prot_H-paniculata_contig33779.9027.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig33779.9027.1
Unique Name	prot_H-paniculata_contig33779.9027.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	112

Homology

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 79.0 bits (193), Expect = 1.160e-15
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 0

Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 107
            H+R GH+         ++      +GI+   K GVC+ CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KS++L  LK++ +D+
Sbjct:    5 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.490e-15
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 0

Query:   24 KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDVA 108
            K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ K ++
Sbjct:   15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIKGIS 100

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.300e-15
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 0

Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 107
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   71 HQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.340e-15
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 0

Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 107
            H+R GH+         ++      +GI+   K G+C+ CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   75 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.390e-15
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 0

Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 107
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.060e-15
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 0

Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 107
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 76.6 bits (187), Expect = 8.670e-15
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 0

Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDVA 108
            H+R GH+         ++     ++GI+   K GV   CE+ K +K+       ER  EPLEL+ TD+ GP+  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ KD++
Sbjct:    5 HKRFGHINYEYLRQMGEIDDTGVRKGIK---KPGVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDIS 118

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 78.2 bits (191), Expect = 1.550e-14
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 0

Query:    1 HERLGHVRDLPTVTRQQGIRLNG------KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPV-NKSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFE 104
            H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  K  R   PLEL+ TD+ GP+ N+S GG ++ I F+DDYSRM  V  LR KS  +   KKF+
Sbjct:  375 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485

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BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-14
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 0

Query:    1 HERLGHVRDLPTVTRQQGIRLNG------KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPV-NKSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFE 104
            H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  K  R   PLEL+ TD+ GP+ N+S GG ++ I F+DDYSRM  V  LR KS  +   KKF+
Sbjct:   67 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 177

[Close]

BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.880e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0

Query:   24 KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKD 106
            K   C  CE+ K +K+       ER  EPLELV TD+ GP+  +S GG R+AI F DDY+R R V T+R+KSE+L  LK++ KD
Sbjct:    1 KPSACGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKD 84

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
K8YS61_NANGC	1.160e-15	39.66	Retrovirus-related pol polyprotein from transposon...	[more]
W7SYS1_9STRA	2.490e-15	47.67	Retrovirus-related pol polyprotein from transposon...	[more]
W7T174_9STRA	3.300e-15	40.52	Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita...	[more]
W7T9I7_9STRA	4.340e-15	39.66	Copia-like retrotransposable element n=1 Tax=Nanno...	[more]
W7TGQ6_9STRA	4.390e-15	40.52	Retrotransposon unclassified n=1 Tax=Nannochlorops...	[more]
W7TIQ5_9STRA	8.060e-15	40.52	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
K8Z011_NANGC	8.670e-15	38.46	Retrovirus-related pol polyprotein from transposon...	[more]
A0A4Y1REW6_PRUDU	1.550e-14	41.44	Transposable element protein n=1 Tax=Prunus dulcis...	[more]
A0A4Y1R3A1_PRUDU	1.560e-14	41.44	BURP domain-containing protein n=1 Tax=Prunus dulc...	[more]
W7T9C2_9STRA	1.880e-14	48.81	Copia-like retrotransposable element (Fragment) n=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 42..111 e-value: 1.2E-6 score: 29.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 48..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig33779	contig	H-paniculata_contig33779:849..1184 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig33779.9027.1	mRNA_H-paniculata_contig33779.9027.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig33779 849..1184 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig33779.9027.1 ID=prot_H-paniculata_contig33779.9027.1|Name=mRNA_H-paniculata_contig33779.9027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
HERLGHVRDLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMT
EPLELVDTDIAGPVNKSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWAL
KKFEKDVARTNG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf