prot_H-paniculata_contig3375.9019.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig3375.9019.1
Unique Name	prot_H-paniculata_contig3375.9019.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	216

Homology

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: D7FQJ9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ9_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 7.540e-101
Identity = 157/213 (73.71%), Postives = 179/213 (84.04%), Query Frame = 0

Query:    1 MKTAFAASALAMVASTEAFVPPTAVRGALCRSNSLETSRVASSVKAAPSMEFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            MKTAFAA  LAM  +T AFV P AV+ AL  S     +R +SS+    SMEFAGGL GA GPEPNSKNFDP GF+ A+PEN+LF+REAEIKHGR+AML ICGLI PEFVRVPG+IYQDVSVLDAHN MVEKGPMWQLLFWIS+AEI+L PTVI+M +KDREPGDF LDPLN+CK PEK E+Y+LAELK+GRLAMMA SGA+TQMA+ GHG+PF
Sbjct:    1 MKTAFAA--LAMCGTTSAFVTPNAVK-ALAPS-----TRASSSL----SMEFAGGLRGADGPEPNSKNFDPFGFSEARPENLLFFREAEIKHGRIAMLAICGLIAPEFVRVPGEIYQDVSVLDAHNVMVEKGPMWQLLFWISLAEIILFPTVIDMDKKDREPGDFALDPLNLCKTPEKTEKYKLAELKHGRLAMMAVSGALTQMAMFGHGYPF 201

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A835ZCB2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB2_9STRA)

HSP 1 Score: 257 bits (657), Expect = 3.300e-84
Identity = 122/176 (69.32%), Postives = 145/176 (82.39%), Query Frame = 0

Query:   38 SRVASSVKAAPSMEFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            +R A    +A SMEFAGGL+GA GPEP +KNFDPLG A   P+ VLFYREAE+KHGR+AML + G++VP FVR+PGDIYQ VSV++AHNAMVEKGPM QLLFW+S+ EI+ +P   NM  KDREPGDF LDPL  CK+PEKK+RYQL+ELKNGRLAM+AFSG +TQ  LTGHGFP+
Sbjct:   30 ARTAVRSSSALSMEFAGGLLGADGPEPTTKNFDPLGLAEKNPDAVLFYREAELKHGRIAMLAVLGMVVPNFVRLPGDIYQGVSVVEAHNAMVEKGPMVQLLFWLSLFEIITAPLTWNMQAKDREPGDFSLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHGFPY 205

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A835Z019_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z019_9STRA)

HSP 1 Score: 252 bits (643), Expect = 4.010e-82
Identity = 130/210 (61.90%), Postives = 162/210 (77.14%), Query Frame = 0

Query:    4 AFAASALAMVASTEAFVPPTAVRGALCRSNSLETSRVASSVKAAPSMEFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            A AA +LA+ A   AFV P++  G+       + +RV +S K+A SMEFAGGLIGA GPEP +KNFDPLG A  +  +VLFYREAE+KH R+AML + G++VP FVR+PGDI+Q V+V+DAHN MVEKGPM  +LFW+S+ E+L +P   NM EKDREPGDF LDPL  CK+PEKK+RYQL+ELKNGRLAM+AFSG +TQ  LTGH FP+
Sbjct:    3 AVAACSLALAAGASAFVAPSSFAGS-------QLARV-TSAKSALSMEFAGGLIGADGPEPTTKNFDPLGLA--EKGDVLFYREAELKHCRLAMLAVVGMVVPNFVRLPGDIFQGVNVVDAHNLMVEKGPMVMVLFWVSLFELLTAPLTWNMAEKDREPGDFMLDPLGFCKDPEKKKRYQLSELKNGRLAMLAFSGMITQAVLTGHDFPY 202

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A7R9U7U0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U0_9STRA)

HSP 1 Score: 231 bits (589), Expect = 5.080e-74
Identity = 115/190 (60.53%), Postives = 143/190 (75.26%), Query Frame = 0

Query:   24 AVRGALCRSNSLETSRVASSVKAAPSMEFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            A+   +  +++ +  RVA S  +A  M+FAGGLIG  GPEP SKNFDPLG A   PE + ++REAEIKHGR+ ML   G+IVPEF R+PGDI+Q V+V+DAHN MV KGPM+ LLFWIS+ EI+  PT+  + E  REPGDF  DPL++ KNP+K +RY LAELKNGRLAM+AFSG +TQ ALT HGFPF
Sbjct:    7 ALAALVASASAFQAGRVARSRTSALRMDFAGGLIGGDGPEPFSKNFDPLGLAEKSPELIPYFREAEIKHGRICMLATLGMIVPEFARLPGDIFQKVNVVDAHNEMVSKGPMYMLLFWISLWEIISLPTIKQLDE-GREPGDFAFDPLSLGKNPDKMKRYALAELKNGRLAMLAFSGMITQAALTNHGFPF 195

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A7S1XSJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSJ2_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.280e-65
Identity = 114/208 (54.81%), Postives = 141/208 (67.79%), Query Frame = 0

Query:    6 AASALAMVASTEAFVPPTAVRGALCRSNSLETSRVASSVKAAPSMEFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            AA ALA+VAS  AF  P   RG L + N+                EFAGGL+G  GPEPNS+ FDPLG A   P  + ++REAEIKHGR+ ML   G+IVPEF+R+PGDI+Q V  + AH+AMV KGPM+ LL WI V E++  PT+  + E  R PGDF  DPL++ KNPEK +RY LAELKNGRLAM+ FSG +TQ ALT +GFP+
Sbjct:   76 AAMALALVASAAAFQAPQRARG-LKQLNA----------------EFAGGLLGGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPY 265

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A7S1U797_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U797_9STRA)

HSP 1 Score: 194 bits (494), Expect = 9.550e-60
Identity = 93/156 (59.62%), Postives = 116/156 (74.36%), Query Frame = 0

Query:   58 GAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            G  GPEPNS+ FDPLG A   P  + ++REAEIKHGR+ ML   G+IVPEF+R+PGDI+Q V  + AH+AMV KGPM+ LL WI V E++  PT+  + E  R PGDF  DPL++ KNPEK +RY LAELKNGRLAM+ FSG +TQ ALT +GFP+
Sbjct:   31 GGDGPEPNSRQFDPLGLADKNPNMIKYFREAEIKHGRICMLATLGMIVPEFMRLPGDIFQGVDAIGAHDAMVAKGPMYMLLIWIGVWELVSFPTIAALDE-GRMPGDFAFDPLSLGKNPEKLKRYSLAELKNGRLAMLGFSGMITQAALTHNGFPY 185

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A0G4H306_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H306_VITBC)

HSP 1 Score: 183 bits (464), Expect = 6.450e-55
Identity = 102/207 (49.28%), Postives = 137/207 (66.18%), Query Frame = 0

Query:    7 ASALAMVASTEAFVPPTAVRGALCRSNSLETSRVASSVKAAPSMEFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            A AL +++S+ AFVP      A  RS   +  R  S ++A  +++    ++G  GPEP S+NFDPLG A   P+ + F+REAEIKHGR+AML + G++VP F  +PG   + +SVL AH+  VE G M QLLFW+S+ EI+   TV++M EKDREPGDF +DP    + PE+    +  ELKNGRLAM+AFSG +TQ ALTG  FPF
Sbjct:   11 AVALCLLSSSLAFVPSAP---AALRSRQQQPKR--SVMRAQATLDD---MVGGDGPEPFSRNFDPLGLAEQFPQYLTFFREAEIKHGRIAMLAVLGMVVPSFWTLPGR--EGISVLAAHDKFVENGVMGQLLFWVSLWEIVTFKTVVDMDEKDREPGDFSMDPFGWTRTPERARVLRTQELKNGRLAMLAFSGMITQAALTGKNFPF 207

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A6U3XI59_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3XI59_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.730e-50
Identity = 101/220 (45.91%), Postives = 134/220 (60.91%), Query Frame = 0

Query:    1 MKTAFAASALAMVASTEAFVPPTAVRGALCRSNSLETSRVASSVKAAPSMEFAGGLIGAAGPEP---NSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVSV---LDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVCK-NPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            MKTAFA   LA+ AS  AF P                     + K+    EFA GL+G  GPEP    SKNFDP GF+   PE + ++REAE+KHGR AML   G++VPEFVR+PG  +   +V   LDAH+A+++   M Q+L +IS AE +    + NM E DR+PGD+G DP+ +   +PEK++  QL ELKNGRLAM+A  G V   ++TGHGFP+
Sbjct:    1 MKTAFAT--LALAASASAFAPAPV------------------NTKSTQLSEFANGLVGGEGPEPMFSGSKNFDPAGFSERAPEWMNWFREAELKHGRQAMLATVGIVVPEFVRIPGPQFSFEAVPNVLDAHDALIDSS-MKQILLFISFAEAMSMAALSNMNEYDRQPGDWGFDPIGLYPTDPEKRKAIQLKELKNGRLAMVAIGGMVAGASITGHGFPY 199

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A1Z5JGJ4_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGJ4_FISSO)

HSP 1 Score: 167 bits (422), Expect = 1.230e-48
Identity = 92/173 (53.18%), Postives = 112/173 (64.74%), Query Frame = 0

Query:   51 EFAGGLIGAAGPEP------NSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQDVS---VLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVC-KNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            EFA G +G  GPEP       SKNFDPLGFA   PE + +YREAE+KHGR AML + G +VPEFVRVPG+ +   S   V+ AH+A+ E   M Q+  WIS  E      + NM E DR PGDFG DPLN+  K   K++  QL ELKNGRLAM+A  G V Q A+TG+GFP+
Sbjct:   31 EFAKGYVGGEGPEPMFIGDTGSKNFDPLGFATKTPEWLPWYREAELKHGRAAMLAVAGFVVPEFVRVPGEQFSFESIPKVIQAHDALPES--MIQIFGWISFLEASSFAALANMNEFDRVPGDFGFDPLNLYPKEAAKRKEMQLKELKNGRLAMVAIGGMVAQSAITGNGFPY 201

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BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Match: A0A7S1UUQ5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUQ5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.610e-48
Identity = 88/172 (51.16%), Postives = 117/172 (68.02%), Query Frame = 0

Query:   52 FAGGLIGAAGPEP------NSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGICGLIVPEFVRVPGDIYQ-DV--SVLDAHNAMVEKGPMWQLLFWISVAEILLSPTVINMGEKDREPGDFGLDPLNVC-KNPEKKERYQLAELKNGRLAMMAFSGAVTQMALTGHGFPF 213
            FAGG++G  GPEP      +S NFDP+GFA   PE + +YREAE+KH R AML   G++VPEFVR+PG+ +  D   +VL AH+A+ +   M Q+  WIS  E    P + NM   DR PGDFG DPL++  ++PEK++  QL+ELKNGRLAM+A  G V+  A+TGHGFP+
Sbjct:   31 FAGGMVGGEGPEPMPFAKGSSVNFDPVGFAERSPEWLPWYREAELKHCRAAMLATVGMVVPEFVRIPGEQFSFDAIPNVLQAHDALPDS--MIQIFGWISFLEACTFPALANMNSYDRAPGDFGFDPLSLFPEDPEKQKEMQLSELKNGRLAMIAIGGMVSGAAVTGHGFPY 200

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3375.9019.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQJ9_ECTSI	7.540e-101	73.71	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835ZCB2_9STRA	3.300e-84	69.32	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A835Z019_9STRA	4.010e-82	61.90	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7R9U7U0_9STRA	5.080e-74	60.53	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S1XSJ2_9STRA	1.280e-65	54.81	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S1U797_9STRA	9.550e-60	59.62	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A0G4H306_VITBC	6.450e-55	49.28	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A6U3XI59_9STRA	1.730e-50	45.91	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A1Z5JGJ4_FISSO	1.230e-48	53.18	Light-harvesting complex I chlorophyll a/b binding...	[more]
A0A7S1UUQ5_9STRA	9.610e-48	51.16	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 58..214 e-value: 4.0E-37 score: 129.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 60..204 e-value: 1.4E-35 score: 123.2
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 8..208
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 8..208
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..13
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..215
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 14..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..18 score: 0.573
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 60..211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3375	contig	H-paniculata_contig3375:11276..16732 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3375.9019.1	mRNA_H-paniculata_contig3375.9019.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig3375 11276..17657 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig3375.9019.1 ID=prot_H-paniculata_contig3375.9019.1|Name=mRNA_H-paniculata_contig3375.9019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
MKTAFAASALAMVASTEAFVPPTAVRGALCRSNSLETSRVASSVKAAPSM
EFAGGLIGAAGPEPNSKNFDPLGFAAAKPENVLFYREAEIKHGRMAMLGI
CGLIVPEFVRVPGDIYQDVSVLDAHNAMVEKGPMWQLLFWISVAEILLSP
TVINMGEKDREPGDFGLDPLNVCKNPEKKERYQLAELKNGRLAMMAFSGA
VTQMALTGHGFPFTG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln