prot_H-paniculata_contig3378.9030.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3378.9030.1
Unique Nameprot_H-paniculata_contig3378.9030.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length121
Homology
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BLAST of mRNA_H-paniculata_contig3378.9030.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.970e-21
Identity = 64/115 (55.65%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:   37 RSELGAGRALFGGFVPARHAPTASLYDFSG-----------------------SSMISENSGVVA--------GGSLASLDDARVRQYTQEATARAQRLGAEKRNTKISKSRRQG 120
            RSE+GAGRALFGGFVP RHAP ASLYDF G                       SS+ S  + VV         GG L +LDDARVRQYTQEAT RAQRLGAEKR+++I+KS+RQG
Sbjct: 1197 RSEVGAGRALFGGFVPRRHAPAASLYDFGGKGQGAGSEQGGGETGGDGGFAGVSSLPSIYNQVVGRGLVPAGGGGVLETLDDARVRQYTQEATTRAQRLGAEKRSSRITKSKRQG 1311
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BLAST of mRNA_H-paniculata_contig3378.9030.1 vs. uniprot
Match: D8LN42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN42_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 4.580e-21
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:   37 RSELGAGRALFGGFVPARHAPTASLYDFSGS--------------------------SMISENSG---VVAGGS--LASLDDARVRQYTQEATARAQRLGAEKRNTKISKSRRQG 120
            RSE+GAGRALFGGFVP RHAP ASLYDF G                           S+ ++  G   V AGG   L +LDDARVRQYTQEAT RAQRLGAEKR+++I+KS+RQG
Sbjct:  288 RSEVGAGRALFGGFVPRRHAPAASLYDFGGKGQGAGSEQGGGETGRDGGFAGVSSLPSIYNQGGGRGLVPAGGGGVLETLDDARVRQYTQEATTRAQRLGAEKRSSRITKSKRQG 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3378.9030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSW4_9PHAE3.970e-2155.65DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN42_ECTSI4.580e-2154.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3378contigH-paniculata_contig3378:11413..11775 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3378.9030.1mRNA_H-paniculata_contig3378.9030.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3378 11413..12999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3378.9030.1 ID=prot_H-paniculata_contig3378.9030.1|Name=mRNA_H-paniculata_contig3378.9030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
SASGVVIGSSGHKKSGKKKQARKGDSSPGAAGTSQLRSELGAGRALFGGF
VPARHAPTASLYDFSGSSMISENSGVVAGGSLASLDDARVRQYTQEATAR
AQRLGAEKRNTKISKSRRQG*
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