mRNA_H-paniculata_contig33760.9022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33760.9022.1
Unique NamemRNA_H-paniculata_contig33760.9022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33760.9022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33760contigH-paniculata_contig33760:1139..2387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size494
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33760.9022.1prot_H-paniculata_contig33760.9022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33760 1139..2387 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.2679386-CDS-H-paniculata_contig33760:1138..13171622930041.2679386-CDS-H-paniculata_contig33760:1138..1317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33760 1139..1317 -
1691481122.443307-CDS-H-paniculata_contig33760:1138..13171691481122.443307-CDS-H-paniculata_contig33760:1138..1317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33760 1139..1317 -
1622930041.2896132-CDS-H-paniculata_contig33760:1336..15071622930041.2896132-CDS-H-paniculata_contig33760:1336..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33760 1337..1507 -
1691481122.456648-CDS-H-paniculata_contig33760:1336..15071691481122.456648-CDS-H-paniculata_contig33760:1336..1507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33760 1337..1507 -
1622930041.3097088-CDS-H-paniculata_contig33760:2245..23871622930041.3097088-CDS-H-paniculata_contig33760:2245..2387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33760 2246..2387 -
1691481122.4666178-CDS-H-paniculata_contig33760:2245..23871691481122.4666178-CDS-H-paniculata_contig33760:2245..2387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33760 2246..2387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33760.9022.1

>prot_H-paniculata_contig33760.9022.1 ID=prot_H-paniculata_contig33760.9022.1|Name=mRNA_H-paniculata_contig33760.9022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
THESKIAVSRVTNRHEEEAGCAGTSAPSDATIVSRKTSDIGGGGRNEGAS
VRGDTCEGNSLVGGGVLSTENRTNGCKDGLICEPPIPSAVAHTLDGGGGR
GGRGVGLVTTRKQMLRRLQDYMVVTLVKFRCPLPLTLPPPPGRAASAKRR
RGEKDEVKSSEPV*
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mRNA from alignment at H-paniculata_contig33760:1139..2387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33760.9022.1 ID=mRNA_H-paniculata_contig33760.9022.1|Name=mRNA_H-paniculata_contig33760.9022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1249bp|location=Sequence derived from alignment at H-paniculata_contig33760:1139..2387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCATGAGTCCAAGATAGCCGTAAGCAGGGTCACTAACCGCCACGAAGA
GGAGGCCGGATGCGCTGGGACATCGGCTCCGTCCGACGCAACTATCGTAT
CGAGGAAGACCAGCGATATTGGCGGAGGCGGTCGCAACGAAGGTTTGTTT
GTGCGTGCCGACGGATTCCCCTTGAGCGTATTTCGTGGTCTAGCTGTGTT
CGCGGAACTAGGTTGCTTCTATAGAGTACAGGAGTAGGTGTTGTTGTCTG
TTGTTTGTCCTGTTTTTTCGCTCGAGCGAAACGGGAGATGCTCATATGCT
ACCCCTTACTGATGTAATTTTGCTGACAAATGAAGACAAGCGAAGTTTAA
GGTCAGCTACATAACCTCAACATGTGTAGGTACCATGGAGTTATTGTAGG
AGCACTAAATGTTGGTTCTACTAACTGTGGTATGTGGGATAGTTAGTTAG
GAACGAGAGTCCCAGTGGATGAAAGTTGGGGCTTGTTTTGGGGATGTGAT
TCGTTCATGTGACACTGTTTCATGTTCACATACAGTACACACGCGAGTGA
TGCGTATTACTTCCTTGTAAAGGGTATCATAGCCTATGTCGTGCCTCGTC
GAAGAGGTGCGAGGAGTCCTGGTACTGGGTCATCTCCCCCCGCCCCGTCG
TGCTTGAATGAGTTGGTGCCGTACATGTCTGAACTTACCGGCGCTGTATT
TGCTTGGATGAAAGGCACAACTCATATGCACCCCGCTTTGGACATACCTA
TCGTCTCTGTATATTTTCGCAGCCGTAAACAAAAACAACATACGCTACTA
GTGAAACTACCATGCATACATCCCGTTACGAGATACTCACGTTGTACTTC
GTGCGCTGTACTTACCGCCCTACATCACAGGAGCTAGCGTTCGTGGCGAT
ACATGTGAGGGTAATTCTCTGGTGGGTGGTGGTGTCTTGAGCACCGAGAA
CAGAACAAATGGCTGTAAGGACGGCCTAATCTGCGAGCCCCCCATACCAA
GCGCCGTTGCTCACACTTTGGACGGTGGTGGTGGTCGTGGTGGTCGTGGT
GGTCGTGGCGGTCGTGGAAGTAGGGTTGGTGACGACGAGGAAACAGATGT
TGCGACGACTGCAGGATTACATGGTGGTAACGCTGGTGAAGTTCCGATGC
CCCCTTCCACTCACCCTTCCGCCGCCGCCGGGCCGGGCAGCATCAGCCAA
GCGCCGTCGTGGGGAAAAGGACGAGGTGAAATCCAGCGAACCGGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33760:1139..2387-

>mRNA_H-paniculata_contig33760.9022.1 ID=mRNA_H-paniculata_contig33760.9022.1|Name=mRNA_H-paniculata_contig33760.9022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig33760:1139..2387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCATGAGTCCAAGATAGCCGTAAGCAGGGTCACTAACCGCCACGAAGA
GGAGGCCGGATGCGCTGGGACATCGGCTCCGTCCGACGCAACTATCGTAT
CGAGGAAGACCAGCGATATTGGCGGAGGCGGTCGCAACGAAGACCCATGA
GTCCAAGATAGCCGTAAGCAGGGTCACTAACCGCCACGAAGAGGAGGCCG
GATGCGCTGGGACATCGGCTCCGTCCGACGCAACTATCGTATCGAGGAAG
ACCAGCGATATTGGCGGAGGCGGTCGCAACGAAGGAGCTAGCGTTCGTGG
CGATACATGTGAGGGTAATTCTCTGGTGGGTGGTGGTGTCTTGAGCACCG
AGAACAGAACAAATGGCTGTAAGGACGGCCTAATCTGCGAGCCCCCCATA
CCAAGCGCCGTTGCTCACACTTTGGACGGTGGTGGTGGTCGTGGTGGTCG
TGGTGGAGCTAGCGTTCGTGGCGATACATGTGAGGGTAATTCTCTGGTGG
GTGGTGGTGTCTTGAGCACCGAGAACAGAACAAATGGCTGTAAGGACGGC
CTAATCTGCGAGCCCCCCATACCAAGCGCCGTTGCTCACACTTTGGACGG
TGGTGGTGGTCGTGGTGGTCGTGGTGTAGGGTTGGTGACGACGAGGAAAC
AGATGTTGCGACGACTGCAGGATTACATGGTGGTAACGCTGGTGAAGTTC
CGATGCCCCCTTCCACTCACCCTTCCGCCGCCGCCGGGCCGGGCAGCATC
AGCCAAGCGCCGTCGTGGGGAAAAGGACGAGGTGAAATCCAGCGAACCGG
TGTAGTAGGGTTGGTGACGACGAGGAAACAGATGTTGCGACGACTGCAGG
ATTACATGGTGGTAACGCTGGTGAAGTTCCGATGCCCCCTTCCACTCACC
CTTCCGCCGCCGCCGGGCCGGGCAGCATCAGCCAAGCGCCGTCGTGGGGA
AAAGGACGAGGTGAAATCCAGCGAACCGGTGTAG
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