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Homology
BLAST of mRNA_H-paniculata_contig3375.9018.1 vs. uniprot
Match: A0A6H5KVG3_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVG3_9PHAE) HSP 1 Score: 228 bits (582), Expect = 3.660e-61 Identity = 123/244 (50.41%), Postives = 158/244 (64.75%), Query Frame = 2
Query: 80 ITSYDGGDDDD--RGTNSTCAQYTSCTDCLDFYDREEGEGCLWCRVPVSKGTNVGTVESGGGNGGGLCLQRSKAQDRCEIGELQASCEEGIGWYVLVLSLCAMMSCCCFLTMAKKFAAVWHERRWRAASGGGDLTHPLLDDEEREEQAHEAVIRGSLVDGLGG-SWRCPVCGFDNRPLCKNCDLCDISSEFAEAYWKEKDAPKRKSGS--AKRSGPKIEDGKVG------PKSQLPSAGSGVGD 778
++SY DDD + NSTC+++ +C C+D++ + + GCLWC VP + +V GGGLC+ R AQD CE GELQA+C+EG GWYVLVL+L A++ TMA+KF A+WHER W A+ GGDL PLLD EEQ HE + R SL D G SWRCPVCGFDNRP CK+CDLC +SSEFAEAYWK+K+ + K G+ +K S +E+GKVG P P +GSG G+
Sbjct: 1 MSSYFDFDDDSSQQSGNSTCSKFATCESCVDYFGQGD-VGCLWCNVPKDESRSV--------VGGGLCVPRFGAQDSCEFGELQATCQEGAGWYVLVLTLSALLXXXXXXTMARKFVAMWHERWWLAS--GGDLAVPLLDX-XXEEQQHEVIFRSSLTDSAGNASWRCPVCGFDNRPHCKHCDLCGMSSEFAEAYWKDKETSRPKGGATVSKPSETSVEEGKVGEGGDARPPYSTPDSGSGAGE 232
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 230.3 |
| Seed ortholog evalue | 1.3e-57 |
| Seed eggNOG ortholog | 2880.D7FQJ4 |
| KEGG ko | ko:K04678,ko:K10591,ko:K10592,ko:K13305 |
| KEGG Pathway | ko04011,ko04120,ko04144,ko04340,ko04341,ko04350,ko04530,ko04960,ko05169,map04011,map04120,map04144,map04340,map04341,map04350,map04530,map04960,map05169 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | ubiquitin protein ligase activity |
| EggNOG OGs | COG5021@1,KOG0940@2759 |
| EC | 2.3.2.26 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03029,ko04121,ko04131 |
| Exons | 5 |
| Model size | 1636 |
| Cds size | 1035 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3375.9018.1 >prot_H-paniculata_contig3375.9018.1 ID=prot_H-paniculata_contig3375.9018.1|Name=mRNA_H-paniculata_contig3375.9018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=345bp
MSTAQHGYEEDYHYMKYITSYDGGDDDDRGTNSTCAQYTSCTDCLDFYDR EEGEGCLWCRVPVSKGTNVGTVESGGGNGGGLCLQRSKAQDRCEIGELQA SCEEGIGWYVLVLSLCAMMSCCCFLTMAKKFAAVWHERRWRAASGGGDLT HPLLDDEEREEQAHEAVIRGSLVDGLGGSWRCPVCGFDNRPLCKNCDLCD ISSEFAEAYWKEKDAPKRKSGSAKRSGPKIEDGKVGPKSQLPSAGSGVGD GSSTVAAVTPGPEGGDRSQEERQRGADYAVAVREQEQGEKIGEEESESEA DESESVPLLGGPRDLTVAALPAGLGSVQGSSGRVGVYIPGVYIF* back to topmRNA from alignment at H-paniculata_contig3375:5145..10998- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3375.9018.1 ID=mRNA_H-paniculata_contig3375.9018.1|Name=mRNA_H-paniculata_contig3375.9018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5854bp|location=Sequence derived from alignment at H-paniculata_contig3375:5145..10998- (Halopteris paniculata Hal_grac_a_UBK monoicous) CTGTGCTCGGAGGTGGGCCATCGCTACGATGTCCACTGCACAACATGGCT
ATGAGGAAGACTACCATTACATGAAATATATAACTTCCTATGATGGAGGT
GACGACGATGATCGTGGAACCAATTCTACTTGCGCTCAATACACTTCGTG
CACAGACTGCCTGGACTTCTATGACAGGGAGGAAGGCGAGGGGTGTTTAT
GGTGCCGCGTTCCTGTCTCCAAGGGCACAAACGTGGGGACTGTTGAAAGC
GGAGGTGGAAATGGTGGCGGCTTATGCTTGCAGCGATCCAAGGCACAAGA
CAGATGTGAAATCGGCGAGCTACAAGTGAGAGAGGGGACACATATCGCAC
TGACTGTTGTACTTCACTATTTTAAAGTTTTTTTCACATAATAGGCTCGT
TGCACTTGTTACGCGAGTACACAAGTCAGGTTATCAACCATCCCGAAGGG
TAGCACGGTTGCCTATTGTCATTTCGACTTTTGGCCAGGCTAGGGAGGTC
TAAATTTCCGTACGGACGCGACTAAGCCCGTTTAAAGTTGTGCGTTTTCT
GCGCAGTGAATAATTCAGTAGGTATAAGGGGACTTTAGACAAAGAACACC
AGCAGATACTCCGCAAGCACGTAATTTACTGTTGGTAGCGACTTTTGCAT
GTGAGCACAGGGTTTGTTTCCGTGACTTCTCCTACTCTAGTGCTTCAACC
AGGCAGTAGTCTCCCACCTCCTGCCTTGGACATTCACGGTGGTTTTAATT
ACCCTTGCAACGACGAAATGGATTTTCCCCGATCGTTCACCTTCGAAGGA
TGTGACGCCGGGGCCTAACCCGGTTCCTTTGGCCGCATGGTGCACATCGC
AGTCAGTATACAGCATTCACAGTAGGAGTACCGTCGTCTGTCTGATAGGC
TCATGATCCCACCCGAATGATGAATTTCTTGCGAACGGTAGGTATGATGC
ATCGGAGCAACCGTTTAACCTTGAAACGCGATATACGTTCACCGATGACG
CAAACCCGCAGCAGGAACAAGCACGGGTAGGACTGTCATAATTTACAATT
ATGTATGCACTGGAGACGTTTCACGCCAGTCAAATTCTCCTTTATCAAAT
TATCTCAACTTCTTTCGCAACAGCTGCAGGAGTTGACCCAATTATAACCG
GTATTTGTCATGTCTGTACCACCCTATCGTAAACACCATCAATTCACCCC
CAAGGCATCCTGTGAAGAGGGTATCGGTTGGTACGTGCTGGTGTTGTCGC
TCTGCGCGATGATGTCCTGCTGCTGCTTCCTCACTATGGCGAAGAAGTTC
GCTGCAGTCTGGCACGAGCGAAGGTGGAGGGCCGCTAGCGGCGGTGGTGA
TCTAACCCATCCGTTGCTGGACGACGAGGAACGAGAGGAGCAAGCACATG
AGGTAGGCTATTTCTTTAGCTTTATACTTGTGTTGACATGTGTTTCTTGG
GATTGACCTTATCGTGCGAGCCCCACCCACTCACCTCGGCACGAACGTTT
TGAGCATTAAGGCACGCAGCGATTATGAACTGTGGACCAGTCTCTTTTGT
CCGTGAAATTCTTTATCGTCGAGTTCTCCAACGTGATCTCACATGCAGCA
TGAGTGATGCCATTTGTCACCTTCTCCAGCACGCCGGAAGTTACTAGGCG
TTTTTTCTGATTGGCAGTTCAGATGCCGTCCATGCATGGGCGGGGAGAGG
CACTGCCTTACCCCCACTGAATGGGAATATTCCAAAAGTGAAAATCCTTT
CTCCACATTGTGCAGCATCAGTTTTCACGGCGAAAGTGTTGATATAAAGC
GTGGAGACCTGAAACTGCGCTCCCTCCCGGACTCAACGCTTCGCTGCCGT
TTTATATTCTCTTGTTAGGCTGTGATTCGAGGTAGCCTTGTGGACGGATT
AGGGGGTTCTTGGCGATGCCCAGTATGCGGCTTTGATAACCGTCCCCTTT
GCAAAAACTGTGACTTGTGCGATATCAGCTCAGAGTTTGCCGAGGTAAGC
GAAGAACGCCTGATCGTAGGTTTGTTTTTTTGTATTCCTACCCAGTCATC
TGTGAGGGTGTTGAAGTTCCCATTAGTAAGTTAACCCTGCCACAGTCAGT
TGAAGTATATACCTATAAACCTCATATCGTAACTCCATTGTACCCATAGT
GAGGCTATGCAGCTGACTTTAATCTGCAGTTGTATGCACCCATCAGCAAA
TAAAATTAAAAGGGAATGTTGTCGTTCGGATCGATTCCAATGTGTTTTGC
CGTGTTATTGGGGTAGATGTGCTTCCCAAGATCTTGATACGTTGGGATTC
AGAACCTATTACGCCACACACGACACCGAGGTCTCCACGTTTTTGTAAAA
AATGGCCATTTCCACAGTTGATTGTAAATGCGGTATTGTACTGTCCATCA
AAGCCCGAGCCCCGGTACCAAGTTTGGTTCCGACGTTACACGGCATGCTC
CAGTCAATTTGAGTTCATCACCGTATCTCCCCCAGAATGAGGGTTTGTAA
CCCTGATTTTTACAAACGTTTGAAGCACGAAACGCACATATTGAGCGCGA
AGATTGCGGTTTGGCACGCGACGCACGTCACTAATCAGGCAATCTCCTTG
ATTGTGTGCTTGACCACAGAACGATATTGCGTGAGACGGCTATAGGTCAT
TTGGTCACGACTCCCCAGATGGCATCAGTTTTTCCTCATGTTATATGTTT
GTGAAGCAATGGACGATCCCGTGATCTCAATTGAACTCATACGCGACTCC
TATAGGGGCCCTTCACTCTTCTGGTTGTTGTCTGAATGGTCCGTACAATA
TGCGGCACGGGAATCGTCGACAACGATGCGGAAAGGGCTAATGATAGTAT
TTCGATCCGACATCGCATGTACAAGGTTGCAAGGCTGCTGACAGCATCCG
CCACGCCAGCATCAGTCGACGGCATATGCCGAGAAACTAATTGCAGAGCA
CCCATATCGTGCAAACGCTTCACCCTTGTGCTCCTGTAAACGAAATTAAC
GGCACTCTGAAGTCACCTTCTTGTACAATCCTGGTGGAATTGACAACATC
TCACCAAAGAGAGGATTTGAAGAACGTTGGGTACCTGGAGGCCCCGATAC
CGTACGTGCCGGAGTATAACTCCGGTACGGAGTATACCCCCCCCCATCCA
TGATTATCAACGCCCGGTGATAAGTTCGACAAAGTTAGATAAACGATTGT
TCATTACTGGGGGTACGCGAAATTCCCCCCCCTAGGTGCTTGATGGAGAC
GTCCCTCCATGGCTAACGGGCTGTAAGTAAAATACGTGAATCCATGTGAT
GGTGTAAAATCAATACAACGCGTGGTGTGCACAATAGACACATCCCACGG
TATCTCAGGGTAGACCAGTTTGCTCTGTAGGTGCTACCTGCCGAGTGTAG
CTGCTGCCATGGAGTGATGTAAGATGTATGGCGTGATTTTTATATAATTA
CTATCTTCAGGCTGACGGTCGACGCGATCGCATTGCTTTGTTGGATGGGA
AATGTATTGCGTGATTCTTGTCACGTGATCGGTCTTGCTCCAATGGGCTT
GCGGCTTTTTCTTTATATTTTCTCATCAGCCTTTTATTTATTTATCTATC
TTCGTTTATCGCGGCAGGAATGATTAAACTTGGCTATTAAACTCCACTGT
CATCACATCACACTTCAACGTTATACCAGGTATTCAAACAAGCGGTAGTA
ACTTGCTCCGAACAATGCGGGTACCTCCCTCCCTTTATCACCCCCACCCC
CCCCTACTGCCTGCCGAAGGGAGTTGACAAAGTGACTCTTCCTATTCCTA
GTAGTGTGAAATGTCTTGAAGTATCCATGTACTCCCTCGCCTATTTGGGG
TGGTTGCCTTCCTGCCGCGTCCCGTCACCTGTTAGAGCATACAGCGTCAT
AAATAAGCGAGGCTCGAAAGTTGTGAAGAGTCACCCCATTTCGTCGCTCT
ACCTCACTCCCTGTATCTTGTGGATAATGACATTTTGAACGACACCGTTG
CTGCGCCCTACAACCGGTCGACAGGCCTATTGGAAGGAAAAGGACGCCCC
GAAGCGCAAGAGCGGCAGTGCCAAGGTGTGTAGGGATATTCTGCGAAGTG
TTGGACTAGATGAAAGGCGACAATATATATATATTTAAGATGGTCGGTTG
TTGTTGTCCTTTTAAGAGACAATCCTATTTCGCTGGTGGCTGGAAGTCTC
GCTGCGACGGGTATTGATAAGCGCCGCTTACTTTGGTGAATCTATCGGCG
AGGATCCCCGATGTTTTCAGCAAAAGAGTCGTTGGTCCCCCCCCCGTCTT
CTAGCGGAAAGAACATACAGCAAATTTATTGAGATTGCGTCGGTCCGGAG
TGCATTGGCAGAAAATACCTCGCTTACTGCACAAAACCTCCGTACAGTAC
AGATATATTTCAAGTTTTGGCATGGTCTCTCGAGGAAAAACACTGCATGG
AATAGGCAATAATGCTGACACTGACGTTTATTTCGCATGCAGTTTTACCT
AAATCCCACTAGACCAGAACCGCCAACCGTCATCGCTTGCGCAGCAGTAC
ATCCCCGTAAGCAGCCGGGCTCGCTCGTCATCTCAAGATGACAAGTCAGT
GTTCGTCCCAACCTCTAACCGCCTCAAGAGGCATACGCCAACCTGCCTAT
CGCGCTCACAGAATCCCCCCTTATTGATATAGTTTTGCTGATAATTCTAT
GCAAGTGAGATCAAATGTCAGCTGCGTAACCTCAACATGGGTCCGATGGA
GTGATTATGTCAGCACAATACACCTCTTCAACCATGGCAAACATCAAATT
GGAGTTGACTGGCAAATGAGGCTCGCGGTGGGCGAATCAGGTATGTTATT
TCTGTCATACGTTCATGTGAAAGCTATTCCACCCTCCCCCCTCCCCCCCC
CTCCTGCGCGCGGAGCAGCGTTCTGGCCCAAAAATAGAAGATGGCAAGGT
TGGGCCCAAGTCGCAGCTGCCCAGCGCCGGTAGCGGCGTCGGAGATGGTA
GCTCGACCGTCGCGGCGGTTACTCCTGGGCCGGAAGGTGGAGATCGCTCG
CAAGAAGAACGACAAAGAGGTGCTGACTACGCTGTTGCCGTGAGAGAGCA
GGAACAAGGAGAAAAGATTGGTGAAGAGGAGAGTGAGTCAGAGGCGGACG
AATCGGAGTCGGTGCCTCTTCTTGGTGGCCCACGCGATTTAACCGTGGCC
GCGCTACCGGCCGGGCTGGGGTCTGTCCAAGGCAGCAGTGGGCGAGTGGG
TGTATATATACCTGGTGTATATATTTTTTAATATTTTGTAAGAGGAGGAA
CGGGAATTTTAGCATCACGCGGGTACTTGTTTTTCTCTTTACTGCTCCTT
GCCTGAAAGGAGACCCGGTAGTGAGCGATGTATCCGTGTCGGTGACCTCA
TTTTTTTCTGTTTTTTTTTTTTGCGGTTCGCACCTCTTGGGTATGCACCT
GGTTACGACCGTGCCTATCCCGTACTTGCTCCCGGCCCCCTTTGTTTACG
CTGTCTTTTTATGTATGTGGGCGAAGTATAAGCAGGGTGACACTGCTCTG
CTGTACGAACATATTAACTGCATGTCGCGTACAAAAGGTGTGATCATGTC
AAAGTCATGGGCATGTTTTTTTTCTTCTCGTGAGATATTGCACAAGCCAC
TTTCAAGTAAGGAACCGTAAAGCTCCCATTGGAAAAAGATATACATGAAA
AGATGAAAGGGTTAATCTTTTTATTATCCATTATCTGCAAAAGTTGAACG
GACCCGACCCGACTGTCCCAGTGAGCTGAGTCGATTTTTCGTTTTGTGTG
CATGTGCTTGCCTGACGATGCTGACGACGCCGCGATGCTACATATGGAAA
TCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3375:5145..10998- >mRNA_H-paniculata_contig3375.9018.1 ID=mRNA_H-paniculata_contig3375.9018.1|Name=mRNA_H-paniculata_contig3375.9018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at H-paniculata_contig3375:5145..10998- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCCACTGCACAACATGGCTATGAGGAAGACTACCATTACATGAAATA TATAACTTCCTATGATGGAGGTGACGACGATGATCGTGGAACCAATTCTA CTTGCGCTCAATACACTTCGTGCACAGACTGCCTGGACTTCTATGACAGG GAGGAAGGCGAGGGGTGTTTATGGTGCCGCGTTCCTGTCTCCAAGGGCAC AAACGTGGGGACTGTTGAAAGCGGAGGTGGAAATGGTGGCGGCTTATGCT TGCAGCGATCCAAGGCACAAGACAGATGTGAAATCGGCGAGCTACAAATG TCCACTGCACAACATGGCTATGAGGAAGACTACCATTACATGAAATATAT AACTTCCTATGATGGAGGTGACGACGATGATCGTGGAACCAATTCTACTT GCGCTCAATACACTTCGTGCACAGACTGCCTGGACTTCTATGACAGGGAG GAAGGCGAGGGGTGTTTATGGTGCCGCGTTCCTGTCTCCAAGGGCACAAA CGTGGGGACTGTTGAAAGCGGAGGTGGAAATGGTGGCGGCTTATGCTTGC AGCGATCCAAGGCACAAGACAGATGTGAAATCGGCGAGCTACAAGCATCC TGTGAAGAGGGTATCGGTTGGTACGTGCTGGTGTTGTCGCTCTGCGCGAT GATGTCCTGCTGCTGCTTCCTCACTATGGCGAAGAAGTTCGCTGCAGTCT GGCACGAGCGAAGGTGGAGGGCCGCTAGCGGCGGTGGTGATCTAACCCAT CCGTTGCTGGACGACGAGGAACGAGAGGAGCAAGCACATGAGGCATCCTG TGAAGAGGGTATCGGTTGGTACGTGCTGGTGTTGTCGCTCTGCGCGATGA TGTCCTGCTGCTGCTTCCTCACTATGGCGAAGAAGTTCGCTGCAGTCTGG CACGAGCGAAGGTGGAGGGCCGCTAGCGGCGGTGGTGATCTAACCCATCC GTTGCTGGACGACGAGGAACGAGAGGAGCAAGCACATGAGGCTGTGATTC GAGGTAGCCTTGTGGACGGATTAGGGGGTTCTTGGCGATGCCCAGTATGC GGCTTTGATAACCGTCCCCTTTGCAAAAACTGTGACTTGTGCGATATCAG CTCAGAGTTTGCCGAGGCTGTGATTCGAGGTAGCCTTGTGGACGGATTAG GGGGTTCTTGGCGATGCCCAGTATGCGGCTTTGATAACCGTCCCCTTTGC AAAAACTGTGACTTGTGCGATATCAGCTCAGAGTTTGCCGAGGCCTATTG GAAGGAAAAGGACGCCCCGAAGCGCAAGAGCGGCAGTGCCAAGGCCTATT GGAAGGAAAAGGACGCCCCGAAGCGCAAGAGCGGCAGTGCCAAGCGTTCT GGCCCAAAAATAGAAGATGGCAAGGTTGGGCCCAAGTCGCAGCTGCCCAG CGCCGGTAGCGGCGTCGGAGATGGTAGCTCGACCGTCGCGGCGGTTACTC CTGGGCCGGAAGGTGGAGATCGCTCGCAAGAAGAACGACAAAGAGGTGCT GACTACGCTGTTGCCGTGAGAGAGCAGGAACAAGGAGAAAAGATTGGTGA AGAGGAGAGTGAGTCAGAGGCGGACGAATCGGAGTCGGTGCCTCTTCTTG GTGGCCCACGCGATTTAACCGTGGCCGCGCTACCGGCCGGGCTGGGGTCT GTCCAAGGCAGCAGTGGGCGAGTGGGTGTATATATACCTGGTGTATATAT TTTTTAACGTTCTGGCCCAAAAATAGAAGATGGCAAGGTTGGGCCCAAGT CGCAGCTGCCCAGCGCCGGTAGCGGCGTCGGAGATGGTAGCTCGACCGTC GCGGCGGTTACTCCTGGGCCGGAAGGTGGAGATCGCTCGCAAGAAGAACG ACAAAGAGGTGCTGACTACGCTGTTGCCGTGAGAGAGCAGGAACAAGGAG AAAAGATTGGTGAAGAGGAGAGTGAGTCAGAGGCGGACGAATCGGAGTCG GTGCCTCTTCTTGGTGGCCCACGCGATTTAACCGTGGCCGCGCTACCGGC CGGGCTGGGGTCTGTCCAAGGCAGCAGTGGGCGAGTGGGTGTATATATAC CTGGTGTATATATTTTTTAA back to top
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