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Homology
BLAST of mRNA_H-paniculata_contig3376.9021.1 vs. uniprot
Match: D8LBA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBA1_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 4.580e-14 Identity = 59/108 (54.63%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 1 RLEGIKERRAAARKANVDAMKQHKQKEAMKAEADRLQWERNNRMLMEXXXXXXXXXXXXXXXXXXXXXRRTKAAMYLGRAAAAVEEGNFRQLLRGAEREAERRQRVAR 324
RLE I+ RRAAA++AN +A ++ K R+Q ERN+ LME XXXRRTKAA+YLGRAAAAVEE NF+Q+L GAEREAERRQRVAR
Sbjct: 556 RLESIQARRAAAKQANREAARERKXXXXXXXXXXRIQRERNSIALMEELERKRLAREAEMAVLAEXXXRRTKAALYLGRAAAAVEEKNFQQMLGGAEREAERRQRVAR 663
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.9 |
| Seed ortholog evalue | 2.5e-11 |
| Seed eggNOG ortholog | 2880.D8LBA1 |
| Preferred name | CFAP99 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2CN4V@1,2QTX0@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 1167 |
| Cds size | 627 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3376.9021.1 >prot_H-paniculata_contig3376.9021.1 ID=prot_H-paniculata_contig3376.9021.1|Name=mRNA_H-paniculata_contig3376.9021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
MKQHKQKEAMKAEADRLQWERNNRMLMEELENKKLAREAEHLQLADEEER
RTKAAMYLGRAAAAVEEGNFRQLLRGAEREAERRQRVARDAAERYQNVTN
EDRRQIEENTRKKESRKKRLYDQKQTEFALARTRLLEEQREEMHQRQESF
KRAREKAKEVRRKIVNHNPYANTVNHESVERGRRHIVVKAAAAAATTATT
AVTNALCS* back to topmRNA from alignment at H-paniculata_contig3376:10116..14805- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3376.9021.1 ID=mRNA_H-paniculata_contig3376.9021.1|Name=mRNA_H-paniculata_contig3376.9021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4690bp|location=Sequence derived from alignment at H-paniculata_contig3376:10116..14805- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTGGAGGGTATTAAGGAGAGGAGAGCAGCGGCACGGAAGGCCAACGT
CGACGCGATGAAGCAGCACAAGCAGAAGGAGGCGATGAAGGCAGAAGCAG
ATCGACTACAGTGGGAGCGCAACAATCGCATGGTATTTATTAGAGCAAAA
CCAATAATGCAAACGACTACGTACTCTAGGTTCATGAATCACACCGTGGA
GCTACTCACTGTCCTCGTGGCCGTGTTTTTCTTGGACATCAACTCGACTG
CGTTGTGTTACCAAGCTCCCCCCCTGCGACAACACATCCTAGGCCGACTA
AAAAAGCACAAGCTGCACGGGAACGTGTCAAGCCCTACTGTTAGATATAT
TATTATAAATCTCTCTTGATTCTCTGTGTGCCAACGAAAGGAAACATGTT
CCGAATAGTTCACAACACTTTCGCAGAGAGTGAAACCGCGGGGAAGATAA
AAATAGTGTTTAGTTGAGTACAGCCGTTCATCCCTCGATACTGCGCCTGC
AGGCCGCCGCCCTTACCCTCCCCGGGGGCCACTCCCGCGTATCGTCACCG
TTACCCGGCAGCTCATGGAAGAGCTGGAAAACAAGAAGCTGGCGCGAGAG
GCGGAGCACTTGCAACTCGCGGACGAGGTAATTAACACGATAACTAAAGT
AAAACATATTCCGCCGTTTAAACTCGTCCAACGTCTCGTCCATACCCAAA
CCCCTCTTCTCTTAATTCCAAGCTTCCCTGCATCTCCTTCGGCTATATAC
CTGTTCGTCTCTTCGACGATTTTTTGGCAGCAAAACAAACATTATTTTGA
CTATTGAGCAGTAGTGTGTTTTCGCTTGGTCTTCAAGAAAGCATGAAGTA
CTGATGGATGGGAGAAACGCCATGTAATGGCTGTGGAAAACAGGAGGAGC
GTCGAACGAAAGCGGCCATGTACCTGGGCCGGGCGGCAGCTGCTGTGGAA
GAGGGAAATTTCCGACAGTTGCTCAGAGGGGCAGAGAGGGAGGCAGAGAG
GAGACAAAGGGTCGCCAGGTGAGTCAGCCCTGCTATAGCTTAGTTCAAGA
GAGCGGAAATGGAGATTTAATTCCGACCCCGTAGTTGCTGTCCTCAGCTT
GTACGCATTGGCGCTTGGACAATAGCCCGCTCTATGCGCTTCGTTCAACG
TATCCGCGATGAGAAGCGTGTACAGTCCGGTACCTTGCACTACACTCCCA
ATCCTGTGTCCGTTCTTGACGTTGAGACGGGGTTGGCAACGTCCAAACAG
GTTGTGTGGATTTTGGCCAAGCCGTTAACAACCTCAAAAGCCTCGCGTGT
ACAAAGTCTGATGATCACCTTACCACAACGCGGGGCGTTTTATTTGGTGC
CTCAATGCCCCCCCAAGGTACCCTCTGGCCACCTGTGCCGTCAAATACGC
GGAAGGCGTACTCATATATGTACACTCAGTTGTGTGTTTACTGGAACATG
GTTGCAGTTGGGTCCTACTGTATGGCGGAATTTGCTTTGATTGGTCACTC
ACCCCGGCCTATTCATCAAAGTCTCGTCAACTACCGTGCTGGTTTTCTCA
ACCGAAGTGCTTATTTTGCAGAGATGCGGCGGAGAGATATCAAAACGTGA
CGAATGAGGATAGAAGACAGATTGAAGAAAACACAAGGAAGAAGGAGGTA
TGTGTCTATGTACGTACTCGGGGTATGTATGTCGAGCTCTATGTATCTAT
GTGTCATCTTGTCAAGGGCACCTTCGTCTATTGGTAATATAAGTCGGTGC
TATAATGTCTGCTCCGAAACGGATAAGTGCACGCAACATTCTTTATACCC
GACCACCGCAAATTATTGGTACAACAAAACAGTGAAAAAAAAGTCCTCTC
CGAGCTGGTCATCGTCGGCAATCTATTTAATCTCCTCTGTCCGTTCGGCT
ACCTTGCCAAGGTTGTAGCCGTTTTTGACGTTTCGAAGGGGTTGACAACG
TTGTGATATCTTGTGTGGAGATTTGCCAAGCCGTTAGCCTTTCCATAGTC
CTTGTCACAAACGTTTTTAGTTTGTGACGACAACGTGGGACGTTGTGCGT
TTCGCCCCGATGTCCTGGAAGATATCCCTCTGGGCACGCGTAAAGTTCTT
GAGATAGATTTACTTACTCCGCGCTATCCGGCCTTGCCCTCTTTCTCTCC
CCTTCTGTTTGTCGTTGTCCTCTCGAATAGTCGCGAAAGAAACGTTTGTA
CGACCAGAAGCAGACAGAGTTTGCGTTGGCTAGGACCCGTCTTTTGGAGG
AGCAGCGTGAAGAGATGCACCAGAGGCAGGAGAGTTTCAAGAGAGCGAGA
GAAAAGGTAGATGACTCTTCGTTTCATGCCGATTGGAGCGCGGGTTTGAG
CATGCAGCAGGGTACTCCCTTTTTGGTTTGAAGGTTGATGGAGTGATGTG
GCCAGTCATAGCTATTTTTGACTTTTCCAAAGATAGCTTGATAGGTCGCC
AGCGTTTAGGCTATAATAGTAATACCATACAATCAGGGTCTCTGCCTCGC
GCCCCTGGACATGTACAGTGATGGAAGACGACAAGCGTAAATCCCGTGGT
CTATATTGTGTCGAATATACAACAATATTGTAATCTTCATCACTAGAAGT
TTTTGTGCATCTCCACCACCATAAATGAGTCGAGAGTTGATGCGTGCGAG
AGCTACTCGTAGGTGAATACGTGAACAACGGTTGCTTCGAGGTCGCCTAC
AGTATGGCGACGCCTGCAAAATGCGAAGATTTCAAGTGACGGTGGCGCGT
TGGCGCGGGAGGGTAGTTTAGGGACATGATATTGTATCGTTCCCTCTCTG
CCATACATAATGACCTGAGCACTTCCGAAGTATACTGAACCCTAGGCCTT
AATGTCTTCGCTGTTCAAACTCTGCAGGCACGTTAACGAGCACAAATCTT
GTTGCGATGGTCTTCGTAGACCCGCCCTAAAACCTGGTGGTACGAACAAC
GTATTTTTCAGAAAATTCCCCCCCTCAAACTCAGTGTAGTGTATGACCGT
TCTACTGTACTATATTACAATAGATGTACGCGTAACCTACTAAGCGCCAC
CAAGTCTATTGGAGGTCTACAGCAGCAGCAGCAGTAGGACAGAAATCGTC
CACCAAGGAGTGAAAAACAAACACAGCCGCCATTTTTTTCGCTGATCCAG
GGCCGAGCATGAAAACGCCTCCGATACATTCTCACAAATATCATTACTAT
TTTTAAATCGGCTTGTCATGTTGTCAAGGTTTCACAACGCGATCACCACG
TTCGACCTTCGACCTTCGACCTTCCAACTTGGCGTAGTGCGCTTCTCATT
TCGTGTATCACACTCACCTATAGCTCTACATGAACGGATGCGGACATGTT
GATCCCAAGTGGAAGCGACTCTTGTGGTCAGGAAGTCAATCAACAAAATA
ATAGCAGCTTTTGTCTTTTTGTACTGCCATGTGTCAAACGCACACACATC
ATTTGTCAATAGCGCTAGGCAGGACGCCACGCCATGTCACGTGCATACAT
ACACACATACGTGACCTGCATTCTTAACTAGTCCGTTGAGCCATAGGTAA
AATGTTAGCTAGTTGACCAACATTCCAAGGAGCTTCTGTCCTAATAAGAG
TATCCCTACTTAGACGCCCTGGGGGCCTAAAGGTCCACACCGACGTCCTC
CCCACAATATATTTTTTGCACGGATGTCTCCGGTTAGATCAATCACGGAT
CCCTCACAAATTTAGGGGCCGGGCGCCCCCCCCCGCCCCCCCCCCTCGAT
CACGTATCGCTTCCTCCCGGTTTCTAGCCTAGAACCTTGTTCTCGCGCCA
GATTGGCGAGTACGTAGTACGTGAGTACTAAGTTACTGCCTTCGAGGAGT
TGATGAAGGAGATACATACATATCAGGTACATTTTTACTCCGTCGAACGA
ATCGAAGCAAATACGATGTACTTGTGATTTTTTTCGTGTCTTATCTACAT
GAGCGAAGGAGGTCCGCTGTATAGAGCTACATCCGCTTTCACACCGTCCG
CTGAATCGAAATAAATGCGATGTGCTTGTGTTTGATGCCCATCTATAGGC
GAAGGAGGTTCGGCGAAAGATAGTGAATCACAACCCTTACGCAAATACAG
TCAACCACGAGAGCGTGGAGCGAGGGAGGCGGCACATCGTGGTAAAGGCT
GCAGCAGCGGCGGCGACAACGGCGACAACGGCAGTAACAAATGCTCTGTG
CTCCTAGGCGAAAAGAAGACCCTTCCATGTACTCGAACTAAGAGCAACAA
AACAGCGCCTGGTGAATGTTTCGTAGTTACATGCAGGGACCCCTCCAGTA
TTCTTTGAGCTATGTGTTGTAGCGCACTCGGGAACGAACGCACGGACGCG
ACGAAGGGAAAAATTAGTAGGTCTTTTGGCCAACCCGCTTCAAGAGATGG
AAAACTCTTTGGACACGACCTTAAAATGCGGGTCAACTTCCACATGAATC
TGACATTGATTGTAATTGTCACAAAATCAGGATATTGTAGAGCTTCTTCT
CGCGTTTCGTGCTTGACACATCTTTGGAACTTGAGTCTGTTTCATAAGAG
AACAGAAAAGCAGACGACAAAGATAGAACCCGAATCCAGGACCGAGAGGC
AGATAGGTCTGTCGAGATGTGGATAGCCAATACTCAACAGCCGATTGTCG
TACTCGAGAATCAGTTTGTAACTGAGAATCAGCGTCGGCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3376:10116..14805- >mRNA_H-paniculata_contig3376.9021.1 ID=mRNA_H-paniculata_contig3376.9021.1|Name=mRNA_H-paniculata_contig3376.9021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig3376:10116..14805- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCAGCACAAGCAGAAGGAGGCGATGAAGGCAGAAGCAGATCGACT
ACAGTGGGAGCGCAACAATCGCATGATGAAGCAGCACAAGCAGAAGGAGG
CGATGAAGGCAGAAGCAGATCGACTACAGTGGGAGCGCAACAATCGCATG
CTCATGGAAGAGCTGGAAAACAAGAAGCTGGCGCGAGAGGCGGAGCACTT
GCAACTCGCGGACGAGCTCATGGAAGAGCTGGAAAACAAGAAGCTGGCGC
GAGAGGCGGAGCACTTGCAACTCGCGGACGAGGAGGAGCGTCGAACGAAA
GCGGCCATGTACCTGGGCCGGGCGGCAGCTGCTGTGGAAGAGGGAAATTT
CCGACAGTTGCTCAGAGGGGCAGAGAGGGAGGCAGAGAGGAGACAAAGGG
TCGCCAGGAGGAGCGTCGAACGAAAGCGGCCATGTACCTGGGCCGGGCGG
CAGCTGCTGTGGAAGAGGGAAATTTCCGACAGTTGCTCAGAGGGGCAGAG
AGGGAGGCAGAGAGGAGACAAAGGGTCGCCAGAGATGCGGCGGAGAGATA
TCAAAACGTGACGAATGAGGATAGAAGACAGATTGAAGAAAACACAAGGA
AGAAGGAGAGATGCGGCGGAGAGATATCAAAACGTGACGAATGAGGATAG
AAGACAGATTGAAGAAAACACAAGGAAGAAGGAGTCGCGAAAGAAACGTT
TGTACGACCAGAAGCAGACAGAGTTTGCGTTGGCTAGGACCCGTCTTTTG
GAGGAGCAGCGTGAAGAGATGCACCAGAGGCAGGAGAGTTTCAAGAGAGC
GAGAGAAAAGTCGCGAAAGAAACGTTTGTACGACCAGAAGCAGACAGAGT
TTGCGTTGGCTAGGACCCGTCTTTTGGAGGAGCAGCGTGAAGAGATGCAC
CAGAGGCAGGAGAGTTTCAAGAGAGCGAGAGAAAAGGCGAAGGAGGTTCG
GCGAAAGATAGTGAATCACAACCCTTACGCAAATACAGTCAACCACGAGA
GCGTGGAGCGAGGGAGGCGGCACATCGTGGTAAAGGCTGCAGCAGCGGCG
GCGACAACGGCGACAACGGCAGTAACAAATGCTCTGTGCTCCTAGGCGAA
GGAGGTTCGGCGAAAGATAGTGAATCACAACCCTTACGCAAATACAGTCA
ACCACGAGAGCGTGGAGCGAGGGAGGCGGCACATCGTGGTAAAGGCTGCA
GCAGCGGCGGCGACAACGGCGACAACGGCAGTAACAAATGCTCTGTGCTC
CTAG back to top
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