mRNA_H-paniculata_contig33779.9027.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33779.9027.1
Unique NamemRNA_H-paniculata_contig33779.9027.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 79.0 bits (193), Expect = 1.160e-15
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 321
            H+R GH+         ++      +GI+   K GVC+ CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KS++L  LK++ +D+
Sbjct:    5 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.490e-15
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   70 KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDVA 324
            K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ K ++
Sbjct:   15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIKGIS 100          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.300e-15
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 321
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   71 HQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.340e-15
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 321
            H+R GH+         ++      +GI+   K G+C+ CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   75 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.390e-15
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 321
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.060e-15
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDV 321
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELV TD+ GPV  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 76.6 bits (187), Expect = 8.670e-15
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 1
Query:    1 HERLGHVR--------DLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKDVA 324
            H+R GH+         ++     ++GI+   K GV   CE+ K +K+       ER  EPLEL+ TD+ GP+  +S GG R+AI F DDY+R R V  ++ KSE+L  LK++ KD++
Sbjct:    5 HKRFGHINYEYLRQMGEIDDTGVRKGIK---KPGVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDIS 118          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 78.2 bits (191), Expect = 1.550e-14
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 HERLGHVRDLPTVTRQQGIRLNG------KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPV-NKSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFE 312
            H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  K  R   PLEL+ TD+ GP+ N+S GG ++ I F+DDYSRM  V  LR KS  +   KKF+
Sbjct:  375 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-14
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 HERLGHVRDLPTVTRQQGIRLNG------KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPV-NKSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFE 312
            H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  K  R   PLEL+ TD+ GP+ N+S GG ++ I F+DDYSRM  V  LR KS  +   KKF+
Sbjct:   67 HRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 177          
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.880e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   70 KLGVCSACEKGKASKQPVKKYKEERMTEPLELVDTDIAGPVN-KSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWALKKFEKD 318
            K   C  CE+ K +K+       ER  EPLELV TD+ GP+  +S GG R+AI F DDY+R R V T+R+KSE+L  LK++ KD
Sbjct:    1 KPSACGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKD 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33779.9027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC1.160e-1539.66Retrovirus-related pol polyprotein from transposon... [more]
W7SYS1_9STRA2.490e-1547.67Retrovirus-related pol polyprotein from transposon... [more]
W7T174_9STRA3.300e-1540.52Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA4.340e-1539.66Copia-like retrotransposable element n=1 Tax=Nanno... [more]
W7TGQ6_9STRA4.390e-1540.52Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA8.060e-1540.52Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
K8Z011_NANGC8.670e-1538.46Retrovirus-related pol polyprotein from transposon... [more]
A0A4Y1REW6_PRUDU1.550e-1441.44Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU1.560e-1441.44BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
W7T9C2_9STRA1.880e-1448.81Copia-like retrotransposable element (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33779contigH-paniculata_contig33779:849..1184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue4e-11
Seed eggNOG ortholog225117.XP_009362851.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs389M0@33090,3GYSF@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.6580472-CDS-H-paniculata_contig33779:848..11841622930041.6580472-CDS-H-paniculata_contig33779:848..1184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33779 849..1184 +
1691481122.5601974-CDS-H-paniculata_contig33779:848..11841691481122.5601974-CDS-H-paniculata_contig33779:848..1184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33779 849..1184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33779.9027.1prot_H-paniculata_contig33779.9027.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33779 849..1184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33779.9027.1

>prot_H-paniculata_contig33779.9027.1 ID=prot_H-paniculata_contig33779.9027.1|Name=mRNA_H-paniculata_contig33779.9027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
HERLGHVRDLPTVTRQQGIRLNGKLGVCSACEKGKASKQPVKKYKEERMT
EPLELVDTDIAGPVNKSFGGCRFAIIFVDDYSRMRKVCTLRQKSEALWAL
KKFEKDVARTNG
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mRNA from alignment at H-paniculata_contig33779:849..1184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33779.9027.1 ID=mRNA_H-paniculata_contig33779.9027.1|Name=mRNA_H-paniculata_contig33779.9027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig33779:849..1184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAGCGACTTGGGCATGTTCGAGACCTTCCCACCGTCACGCGGCAACA AGGTATAAGGTTAAACGGGAAGCTCGGCGTCTGCTCAGCGTGTGAGAAGG GGAAAGCGTCGAAGCAGCCTGTAAAGAAGTATAAAGAAGAGCGGATGACC GAGCCGTTGGAGCTGGTGGACACCGACATAGCCGGACCGGTGAACAAGTC CTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGACGACTACAGCAGAA TGCGCAAAGTCTGTACCTTGCGACAAAAGTCCGAGGCGCTATGGGCCCTG AAGAAATTCGAGAAGGATGTAGCGAGGACAAACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig33779:849..1184+

>mRNA_H-paniculata_contig33779.9027.1 ID=mRNA_H-paniculata_contig33779.9027.1|Name=mRNA_H-paniculata_contig33779.9027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig33779:849..1184+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGAGCGACTTGGGCATGTTCGAGACCTTCCCACCGTCACGCGGCAACA
AGGTATAAGGTTAAACGGGAAGCTCGGCGTCTGCTCAGCGTGTGAGAAGG
GGAAAGCGTCGAAGCAGCCTGTAAAGAAGTATAAAGAAGAGCGGATGACC
GAGCCGTTGGAGCTGGTGGACACCGACATAGCCGGACCGGTGAACAAGTC
CTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGACGACTACAGCAGAA
TGCGCAAAGTCTGTACCTTGCGACAAAAGTCCGAGGCGCTATGGGCCCTG
AAGAAATTCGAGAAGGATGTAGCGAGGACAAACGGTCACGAGCGACTTGG
GCATGTTCGAGACCTTCCCACCGTCACGCGGCAACAAGGTATAAGGTTAA
ACGGGAAGCTCGGCGTCTGCTCAGCGTGTGAGAAGGGGAAAGCGTCGAAG
CAGCCTGTAAAGAAGTATAAAGAAGAGCGGATGACCGAGCCGTTGGAGCT
GGTGGACACCGACATAGCCGGACCGGTGAACAAGTCCTTCGGAGGATGTC
GCTTCGCCATCATCTTCGTCGACGACTACAGCAGAATGCGCAAAGTCTGT
ACCTTGCGACAAAAGTCCGAGGCGCTATGGGCCCTGAAGAAATTCGAGAA
GGATGTAGCGAGGACAAACGGT
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