mRNA_H-paniculata_contig1140.902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1140.902.1
Unique NamemRNA_H-paniculata_contig1140.902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1140.902.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 6.050e-63
Identity = 196/455 (43.08%), Postives = 231/455 (50.77%), Query Frame = 1 
Query:  139 QALQEACTMMERVSSALAEAVDDSGVNS-PGHRGESILDDPRWASTAQPSNRGRIAVKRDRTVVDRRRR-------RALSADS----LGEAGMTGFKLGNGVDWGASQED--GLLSRGKVRVSAEHLRFSATRLLAVRREECSAADKHLARLREDLRNSEAREAETAARLEESRELSREQTGFVEGVWQERRRLEAELGARREEVERLRASEDGARTAATVLEGRVEDLSSALRKGVSRAKRDASWGAEAEVAAAGEEARVAMEAIRHQLDDLRREVDKTKRDQTRSDQPARNGQSERTXXXXXXXXXXXTRAQRSTGGAHSAVQGATGDPGEGMVGPLQDRLRNGGDETEGQAQIVADARMTSVVLEGEFQRLRAKYEKAKGRIAALEEQVAATRRAGAHARREFQGALEALKLSQELLLRIQRDRELDAGCSPDGQLPSCGNSPRTTPAIVPA 1461
            +AL+E+C +MER++SAL+ A  D   +  PG  G S LDDPRWA   +                            RA S DS    +G+A +     G+  + G    D   ++SR +VR  AE LRF A RLL VR+EE  AA   +A LR DLR+SE+REAE  ARLEESRELSREQTGFVEGVW+ER RL           ERLRASED ARTAATVL+G+V DLS+ALR+  +RAKR+A    EA VAA   EAR AMEA+R QLDDLR+E                                                                                            GEFQRLRAKYEKAKGRI ALEE VAA+RR  A ARREF+GALEALKLSQELLLRI R R+ +A   P         +P T PA  PA
Sbjct: 1129 EALRESCGVMERIASALSAAAADRRTSRRPGSDGGSELDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDSNRSGVGDADLRQDGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREA----EAAVAA---EARDAMEALRQQLDDLRKE--------------------------------------------------------------------------------------------GEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNNAVADPTDTA-----TPTTHPAAAPA 1479
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1140.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEF4_ECTSI6.050e-6343.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1140contigH-paniculata_contig1140:15702..17855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1496
Cds size1494
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1140.902.1prot_H-paniculata_contig1140.902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1140 15702..17855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928848.2862515-CDS-H-paniculata_contig1140:15701..158781622928848.2862515-CDS-H-paniculata_contig1140:15701..15878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1140 15702..15878 -
1691480643.28791-CDS-H-paniculata_contig1140:15701..158781691480643.28791-CDS-H-paniculata_contig1140:15701..15878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1140 15702..15878 -
1622928848.3064022-CDS-H-paniculata_contig1140:16123..168191622928848.3064022-CDS-H-paniculata_contig1140:16123..16819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1140 16124..16819 -
1691480643.2960813-CDS-H-paniculata_contig1140:16123..168191691480643.2960813-CDS-H-paniculata_contig1140:16123..16819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1140 16124..16819 -
1622928848.3255746-CDS-H-paniculata_contig1140:17234..178551622928848.3255746-CDS-H-paniculata_contig1140:17234..17855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1140 17235..17855 -
1691480643.3042893-CDS-H-paniculata_contig1140:17234..178551691480643.3042893-CDS-H-paniculata_contig1140:17234..17855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1140 17235..17855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1140.902.1

>prot_H-paniculata_contig1140.902.1 ID=prot_H-paniculata_contig1140.902.1|Name=mRNA_H-paniculata_contig1140.902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=498bp
AIEGSALSGPVGVTRRAGRIEQRSVCSTPLDIDKECGAEARSPWESQALQ
EACTMMERVSSALAEAVDDSGVNSPGHRGESILDDPRWASTAQPSNRGRI
AVKRDRTVVDRRRRRALSADSLGEAGMTGFKLGNGVDWGASQEDGLLSRG
KVRVSAEHLRFSATRLLAVRREECSAADKHLARLREDLRNSEAREAETAA
RLEESRELSREQTGFVEGVWQERRRLEAELGARREEVERLRASEDGARTA
ATVLEGRVEDLSSALRKGVSRAKRDASWGAEAEVAAAGEEARVAMEAIRH
QLDDLRREVDKTKRDQTRSDQPARNGQSERTDRSSQNDQSRRTRAQRSTG
GAHSAVQGATGDPGEGMVGPLQDRLRNGGDETEGQAQIVADARMTSVVLE
GEFQRLRAKYEKAKGRIAALEEQVAATRRAGAHARREFQGALEALKLSQE
LLLRIQRDRELDAGCSPDGQLPSCGNSPRTTPAIVPANAFPAAVAAAE
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mRNA from alignment at H-paniculata_contig1140:15702..17855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1140.902.1 ID=mRNA_H-paniculata_contig1140.902.1|Name=mRNA_H-paniculata_contig1140.902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2154bp|location=Sequence derived from alignment at H-paniculata_contig1140:15702..17855- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATTGAGGGGTCGGCATTGTCGGGCCCCGTTGGAGTTACTCGACGTGC
GGGACGGATTGAGCAGAGGTCGGTTTGTAGCACACCTCTTGACATTGATA
AAGAGTGTGGAGCAGAGGCAAGGAGTCCCTGGGAAAGCCAAGCGCTTCAG
GAAGCTTGCACCATGATGGAAAGAGTGTCCTCGGCATTGGCGGAGGCTGT
CGATGACTCCGGAGTCAACTCGCCCGGTCACAGAGGCGAAAGCATTCTTG
ATGATCCGCGGTGGGCTTCGACAGCGCAGCCGAGCAACCGGGGGAGGATA
GCAGTCAAAAGGGACCGTACCGTGGTAGACCGCAGACGAAGACGAGCGCT
CTCGGCTGATAGTTTGGGCGAGGCAGGCATGACCGGTTTCAAGTTAGGGA
ACGGTGTCGACTGGGGAGCGTCGCAGGAGGATGGATTGCTGTCGAGGGGC
AAGGTACGCGTATCCGCAGAGCATTTACGCTTCTCCGCGACCCGATTGTT
GGCCGTGCGGCGGGAGGAGTGTTCGGCAGCAGACAAGCATTTGGCGCGTC
TCCGTGAGGACCTGCGGAACTCTGAAGCGAGAGAAGCGGAAACGGCGGCT
AGGCTAGAGGAGAGCCGCGAGGTGAGAATGTTTGTCCGTCTTGGCTAACC
TACTGATATGCTCATTGTAAATGGCATAGGCATTTGTTCCCTAGACAGAG
CTCAAGTAACAATGCAATGGATGGATTGTTATTAAATTGCATGATAATAT
CCACGCCGTCCCCCGCAGTCGTGATGCTTTTCGGATACGAATGTGTAGCC
CATCAATCAGTTGCAGCCCAAAAATATGTGGTAGGAAATATGCAGTGTAC
CCATCGACGACTGTCGGAGGTTTCATTGCCGTTGTTGCCGTTGTTGGACA
CGCCGCTCCATATCTCACGCAAGCTCGGTGTGTTGTGCTTCTGTAAATAC
GAGCCCAACTTCCCTATTTTTACTCCAGTAGTTTGCCCTTTGTATCTGTT
CCGCATCTATCATGCCGCGCTTTCCCCGCGAAACAGCTAAGCCGTGAGCA
GACGGGATTTGTCGAAGGCGTATGGCAAGAGCGGCGGCGCCTTGAGGCCG
AGCTGGGCGCTCGCAGGGAAGAGGTCGAGCGGCTGAGGGCGAGCGAGGAC
GGGGCGCGAACGGCTGCCACGGTTCTGGAAGGTCGAGTGGAAGACCTCTC
GTCCGCGCTTCGCAAGGGGGTCAGCAGAGCGAAGCGGGACGCTTCGTGGG
GTGCGGAAGCAGAGGTGGCGGCAGCGGGGGAGGAGGCTAGGGTAGCGATG
GAAGCGATACGGCACCAGCTCGACGACCTTCGTCGAGAGGTGGATAAGAC
TAAGAGAGACCAGACACGTAGCGACCAGCCTGCACGGAACGGCCAATCTG
AACGGACCGACCGCTCGTCTCAGAATGACCAGTCGCGACGAACGAGAGCA
CAGCGGAGCACGGGAGGGGCTCATTCCGCCGTTCAGGGTGCGACAGGAGA
TCCTGGCGAGGGTATGGTGGGTCCATTGCAGGACAGGTTGAGAAATGGTG
GAGATGAGACTGAAGGGCAAGCTCAGATCGTTGCGGATGCTAGGATGACC
TCTGTTGTGCTGGAAGGCGAGTTCCAGCGATTGCGAGCGAAGTACGAGAA
GGCGAAAGGGCGTATCGCAGCGCTGGAGGAGCAAGTGGCAGCTACTCGTC
GTGCTGGGGCGCACGCTCGAAGAGAGTTTCAGGTGGGGGTTCTGTTTCCG
CCATTTACCCTGGATGTGAGGTAGATGATTTTGATCCGTGACCTGTATAT
ACAGCCATCTCTTGCATTCGCTGGCCTCTAATATTGGGCGCTACCGATTT
CATCCGGCGTTTTTTTTAAATGTCAATACGGATACCGGGCGTAGCCCTCC
TGTTCCCCAGTAGACAGTGGTGGATAAAACCATCTTGACACCTCGATACC
CCCACTCCCCTCCTCGGTCTTTTTCAGGGTGCTCTGGAGGCATTGAAATT
GTCTCAGGAGCTGCTGCTCAGAATTCAGCGAGACCGTGAATTAGACGCCG
GCTGCAGTCCTGACGGCCAGTTGCCATCCTGCGGAAATAGTCCTAGGACT
ACACCAGCAATTGTACCGGCGAACGCGTTCCCCGCGGCGGTGGCCGCAGC
GGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1140:15702..17855-

>mRNA_H-paniculata_contig1140.902.1 ID=mRNA_H-paniculata_contig1140.902.1|Name=mRNA_H-paniculata_contig1140.902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at H-paniculata_contig1140:15702..17855- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATTGAGGGGTCGGCATTGTCGGGCCCCGTTGGAGTTACTCGACGTGC
GGGACGGATTGAGCAGAGGTCGGTTTGTAGCACACCTCTTGACATTGATA
AAGAGTGTGGAGCAGAGGCAAGGAGTCCCTGGGAAAGCCAAGCGCTTCAG
GAAGCTTGCACCATGATGGAAAGAGTGTCCTCGGCATTGGCGGAGGCTGT
CGATGACTCCGGAGTCAACTCGCCCGGTCACAGAGGCGAAAGCATTCTTG
ATGATCCGCGGTGGGCTTCGACAGCGCAGCCGAGCAACCGGGGGAGGATA
GCAGTCAAAAGGGACCGTACCGTGGTAGACCGCAGACGAAGACGAGCGCT
CTCGGCTGATAGTTTGGGCGAGGCAGGCATGACCGGTTTCAAGTTAGGGA
ACGGTGTCGACTGGGGAGCGTCGCAGGAGGATGGATTGCTGTCGAGGGGC
AAGGTACGCGTATCCGCAGAGCATTTACGCTTCTCCGCGACCCGATTGTT
GGCCGTGCGGCGGGAGGAGTGTTCGGCAGCAGACAAGCATTTGGCGCGTC
TCCGTGAGGACCTGCGGAACTCTGAAGCGAGAGAAGCGGAAACGGCGGCT
AGGCTAGAGGAGAGCCGCGAGGCCATTGAGGGGTCGGCATTGTCGGGCCC
CGTTGGAGTTACTCGACGTGCGGGACGGATTGAGCAGAGGTCGGTTTGTA
GCACACCTCTTGACATTGATAAAGAGTGTGGAGCAGAGGCAAGGAGTCCC
TGGGAAAGCCAAGCGCTTCAGGAAGCTTGCACCATGATGGAAAGAGTGTC
CTCGGCATTGGCGGAGGCTGTCGATGACTCCGGAGTCAACTCGCCCGGTC
ACAGAGGCGAAAGCATTCTTGATGATCCGCGGTGGGCTTCGACAGCGCAG
CCGAGCAACCGGGGGAGGATAGCAGTCAAAAGGGACCGTACCGTGGTAGA
CCGCAGACGAAGACGAGCGCTCTCGGCTGATAGTTTGGGCGAGGCAGGCA
TGACCGGTTTCAAGTTAGGGAACGGTGTCGACTGGGGAGCGTCGCAGGAG
GATGGATTGCTGTCGAGGGGCAAGGTACGCGTATCCGCAGAGCATTTACG
CTTCTCCGCGACCCGATTGTTGGCCGTGCGGCGGGAGGAGTGTTCGGCAG
CAGACAAGCATTTGGCGCGTCTCCGTGAGGACCTGCGGAACTCTGAAGCG
AGAGAAGCGGAAACGGCGGCTAGGCTAGAGGAGAGCCGCGAGCTAAGCCG
TGAGCAGACGGGATTTGTCGAAGGCGTATGGCAAGAGCGGCGGCGCCTTG
AGGCCGAGCTGGGCGCTCGCAGGGAAGAGGTCGAGCGGCTGAGGGCGAGC
GAGGACGGGGCGCGAACGGCTGCCACGGTTCTGGAAGGTCGAGTGGAAGA
CCTCTCGTCCGCGCTTCGCAAGGGGGTCAGCAGAGCGAAGCGGGACGCTT
CGTGGGGTGCGGAAGCAGAGGTGGCGGCAGCGGGGGAGGAGGCTAGGGTA
GCGATGGAAGCGATACGGCACCAGCTCGACGACCTTCGTCGAGAGGTGGA
TAAGACTAAGAGAGACCAGACACGTAGCGACCAGCCTGCACGGAACGGCC
AATCTGAACGGACCGACCGCTCGTCTCAGAATGACCAGTCGCGACGAACG
AGAGCACAGCGGAGCACGGGAGGGGCTCATTCCGCCGTTCAGGGTGCGAC
AGGAGATCCTGGCGAGGGTATGGTGGGTCCATTGCAGGACAGGTTGAGAA
ATGGTGGAGATGAGACTGAAGGGCAAGCTCAGATCGTTGCGGATGCTAGG
ATGACCTCTGTTGTGCTGGAAGGCGAGTTCCAGCGATTGCGAGCGAAGTA
CGAGAAGGCGAAAGGGCGTATCGCAGCGCTGGAGGAGCAAGTGGCAGCTA
CTCGTCGTGCTGGGGCGCACGCTCGAAGAGAGTTTCAGCTAAGCCGTGAG
CAGACGGGATTTGTCGAAGGCGTATGGCAAGAGCGGCGGCGCCTTGAGGC
CGAGCTGGGCGCTCGCAGGGAAGAGGTCGAGCGGCTGAGGGCGAGCGAGG
ACGGGGCGCGAACGGCTGCCACGGTTCTGGAAGGTCGAGTGGAAGACCTC
TCGTCCGCGCTTCGCAAGGGGGTCAGCAGAGCGAAGCGGGACGCTTCGTG
GGGTGCGGAAGCAGAGGTGGCGGCAGCGGGGGAGGAGGCTAGGGTAGCGA
TGGAAGCGATACGGCACCAGCTCGACGACCTTCGTCGAGAGGTGGATAAG
ACTAAGAGAGACCAGACACGTAGCGACCAGCCTGCACGGAACGGCCAATC
TGAACGGACCGACCGCTCGTCTCAGAATGACCAGTCGCGACGAACGAGAG
CACAGCGGAGCACGGGAGGGGCTCATTCCGCCGTTCAGGGTGCGACAGGA
GATCCTGGCGAGGGTATGGTGGGTCCATTGCAGGACAGGTTGAGAAATGG
TGGAGATGAGACTGAAGGGCAAGCTCAGATCGTTGCGGATGCTAGGATGA
CCTCTGTTGTGCTGGAAGGCGAGTTCCAGCGATTGCGAGCGAAGTACGAG
AAGGCGAAAGGGCGTATCGCAGCGCTGGAGGAGCAAGTGGCAGCTACTCG
TCGTGCTGGGGCGCACGCTCGAAGAGAGTTTCAGGGTGCTCTGGAGGCAT
TGAAATTGTCTCAGGAGCTGCTGCTCAGAATTCAGCGAGACCGTGAATTA
GACGCCGGCTGCAGTCCTGACGGCCAGTTGCCATCCTGCGGAAATAGTCC
TAGGACTACACCAGCAATTGTACCGGCGAACGCGTTCCCCGCGGCGGTGG
CCGCAGCGGAGGGTGCTCTGGAGGCATTGAAATTGTCTCAGGAGCTGCTG
CTCAGAATTCAGCGAGACCGTGAATTAGACGCCGGCTGCAGTCCTGACGG
CCAGTTGCCATCCTGCGGAAATAGTCCTAGGACTACACCAGCAATTGTAC
CGGCGAACGCGTTCCCCGCGGCGGTGGCCGCAGCGGAG
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