mRNA_H-paniculata_contig3377.9024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3377.9024.1
Unique NamemRNA_H-paniculata_contig3377.9024.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3377.9024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3377contigH-paniculata_contig3377:9447..11323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3377.9024.1prot_H-paniculata_contig3377.9024.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3377 9668..11323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.46991-UTR-H-paniculata_contig3377:9446..96671622930041.46991-UTR-H-paniculata_contig3377:9446..9667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3377 9447..9667 +
1691481122.5079422-UTR-H-paniculata_contig3377:9446..96671691481122.5079422-UTR-H-paniculata_contig3377:9446..9667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3377 9447..9667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.488814-CDS-H-paniculata_contig3377:9667..97021622930041.488814-CDS-H-paniculata_contig3377:9667..9702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3377 9668..9702 +
1691481122.5179994-CDS-H-paniculata_contig3377:9667..97021691481122.5179994-CDS-H-paniculata_contig3377:9667..9702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3377 9668..9702 +
1622930041.5111425-CDS-H-paniculata_contig3377:11121..113231622930041.5111425-CDS-H-paniculata_contig3377:11121..11323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3377 11122..11323 +
1691481122.5267143-CDS-H-paniculata_contig3377:11121..113231691481122.5267143-CDS-H-paniculata_contig3377:11121..11323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3377 11122..11323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3377.9024.1

>prot_H-paniculata_contig3377.9024.1 ID=prot_H-paniculata_contig3377.9024.1|Name=mRNA_H-paniculata_contig3377.9024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MGNNRFTGGENSSPHRRIHMTNDHHGSSPPGRRRQLPHSTTSYANQSVPG
SNGGAQWKSVNSGGRGGVDGRRRSDGGGG
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mRNA from alignment at H-paniculata_contig3377:9447..11323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3377.9024.1 ID=mRNA_H-paniculata_contig3377.9024.1|Name=mRNA_H-paniculata_contig3377.9024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1877bp|location=Sequence derived from alignment at H-paniculata_contig3377:9447..11323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATAAACACGATCAAAACATTTTGAAGACAAAGGAAACCCACTAACAAA
CTCTCTCCATTCGCTTGAGTGGGCAATACTGGGGAGGGGGCTTATCTTCG
GCCGTGATCTGGTGCCTCTTCCATAGAGTGCTGCTCAGGGGTATAACGGT
GGGACATTTTTCGACACCAGGTGTTTTTTTTCGCAATAATCAGCCAGCAT
CTTGTTTGAAAGAGAGCGACTATGGGCAACAACAGGTTCACTGGTGGCGA
AAACAGGTAGGTGCGTGTGTCCTTCACTCTTTTGTACGGTCCGGTGCATG
TTGTAGATGGCTTTGATGGGGTTGGTCTTTGATGCGTTGTCTCGGCAGCA
CTGCTAGTTTAGACGCGGCTTGGTGCCGTACATATGTCATCTGTCTTGCC
TGTCTTTTGCATAAGCAGCGCTTTGCAAAGGCAAGCCGTTGGGAGCGATC
ACGGAGCCCCCTCACACAATCAAGGAAAATTGAAGGTATTTTCATTATAC
AAGTTGTAGTATAGGTTCTTTGCTCTAGGGTGATGGATGGGGTTCGGTGG
CAATTTAGCTCATGGCATCAGGATAGTGTGACGTGCGGTTTGATACCATG
TACGATGCAGTCGGGAGTGAGCTGATCTGTTGGTGACTCCAAGATGCTAT
AAATGTGTGCCGGCTCTAAGGTTTCGATTTATGAATTGGAACCTGCTCGT
CTGCTATTGAAAGTAGCGTATATATACATCGTTCTTTGTGACCGCGGTCA
TTCAAAAATGATTGAATTTCGAATTTGGGAATTTTCGGGTCACAATTATG
TATCAAGTCGAACAACTTGTTCTCTGTTATCTCGAAGTCAGACTCTCAGA
AGGGTTCGTAATGGATTGCAGTGATACTGTACTGTACTGTACTGTACTGT
ACTGTACTGTATTGCCATACTGTGCACTTCACAAGAAAATTCCAGTTGGA
TACGCCGTGTGTGTTTTGTTCCCAGCTTATACGAGGCTCATCTCTTTCGT
AAGTTACTAACTGACCTTCGAGAGCAAGTTATGATGATTTTTGAGCCAAT
GCATCATCGTTTTGATGTAAAGGTTATTATCCAGGGGTCAGAAGGTGCCA
TTTATGACTGATATCCATGTCGCGGACAAAGCGCCCAGCACACGATATCG
AATTTTTGACCCAGTTCAAGGTTTGTCCTGACCCTATACGAGATGATCCA
AACTTAGCCACAGCAATGAATGGTCGTAAAATTTCCTACAATCACCTGAT
TTTTTTTGTTTTTCATGCTGCGGAAAAACTTCCAAGGCAACAGCTGGACA
ATCGCCGTAGCGGTCGCCGTGACTCTCCTGTCAGATTACTGGTTAATTTC
GCCGATGTCTTGAAGTTACCAGCTTGCCGTTCACCACGTGTATCTAAACG
TGGAGACGGCAAACTTCCGCATGATGTAGCGCGCTTGCGCAGCGGGATGA
GGGGACAGGGTGTGGTAATATTGGACCAAAGATACTTCATGTCTGGATTC
TCGCGTACGAGTTATTTCCCCTTCGCTGCAGCAGCATTAAACGCAATAAC
GTTCTTCATGTGACCTTATAATTGAGTTACCGTACCCACTCAAGATACTC
CCTCCGCGCGCCCTGCGACTACGCTACCCTGTCACGTCCCCTACGGCCCG
ACCCAATATTTCTGCTCAATCACAGCTCCCCCCATCGAAGGATCCACATG
ACGAATGACCACCATGGCTCGTCGCCCCCGGGGCGCCGCCGGCAGCTTCC
GCATTCGACTACATCCTACGCCAACCAATCAGTACCGGGCAGCAACGGTG
GTGCCCAATGGAAATCCGTGAACAGTGGTGGTAGAGGAGGCGTCGACGGC
AGGAGGCGCAGTGACGGAGGAGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3377:9447..11323+

>mRNA_H-paniculata_contig3377.9024.1 ID=mRNA_H-paniculata_contig3377.9024.1|Name=mRNA_H-paniculata_contig3377.9024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig3377:9447..11323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAACAACAGGTTCACTGGTGGCGAAAACAGATGGGCAACAACAGG
TTCACTGGTGGCGAAAACAGCTCCCCCCATCGAAGGATCCACATGACGAA
TGACCACCATGGCTCGTCGCCCCCGGGGCGCCGCCGGCAGCTTCCGCATT
CGACTACATCCTACGCCAACCAATCAGTACCGGGCAGCAACGGTGGTGCC
CAATGGAAATCCGTGAACAGTGGTGGTAGAGGAGGCGTCGACGGCAGGAG
GCGCAGTGACGGAGGAGGCGGGCTCCCCCCATCGAAGGATCCACATGACG
AATGACCACCATGGCTCGTCGCCCCCGGGGCGCCGCCGGCAGCTTCCGCA
TTCGACTACATCCTACGCCAACCAATCAGTACCGGGCAGCAACGGTGGTG
CCCAATGGAAATCCGTGAACAGTGGTGGTAGAGGAGGCGTCGACGGCAGG
AGGCGCAGTGACGGAGGAGGCGGG
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