)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   10 LWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDD---AGGGGEEGVRAG 171
            +W + FA DPLNR+ GE   +E++ HGG++DP  ML AL D+   A GG +   R G
Sbjct:  967 VWTKVFARDPLNREMGERYKREVLRHGGSKDPWHMLAALFDEPDLADGGAKAMKRVG 1023          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A8H3BQ77_9AGAM (Mitochondrial intermediate peptidase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3BQ77_9AGAM)

HSP 1 Score: 51.2 bits (121), Expect = 1.110e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   10 LWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDD---AGGGGEEGVRAG 171
            +W + FA DPLNR+ GE   +E++ HGG++DP  ML AL D+   A GG +   R G
Sbjct:  967 VWKKVFARDPLNREMGERYKREILRHGGSKDPWHMLAALFDEPELADGGAKATKRVG 1023          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A8H3AJ32_9AGAM (Mitochondrial intermediate peptidase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AJ32_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 1.490e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   10 LWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDDA--GGGGEEGVR 165
            +W + FA DPLNR+ GE   +E++ HGG++DP  ML AL D+     GGE+ ++
Sbjct:  536 VWKKMFARDPLNREMGERYKREVLRHGGSKDPWHMLAALFDEPELADGGEKAMK 589          
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Match: A0A5N5QS07_9AGAM (Mitochondrial intermediate peptidase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QS07_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 1.520e-5
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   10 LWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDD---AGGGGEEGVRAG 171
            +W + FA DPLNR+ GE   +E++ HGG +DP  ML AL DD   A GG     R G
Sbjct:  981 VWKKLFARDPLNREMGERYKREVLRHGGRKDPWHMLAALFDDPDLADGGARAMKRVG 1037          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33787.9032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5LMM4_9PHAE9.480e-2157.75Peptidase_M3 domain-containing protein n=1 Tax=Ect... [more]
D7FXL4_ECTSI1.200e-1957.75Mitochondrial intermediate peptidase (N-terminal) ... [more]
A0A1Y1HTE0_KLENI4.810e-740.63Zincin-like metalloproteases family protein n=1 Ta... [more]
A0A2K1J7Y6_PHYPA2.300e-641.18Peptidase_M3 domain-containing protein n=3 Tax=Phy... [more]
A0A8H3C5Z4_9AGAM7.950e-645.61Mitochondrial intermediate peptidase n=1 Tax=Rhizo... [more]
A0A2R5H0D8_9STRA1.100e-555.81Mitochondrial intermediate peptidase, mitochondria... [more]
A0A074SBZ0_9AGAM1.110e-545.61Mitochondrial intermediate peptidase n=5 Tax=Rhizo... [more]
A0A8H3BQ77_9AGAM1.110e-545.61Mitochondrial intermediate peptidase n=1 Tax=Rhizo... [more]
A0A8H3AJ32_9AGAM1.490e-544.44Mitochondrial intermediate peptidase n=1 Tax=Rhizo... [more]
A0A5N5QS07_9AGAM1.520e-547.37Mitochondrial intermediate peptidase n=1 Tax=Cerat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33787contigH-paniculata_contig33787:2096..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FXL4
KEGG koko:K01410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0339@1,KOG2090@2759
EC3.4.24.59
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.01866-CDS-H-paniculata_contig33787:2095..23171622930042.01866-CDS-H-paniculata_contig33787:2095..2317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33787 2096..2317 -
1691481122.7160664-CDS-H-paniculata_contig33787:2095..23171691481122.7160664-CDS-H-paniculata_contig33787:2095..2317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33787 2096..2317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33787.9032.1prot_H-paniculata_contig33787.9032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33787 2096..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33787.9032.1

>prot_H-paniculata_contig33787.9032.1 ID=prot_H-paniculata_contig33787.9032.1|Name=mRNA_H-paniculata_contig33787.9032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
SAGLWCRHFATDPLNRQSGELLWKELMMHGGARDPHRMLRALLDDAGGGG
EEGVRAGIESMLKDMDISSTSSQ*
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mRNA from alignment at H-paniculata_contig33787:2096..2317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33787.9032.1 ID=mRNA_H-paniculata_contig33787.9032.1|Name=mRNA_H-paniculata_contig33787.9032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig33787:2096..2317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTGGCCTATGGTGCAGGCATTTCGCGACAGACCCTCTAAACCGGCA GTCGGGCGAGCTGCTGTGGAAGGAATTGATGATGCACGGCGGGGCGAGAG ACCCGCATCGAATGCTGCGTGCTCTGCTGGACGATGCTGGTGGAGGTGGG GAGGAGGGGGTACGGGCTGGAATCGAGAGCATGCTCAAGGACATGGACAT ATCTTCCACTTCTTCCCAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33787:2096..2317-

>mRNA_H-paniculata_contig33787.9032.1 ID=mRNA_H-paniculata_contig33787.9032.1|Name=mRNA_H-paniculata_contig33787.9032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig33787:2096..2317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCTGGCCTATGGTGCAGGCATTTCGCGACAGACCCTCTAAACCGGCA
GTCGGGCGAGCTGCTGTGGAAGGAATTGATGATGCACGGCGGGGCGAGAG
ACCCGCATCGAATGCTGCGTGCTCTGCTGGACGATGCTGGTGGAGGTGGG
GAGGAGGGGGTACGGGCTGGAATCGAGAGCATGCTCAAGGACATGGACAT
ATCTTCCACTTCTTCCCAGTAATCGGCTGGCCTATGGTGCAGGCATTTCG
CGACAGACCCTCTAAACCGGCAGTCGGGCGAGCTGCTGTGGAAGGAATTG
ATGATGCACGGCGGGGCGAGAGACCCGCATCGAATGCTGCGTGCTCTGCT
GGACGATGCTGGTGGAGGTGGGGAGGAGGGGGTACGGGCTGGAATCGAGA
GCATGCTCAAGGACATGGACATATCTTCCACTTCTTCCCAGTAA
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