mRNA_H-paniculata_contig3377.9025.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3377.9025.1
Unique NamemRNA_H-paniculata_contig3377.9025.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3377.9025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3377contigH-paniculata_contig3377:11345..12631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1289
Cds size1287
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.561401-CDS-H-paniculata_contig3377:11344..126311622930041.561401-CDS-H-paniculata_contig3377:11344..12631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3377 11345..12631 +
1691481122.5357087-CDS-H-paniculata_contig3377:11344..126311691481122.5357087-CDS-H-paniculata_contig3377:11344..12631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3377 11345..12631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3377.9025.1prot_H-paniculata_contig3377.9025.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3377 11345..12631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3377.9025.1

>prot_H-paniculata_contig3377.9025.1 ID=prot_H-paniculata_contig3377.9025.1|Name=mRNA_H-paniculata_contig3377.9025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=429bp
DRERGSGNRGRGSSGIRGGRDELVSLPNQGDLRHSGGGRDYSPLAGPEVR
EPWSGPGGSGGNNREYSRDNLPRATHHHNRPPPPVVIEPSSGAVGVGREW
ERSPHAHQRGGPRPDRDWPINGAGNFGFAGDDNRGEGGGGGFTGANSGDR
GGLRFNVRGGSFRDDIRGGGGHRDLGGYPPDFPPGGRPEAHVVAHEAWDQ
PPRRFSSRDRGGGGGGGGSGPLLHSPPPGGWNNPSQGPPPFASDRVVYDS
RHPPRGGNPGHGNGSFGGGYDSYVHGPGLGGPPPPLGGFDSRERHQRRNN
SSRSRSRERGGGGGYQGRDSSIGRDRNNNRMGGGGGRGSYRRSPPPRGRP
RGGSPVGRSPPPYIARGRRGGRGYSGGASLPRGVGGRDEYHPSSSGGVPY
RNGGSSGGRGNLRYVNGGRGGGHHGGDHH
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mRNA from alignment at H-paniculata_contig3377:11345..12631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3377.9025.1 ID=mRNA_H-paniculata_contig3377.9025.1|Name=mRNA_H-paniculata_contig3377.9025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-paniculata_contig3377:11345..12631+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGGGAGCGGGGATCCGGGAATAGAGGGCGTGGGAGTAGCGGTATTCG
AGGAGGGAGGGATGAACTTGTCTCTTTGCCGAATCAAGGCGACCTCCGAC
ACTCAGGCGGCGGGAGGGACTACAGCCCTCTTGCTGGTCCCGAAGTGAGG
GAACCATGGTCGGGGCCGGGAGGCAGCGGGGGGAACAACCGCGAGTACTC
CAGGGATAATCTGCCGCGCGCTACTCACCATCACAATCGCCCACCACCGC
CAGTTGTTATCGAGCCCAGCAGTGGAGCGGTCGGCGTGGGAAGGGAATGG
GAGCGTAGCCCTCATGCTCATCAACGCGGTGGCCCTCGACCGGATCGAGA
TTGGCCAATCAACGGCGCCGGCAACTTCGGTTTTGCCGGAGATGACAACA
GGGGCGAAGGAGGGGGCGGCGGCTTTACCGGGGCGAACTCCGGAGATAGG
GGCGGTCTGCGATTCAACGTCCGGGGTGGTAGCTTCAGAGATGATATAAG
GGGCGGCGGTGGTCATCGAGACCTTGGAGGATATCCCCCAGATTTTCCTC
CAGGTGGACGCCCCGAGGCCCACGTTGTAGCACACGAGGCTTGGGATCAG
CCGCCGCGTCGATTTAGCTCGCGTGATCGCGGCGGCGGCGGCGGCGGTGG
CGGAAGCGGCCCTCTACTACACAGCCCTCCTCCCGGCGGCTGGAACAACC
CTAGTCAAGGACCGCCGCCTTTCGCGTCAGATAGAGTGGTTTACGATTCC
CGCCACCCTCCACGCGGCGGAAACCCAGGCCACGGCAACGGGAGCTTTGG
CGGGGGTTATGACAGCTATGTTCATGGTCCCGGGTTGGGTGGGCCTCCTC
CTCCTCTAGGTGGATTCGACTCGAGGGAGCGACACCAACGACGCAACAAC
TCAAGTCGTAGCCGGAGTAGGGAGAGGGGTGGCGGCGGGGGGTATCAAGG
GCGTGACTCTAGTATTGGTCGAGATCGAAACAACAATAGGATGGGCGGGG
GTGGAGGTCGGGGGTCCTATCGAAGGTCCCCACCACCAAGAGGACGTCCA
CGAGGCGGTTCGCCCGTAGGGCGTTCTCCTCCTCCCTATATTGCCCGTGG
CCGTCGGGGAGGTAGAGGGTACTCGGGCGGAGCCTCTCTTCCCAGGGGAG
TAGGTGGGCGAGATGAGTACCACCCTTCGTCGTCGGGCGGAGTTCCTTAT
AGGAACGGTGGCAGCAGCGGGGGTAGAGGAAACCTTCGTTACGTGAACGG
TGGGCGTGGGGGGGGGCATCATGGCGGCGATCATCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3377:11345..12631+

>mRNA_H-paniculata_contig3377.9025.1 ID=mRNA_H-paniculata_contig3377.9025.1|Name=mRNA_H-paniculata_contig3377.9025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at H-paniculata_contig3377:11345..12631+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGGGAGCGGGGATCCGGGAATAGAGGGCGTGGGAGTAGCGGTATTCG
AGGAGGGAGGGATGAACTTGTCTCTTTGCCGAATCAAGGCGACCTCCGAC
ACTCAGGCGGCGGGAGGGACTACAGCCCTCTTGCTGGTCCCGAAGTGAGG
GAACCATGGTCGGGGCCGGGAGGCAGCGGGGGGAACAACCGCGAGTACTC
CAGGGATAATCTGCCGCGCGCTACTCACCATCACAATCGCCCACCACCGC
CAGTTGTTATCGAGCCCAGCAGTGGAGCGGTCGGCGTGGGAAGGGAATGG
GAGCGTAGCCCTCATGCTCATCAACGCGGTGGCCCTCGACCGGATCGAGA
TTGGCCAATCAACGGCGCCGGCAACTTCGGTTTTGCCGGAGATGACAACA
GGGGCGAAGGAGGGGGCGGCGGCTTTACCGGGGCGAACTCCGGAGATAGG
GGCGGTCTGCGATTCAACGTCCGGGGTGGTAGCTTCAGAGATGATATAAG
GGGCGGCGGTGGTCATCGAGACCTTGGAGGATATCCCCCAGATTTTCCTC
CAGGTGGACGCCCCGAGGCCCACGTTGTAGCACACGAGGCTTGGGATCAG
CCGCCGCGTCGATTTAGCTCGCGTGATCGCGGCGGCGGCGGCGGCGGTGG
CGGAAGCGGCCCTCTACTACACAGCCCTCCTCCCGGCGGCTGGAACAACC
CTAGTCAAGGACCGCCGCCTTTCGCGTCAGATAGAGTGGTTTACGATTCC
CGCCACCCTCCACGCGGCGGAAACCCAGGCCACGGCAACGGGAGCTTTGG
CGGGGGTTATGACAGCTATGTTCATGGTCCCGGGTTGGGTGGGCCTCCTC
CTCCTCTAGGTGGATTCGACTCGAGGGAGCGACACCAACGACGCAACAAC
TCAAGTCGTAGCCGGAGTAGGGAGAGGGGTGGCGGCGGGGGGTATCAAGG
GCGTGACTCTAGTATTGGTCGAGATCGAAACAACAATAGGATGGGCGGGG
GTGGAGGTCGGGGGTCCTATCGAAGGTCCCCACCACCAAGAGGACGTCCA
CGAGGCGGTTCGCCCGTAGGGCGTTCTCCTCCTCCCTATATTGCCCGTGG
CCGTCGGGGAGGTAGAGGGTACTCGGGCGGAGCCTCTCTTCCCAGGGGAG
TAGGTGGGCGAGATGAGTACCACCCTTCGTCGTCGGGCGGAGTTCCTTAT
AGGAACGGTGGCAGCAGCGGGGGTAGAGGAAACCTTCGTTACGTGAACGG
TGGGCGTGGGGGGGGGCATCATGGCGGCGATCATCACGACAGGGAGCGGG
GATCCGGGAATAGAGGGCGTGGGAGTAGCGGTATTCGAGGAGGGAGGGAT
GAACTTGTCTCTTTGCCGAATCAAGGCGACCTCCGACACTCAGGCGGCGG
GAGGGACTACAGCCCTCTTGCTGGTCCCGAAGTGAGGGAACCATGGTCGG
GGCCGGGAGGCAGCGGGGGGAACAACCGCGAGTACTCCAGGGATAATCTG
CCGCGCGCTACTCACCATCACAATCGCCCACCACCGCCAGTTGTTATCGA
GCCCAGCAGTGGAGCGGTCGGCGTGGGAAGGGAATGGGAGCGTAGCCCTC
ATGCTCATCAACGCGGTGGCCCTCGACCGGATCGAGATTGGCCAATCAAC
GGCGCCGGCAACTTCGGTTTTGCCGGAGATGACAACAGGGGCGAAGGAGG
GGGCGGCGGCTTTACCGGGGCGAACTCCGGAGATAGGGGCGGTCTGCGAT
TCAACGTCCGGGGTGGTAGCTTCAGAGATGATATAAGGGGCGGCGGTGGT
CATCGAGACCTTGGAGGATATCCCCCAGATTTTCCTCCAGGTGGACGCCC
CGAGGCCCACGTTGTAGCACACGAGGCTTGGGATCAGCCGCCGCGTCGAT
TTAGCTCGCGTGATCGCGGCGGCGGCGGCGGCGGTGGCGGAAGCGGCCCT
CTACTACACAGCCCTCCTCCCGGCGGCTGGAACAACCCTAGTCAAGGACC
GCCGCCTTTCGCGTCAGATAGAGTGGTTTACGATTCCCGCCACCCTCCAC
GCGGCGGAAACCCAGGCCACGGCAACGGGAGCTTTGGCGGGGGTTATGAC
AGCTATGTTCATGGTCCCGGGTTGGGTGGGCCTCCTCCTCCTCTAGGTGG
ATTCGACTCGAGGGAGCGACACCAACGACGCAACAACTCAAGTCGTAGCC
GGAGTAGGGAGAGGGGTGGCGGCGGGGGGTATCAAGGGCGTGACTCTAGT
ATTGGTCGAGATCGAAACAACAATAGGATGGGCGGGGGTGGAGGTCGGGG
GTCCTATCGAAGGTCCCCACCACCAAGAGGACGTCCACGAGGCGGTTCGC
CCGTAGGGCGTTCTCCTCCTCCCTATATTGCCCGTGGCCGTCGGGGAGGT
AGAGGGTACTCGGGCGGAGCCTCTCTTCCCAGGGGAGTAGGTGGGCGAGA
TGAGTACCACCCTTCGTCGTCGGGCGGAGTTCCTTATAGGAACGGTGGCA
GCAGCGGGGGTAGAGGAAACCTTCGTTACGTGAACGGTGGGCGTGGGGGG
GGGCATCATGGCGGCGATCATCAC
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