mRNA_H-paniculata_contig3378.9030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3378.9030.1
Unique NamemRNA_H-paniculata_contig3378.9030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3378.9030.1 vs. uniprot
Match: D8LN42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN42_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.220e-18
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:  109 RSELGAGRALFGGFVPARHAPTASLYDFSGS--------------------------SMISENSG---VVAGGS--LASLDDARVRQYTQEATARAQRLGAEKRNTKISKSRRQG 360
            RSE+GAGRALFGGFVP RHAP ASLYDF G                           S+ ++  G   V AGG   L +LDDARVRQYTQEAT RAQRLGAEKR+++I+KS+RQG
Sbjct:  288 RSEVGAGRALFGGFVPRRHAPAASLYDFGGKGQGAGSEQGGGETGRDGGFAGVSSLPSIYNQGGGRGLVPAGGGGVLETLDDARVRQYTQEATTRAQRLGAEKRSSRITKSKRQG 402
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BLAST of mRNA_H-paniculata_contig3378.9030.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.390e-17
Identity = 64/115 (55.65%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:  109 RSELGAGRALFGGFVPARHAPTASLYDFSG-----------------------SSMISENSGVVA--------GGSLASLDDARVRQYTQEATARAQRLGAEKRNTKISKSRRQG 360
            RSE+GAGRALFGGFVP RHAP ASLYDF G                       SS+ S  + VV         GG L +LDDARVRQYTQEAT RAQRLGAEKR+++I+KS+RQG
Sbjct: 1197 RSEVGAGRALFGGFVPRRHAPAASLYDFGGKGQGAGSEQGGGETGGDGGFAGVSSLPSIYNQVVGRGLVPAGGGGVLETLDDARVRQYTQEATTRAQRLGAEKRSSRITKSKRQG 1311
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3378.9030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN42_ECTSI6.220e-1854.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSW4_9PHAE1.390e-1755.65DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3378contigH-paniculata_contig3378:11413..12999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D8LN42
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1587
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.8906267-CDS-H-paniculata_contig3378:11412..117751622930041.8906267-CDS-H-paniculata_contig3378:11412..11775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3378 11413..11775 +
1691481122.677132-CDS-H-paniculata_contig3378:11412..117751691481122.677132-CDS-H-paniculata_contig3378:11412..11775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3378 11413..11775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.9065623-UTR-H-paniculata_contig3378:11775..129991622930041.9065623-UTR-H-paniculata_contig3378:11775..12999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3378 11776..12999 +
1691481122.6909456-UTR-H-paniculata_contig3378:11775..129991691481122.6909456-UTR-H-paniculata_contig3378:11775..12999Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3378 11776..12999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3378.9030.1prot_H-paniculata_contig3378.9030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3378 11413..11775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3378.9030.1

>prot_H-paniculata_contig3378.9030.1 ID=prot_H-paniculata_contig3378.9030.1|Name=mRNA_H-paniculata_contig3378.9030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
SASGVVIGSSGHKKSGKKKQARKGDSSPGAAGTSQLRSELGAGRALFGGF
VPARHAPTASLYDFSGSSMISENSGVVAGGSLASLDDARVRQYTQEATAR
AQRLGAEKRNTKISKSRRQG*
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mRNA from alignment at H-paniculata_contig3378:11413..12999+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3378.9030.1 ID=mRNA_H-paniculata_contig3378.9030.1|Name=mRNA_H-paniculata_contig3378.9030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1587bp|location=Sequence derived from alignment at H-paniculata_contig3378:11413..12999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGCCAGTGGCGTTGTCATCGGCAGCAGTGGCCACAAAAAAAGCGGGAA
GAAGAAGCAAGCAAGAAAAGGCGACTCCTCCCCAGGCGCCGCCGGCACTT
CACAGTTGAGGTCCGAACTTGGTGCAGGTCGTGCGCTGTTCGGCGGATTT
GTGCCCGCAAGACACGCTCCCACGGCATCCCTTTATGACTTCAGCGGTTC
CAGCATGATCTCGGAGAATAGTGGCGTCGTAGCGGGGGGCAGTTTAGCGT
CATTGGACGATGCAAGAGTGAGACAGTACACGCAGGAGGCGACCGCACGC
GCGCAGAGGCTAGGCGCGGAGAAGAGGAATACTAAGATATCTAAGTCGAG
GCGGCAAGGATAGGTAAAAAAGCTATCTATGCAATTGCTCAGCGTGAGTG
GCACAAGAGTGAGTTAGTGAGCGCGTGGTAGCTTTTTTTCCGTGATAGTA
TAAAGGGTACATTAAGAGCTGACCGAAGGATGCACAGCACGTAGTAGTTT
TTTTGGACGGTAGCGTCGCTGTGTTGCGTTGTATTGTGTTGTCTCACCCA
CTGCTGCACACGTACTCTACGCGTATCCCGTAACTTATATTGTTCTCAAG
ATTACAGGAACCAATCTGCGATTTTGGCTATATTATATCAAGTGTGGATT
ACCGTACTTCGTGTGCACTTTGACGTTGGTGTCGGCTGTTCTGTCTTCCA
TCCTCGGCCAGGTTTGGTGGAGGTTTCAGCGGGTGAGGGCACAGCGTCTT
CTGTGTGATGGGATGTTTAGGTCAATTTTGCTTCTTTTTTATTCCTGTGT
GATGTTTTTTTCTGGTGGATGGAGGCTCTGCCCTTAATATAGTCATTTTA
AACAGAAGAGCTGCATGCATTGTGAGCGAAGTAACTGATTGGTTGCCCCC
CCCCCCCCCTCCGCCCCTCTCTTTCGATTAGTTTCTCATTCGTCTCGAGA
GATCTAGAGTTTGAATATTGCACGAGAATGAGAAGGGGTACAAAGAAGTA
TACTGCTTGAGTTTTCCAAGACTTATCGTTAGTAAACTCATCGCGTACAT
CGAACAGGCTCATCAGATGGAGCGTTATCGTAGTAGGTCGAAATAGGCGA
TTCTCGCGGTGTTCTATATGTATGCTATAGGAATCACTTGGCTGACTTTA
GGTGTGATTCAGCGAGCACTCCGGCATAGGGAGGGTCCAACCCCCCCCCT
TATGTACCAACATTTTTGTGCAGTTCGAACTCTCGCAGATGCACAAAAGA
AAGCGTTATTTTCATCTCAAAAGCTCCAAAAATTGCTTCAAATGTTGGCC
TATAACGAGCAGTTGAGACTTTTGGAGTTTTGTAATCAAGGATTTTTGTT
CCGAAATTTCCGGTCACTTTAATGGAGAAAACTGATTTTTTGTTTTTCTT
TCATCTGCTGAGGGGGTGAGAAAGGCGTGTGGGCGAAATACGAACATACG
CCCACATAATGTTTTTGTTTTTTCTGCAAGTCTTGAGGCAATGAGGAGGA
ATGCAAATGATTGGCGATGGCGAAGACGCGAAAACTGCAAACATCACGGC
AAATTGGAGGCGTGATTCGAGATCTTCTAGGTAGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3378:11413..12999+

>mRNA_H-paniculata_contig3378.9030.1 ID=mRNA_H-paniculata_contig3378.9030.1|Name=mRNA_H-paniculata_contig3378.9030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig3378:11413..12999+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGCCAGTGGCGTTGTCATCGGCAGCAGTGGCCACAAAAAAAGCGGGAA
GAAGAAGCAAGCAAGAAAAGGCGACTCCTCCCCAGGCGCCGCCGGCACTT
CACAGTTGAGGTCCGAACTTGGTGCAGGTCGTGCGCTGTTCGGCGGATTT
GTGCCCGCAAGACACGCTCCCACGGCATCCCTTTATGACTTCAGCGGTTC
CAGCATGATCTCGGAGAATAGTGGCGTCGTAGCGGGGGGCAGTTTAGCGT
CATTGGACGATGCAAGAGTGAGACAGTACACGCAGGAGGCGACCGCACGC
GCGCAGAGGCTAGGCGCGGAGAAGAGGAATACTAAGATATCTAAGTCGAG
GCGGCAAGGATAGTCTGCCAGTGGCGTTGTCATCGGCAGCAGTGGCCACA
AAAAAAGCGGGAAGAAGAAGCAAGCAAGAAAAGGCGACTCCTCCCCAGGC
GCCGCCGGCACTTCACAGTTGAGGTCCGAACTTGGTGCAGGTCGTGCGCT
GTTCGGCGGATTTGTGCCCGCAAGACACGCTCCCACGGCATCCCTTTATG
ACTTCAGCGGTTCCAGCATGATCTCGGAGAATAGTGGCGTCGTAGCGGGG
GGCAGTTTAGCGTCATTGGACGATGCAAGAGTGAGACAGTACACGCAGGA
GGCGACCGCACGCGCGCAGAGGCTAGGCGCGGAGAAGAGGAATACTAAGA
TATCTAAGTCGAGGCGGCAAGGATAG
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