mRNA_H-paniculata_contig3378.9031.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3378.9031.1
Unique NamemRNA_H-paniculata_contig3378.9031.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3378.9031.1 vs. uniprot
Match: D8LN52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN52_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 7.840e-93
Identity = 130/244 (53.28%), Postives = 165/244 (67.62%), Query Frame = 1 
Query:    1 MRSVGEMPLHEYHQERRVEPNLRPLEYLIPGPIVLVRYLLLVPVWPMIVVYAEAVSFWPFSSAHKGDHSQAFSDDALWMAPNDWLAVGVPDFDVSDNSSGLDFLYWAIVPHLLWTVISATWIAILGCARLVCWYFGHTEDWSAHPWNVYFASQESPFHVWCAHLQRALGLGFTNFISKELLRVSMGFVVLVTIISLAVQRGTCAEQEWAYVFSHLAWWGIMLIGHLARRRNLFESVRRKPLPTI 732
            MR VGE  LH  H+        R  E+L+PGP+ L R+LL VPVWPM++VY+E  SFWPFS A +GDHS   S+D+LW  P DW  V VP    SDN S L ++YWAIVPHLLWT++SA W+ +LG A LVCWYFGH EDWSAH W VYF+SQESPF VW A LQ ALG+GFT + ++E  R+      L  ++    +RG C EQEWA+VF+  AWW  +LIGH AR++N+F+ +     P +
Sbjct:  204 MRRVGEKTLHLCHESATGNGG-RLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAV 446
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BLAST of mRNA_H-paniculata_contig3378.9031.1 vs. uniprot
Match: A0A6H5JN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN14_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.200e-48
Identity = 77/139 (55.40%), Postives = 95/139 (68.35%), Query Frame = 1 
Query:    1 MRSVGEMPLHEYHQERRVEPNLRPLEYLIPGPIVLVRYLLLVPVWPMIVVYAEAVSFWPFSSAHKGDHSQAFSDDALWMAPNDWLAVGVPDFDVSDNSSGLDFLYWAIVPHLLWTVISATWIAILGCARLVCWYFGHTE 417
            MR VGE  LH  H+        R  E+L+PGP+ L R+LL VPVWPM++VY+E  SFWPFS A +GDHS   S ++LW  P DW  V VP    SDN S + ++YWAIVPHLLWT++SA W+ +LG A LVCWYFGH E
Sbjct:  204 MRRVGEKTLHLCHESATGNGG-RLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSGESLWANPWDWFRVAVPSLSRSDNDSPMSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 341
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BLAST of mRNA_H-paniculata_contig3378.9031.1 vs. uniprot
Match: A0A6H5JNH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 8.760e-30
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:  415 EDWSAHPWNVYFASQESPFHVWCAHLQRALGLGFTNFISKELLRVSMGFVVLVTIISLAVQRGTCAEQEWAYVFSHLAWWGIMLIGHLARRRNLFESV 708
            EDWSAH W VYF+SQESPF VW   LQ ALG+GFT + ++E  R+      L  ++    +RG C EQEWA+VF+  AWW ++LIGH AR++N+F+ +
Sbjct:   10 EDWSAHSWGVYFSSQESPFSVWSWRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIVVLIGHAARKKNIFKPL 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3378.9031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN52_ECTSI7.840e-9353.28Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JN14_9PHAE1.200e-4855.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH5_9PHAE8.760e-3051.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3378contigH-paniculata_contig3378:15513..16244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002780.1
Exons1
Model size732
Cds size732
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.9704607-CDS-H-paniculata_contig3378:15512..162441622930041.9704607-CDS-H-paniculata_contig3378:15512..16244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3378 15513..16244 -
1691481122.703978-CDS-H-paniculata_contig3378:15512..162441691481122.703978-CDS-H-paniculata_contig3378:15512..16244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3378 15513..16244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3378.9031.1prot_H-paniculata_contig3378.9031.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3378 15513..16244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3378.9031.1

>prot_H-paniculata_contig3378.9031.1 ID=prot_H-paniculata_contig3378.9031.1|Name=mRNA_H-paniculata_contig3378.9031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MRSVGEMPLHEYHQERRVEPNLRPLEYLIPGPIVLVRYLLLVPVWPMIVV
YAEAVSFWPFSSAHKGDHSQAFSDDALWMAPNDWLAVGVPDFDVSDNSSG
LDFLYWAIVPHLLWTVISATWIAILGCARLVCWYFGHTEDWSAHPWNVYF
ASQESPFHVWCAHLQRALGLGFTNFISKELLRVSMGFVVLVTIISLAVQR
GTCAEQEWAYVFSHLAWWGIMLIGHLARRRNLFESVRRKPLPTI
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mRNA from alignment at H-paniculata_contig3378:15513..16244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3378.9031.1 ID=mRNA_H-paniculata_contig3378.9031.1|Name=mRNA_H-paniculata_contig3378.9031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=732bp|location=Sequence derived from alignment at H-paniculata_contig3378:15513..16244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAGCGTTGGGGAGATGCCTCTCCACGAGTATCACCAGGAGCGGCG
CGTAGAACCCAACCTTCGACCGTTGGAGTACTTGATTCCGGGGCCGATCG
TGCTCGTGCGGTACCTGTTGCTCGTTCCCGTTTGGCCGATGATCGTTGTC
TACGCAGAAGCCGTATCCTTCTGGCCCTTCAGCTCGGCTCACAAGGGAGA
TCACTCCCAGGCATTCTCCGATGATGCCCTTTGGATGGCACCCAATGATT
GGCTTGCTGTTGGGGTGCCAGATTTTGACGTATCTGACAACAGTAGCGGT
CTCGACTTCCTGTACTGGGCCATCGTGCCTCACCTCCTGTGGACGGTGAT
TTCGGCAACATGGATAGCTATTTTGGGTTGCGCGCGGCTCGTATGCTGGT
ATTTCGGGCATACCGAGGACTGGTCGGCTCACCCCTGGAACGTGTACTTC
GCTAGCCAGGAATCTCCATTCCACGTGTGGTGTGCGCATTTGCAGCGCGC
TCTTGGGCTAGGATTTACGAATTTCATCAGCAAAGAGCTATTACGCGTGT
CCATGGGGTTTGTAGTGCTGGTGACGATTATCAGTCTCGCCGTTCAACGT
GGTACTTGTGCCGAGCAAGAATGGGCCTATGTTTTTTCCCACTTGGCGTG
GTGGGGGATCATGCTGATCGGTCACCTAGCGCGACGTCGAAACTTGTTCG
AGTCGGTTCGCCGAAAGCCTCTCCCTACGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig3378:15513..16244-

>mRNA_H-paniculata_contig3378.9031.1 ID=mRNA_H-paniculata_contig3378.9031.1|Name=mRNA_H-paniculata_contig3378.9031.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig3378:15513..16244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAGCGTTGGGGAGATGCCTCTCCACGAGTATCACCAGGAGCGGCG
CGTAGAACCCAACCTTCGACCGTTGGAGTACTTGATTCCGGGGCCGATCG
TGCTCGTGCGGTACCTGTTGCTCGTTCCCGTTTGGCCGATGATCGTTGTC
TACGCAGAAGCCGTATCCTTCTGGCCCTTCAGCTCGGCTCACAAGGGAGA
TCACTCCCAGGCATTCTCCGATGATGCCCTTTGGATGGCACCCAATGATT
GGCTTGCTGTTGGGGTGCCAGATTTTGACGTATCTGACAACAGTAGCGGT
CTCGACTTCCTGTACTGGGCCATCGTGCCTCACCTCCTGTGGACGGTGAT
TTCGGCAACATGGATAGCTATTTTGGGTTGCGCGCGGCTCGTATGCTGGT
ATTTCGGGCATACCGAGGACTGGTCGGCTCACCCCTGGAACGTGTACTTC
GCTAGCCAGGAATCTCCATTCCACGTGTGGTGTGCGCATTTGCAGCGCGC
TCTTGGGCTAGGATTTACGAATTTCATCAGCAAAGAGCTATTACGCGTGT
CCATGGGGTTTGTAGTGCTGGTGACGATTATCAGTCTCGCCGTTCAACGT
GGTACTTGTGCCGAGCAAGAATGGGCCTATGTTTTTTCCCACTTGGCGTG
GTGGGGGATCATGCTGATCGGTCACCTAGCGCGACGTCGAAACTTGTTCG
AGTCGGTTCGCCGAAAGCCTCTCCCTACGATTATGAGAAGCGTTGGGGAG
ATGCCTCTCCACGAGTATCACCAGGAGCGGCGCGTAGAACCCAACCTTCG
ACCGTTGGAGTACTTGATTCCGGGGCCGATCGTGCTCGTGCGGTACCTGT
TGCTCGTTCCCGTTTGGCCGATGATCGTTGTCTACGCAGAAGCCGTATCC
TTCTGGCCCTTCAGCTCGGCTCACAAGGGAGATCACTCCCAGGCATTCTC
CGATGATGCCCTTTGGATGGCACCCAATGATTGGCTTGCTGTTGGGGTGC
CAGATTTTGACGTATCTGACAACAGTAGCGGTCTCGACTTCCTGTACTGG
GCCATCGTGCCTCACCTCCTGTGGACGGTGATTTCGGCAACATGGATAGC
TATTTTGGGTTGCGCGCGGCTCGTATGCTGGTATTTCGGGCATACCGAGG
ACTGGTCGGCTCACCCCTGGAACGTGTACTTCGCTAGCCAGGAATCTCCA
TTCCACGTGTGGTGTGCGCATTTGCAGCGCGCTCTTGGGCTAGGATTTAC
GAATTTCATCAGCAAAGAGCTATTACGCGTGTCCATGGGGTTTGTAGTGC
TGGTGACGATTATCAGTCTCGCCGTTCAACGTGGTACTTGTGCCGAGCAA
GAATGGGCCTATGTTTTTTCCCACTTGGCGTGGTGGGGGATCATGCTGAT
CGGTCACCTAGCGCGACGTCGAAACTTGTTCGAGTCGGTTCGCCGAAAGC
CTCTCCCTACGATT
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