prot_H-paniculata_contig3375.9018.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3375.9018.1
Unique Nameprot_H-paniculata_contig3375.9018.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length345
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3375.9018.1 vs. uniprot
Match: A0A6H5KVG3_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVG3_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.290e-63
Identity = 123/244 (50.41%), Postives = 158/244 (64.75%), Query Frame = 0 
Query:   18 ITSYDGGDDDD--RGTNSTCAQYTSCTDCLDFYDREEGEGCLWCRVPVSKGTNVGTVESGGGNGGGLCLQRSKAQDRCEIGELQASCEEGIGWYVLVLSLCAMMSCCCFLTMAKKFAAVWHERRWRAASGGGDLTHPLLDDEEREEQAHEAVIRGSLVDGLGG-SWRCPVCGFDNRPLCKNCDLCDISSEFAEAYWKEKDAPKRKSGS--AKRSGPKIEDGKVG------PKSQLPSAGSGVGD 250
            ++SY   DDD   +  NSTC+++ +C  C+D++ + +  GCLWC VP  +  +V         GGGLC+ R  AQD CE GELQA+C+EG GWYVLVL+L A++      TMA+KF A+WHER W A+  GGDL  PLLD    EEQ HE + R SL D  G  SWRCPVCGFDNRP CK+CDLC +SSEFAEAYWK+K+  + K G+  +K S   +E+GKVG      P    P +GSG G+
Sbjct:    1 MSSYFDFDDDSSQQSGNSTCSKFATCESCVDYFGQGD-VGCLWCNVPKDESRSV--------VGGGLCVPRFGAQDSCEFGELQATCQEGAGWYVLVLTLSALLXXXXXXTMARKFVAMWHERWWLAS--GGDLAVPLLDX-XXEEQQHEVIFRSSLTDSAGNASWRCPVCGFDNRPHCKHCDLCGMSSEFAEAYWKDKETSRPKGGATVSKPSETSVEEGKVGEGGDARPPYSTPDSGSGAGE 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3375.9018.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVG3_9PHAE1.290e-6350.41HECT domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 180..199
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..344
NoneNo IPR availableTMHMMTMhelixcoord: 106..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3375contigH-paniculata_contig3375:5718..10970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3375.9018.1mRNA_H-paniculata_contig3375.9018.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3375 5145..10998 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3375.9018.1 ID=prot_H-paniculata_contig3375.9018.1|Name=mRNA_H-paniculata_contig3375.9018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=345bp
MSTAQHGYEEDYHYMKYITSYDGGDDDDRGTNSTCAQYTSCTDCLDFYDR
EEGEGCLWCRVPVSKGTNVGTVESGGGNGGGLCLQRSKAQDRCEIGELQA
SCEEGIGWYVLVLSLCAMMSCCCFLTMAKKFAAVWHERRWRAASGGGDLT
HPLLDDEEREEQAHEAVIRGSLVDGLGGSWRCPVCGFDNRPLCKNCDLCD
ISSEFAEAYWKEKDAPKRKSGSAKRSGPKIEDGKVGPKSQLPSAGSGVGD
GSSTVAAVTPGPEGGDRSQEERQRGADYAVAVREQEQGEKIGEEESESEA
DESESVPLLGGPRDLTVAALPAGLGSVQGSSGRVGVYIPGVYIF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2