mRNA_H-paniculata_contig33744.9017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33744.9017.1
Unique NamemRNA_H-paniculata_contig33744.9017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.030e-23
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    1 WLANLEKSLELAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTITNDYRLLSALVDRVCAEPKIAAY 219
            WL NLEK+L  AGG YFAGG+LSIGDIAVVAR++ +KEG  SLDGIP++I ++Y LLSAL++RV AEP IA Y
Sbjct:  132 WLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEG--SLDGIPTSIVDEYPLLSALIERVNAEPNIAKY 202
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BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 6.320e-21
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 WLANLEKSLELAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTITNDYRLLSALVDRVCAEPKIAAY 219
            WLANLEK+L+LAGG+YFAG +LSIGDIAVVAR+  + +GT   +G+PST+ ++  L+S+LV RV AEP+I AY
Sbjct:  129 WLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGT--FEGVPSTLLDESPLVSSLVQRVMAEPRIVAY 199
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BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.230e-20
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 WLANLEKSLELAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTITNDYRLLSALVDRVCAEPKIAAY 219
            WL N EK+L+LAGG YFAG +LSIGDIAVVAR+  + +GT   +G+PST+  ++ LLS+LV R+ AEP+I AY
Sbjct:   79 WLTNSEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGT--FEGVPSTLLEEFPLLSSLVQRIMAEPRIVAY 149
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BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.010e-19
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 WLANLEKSLELAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTITNDYRLLSALVDRVCAEPKIAAY 219
            WLANLEK+L+LAGG YFAG +LSIGDIAVVAR+  + +GT   + +PS I  ++ LLS+LV RV AEP+I AY
Sbjct:  129 WLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFD-ESVPSAILEEFPLLSSLVQRVMAEPRIVAY 200
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BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.370e-19
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 WLANLEKSLELAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTITNDYRLLSALVDRVCAEPKIAAY 219
            WL NLE++L+ AGG YFAGG+LSIGDI VVAR+  +K G  +LDGIP TI +D+ LLSALV  V +E KI  Y
Sbjct:  130 WLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRG--ALDGIPDTIVDDFPLLSALVQSVMSEEKIVKY 200
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BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Match: A0A2J7ZU59_9CHLO (Hematopoietic prostaglandin D synthase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZU59_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 2.480e-6
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   31 LAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTITNDYRLLSALVDRVCAEPKIAAY 219
            LA G Y AGG+LS+GDIAV   +  +  G   +DG+P  + + Y ++ A  +++ +EP I AY
Sbjct:  136 LASGGYIAGGKLSLGDIAVYVSLSNLVSGF--MDGVPKDLLDGYPVIKAFHNKIASEPAIKAY 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33744.9017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
B1N8E7_9PHAE1.030e-2368.49Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
D8LHF0_ECTSI6.320e-2161.64Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JAZ7_9PHAE2.230e-2058.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK37_ECTSI1.010e-1961.64Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E6_9PHAE1.370e-1961.64Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
A0A2J7ZU59_9CHLO2.480e-639.68Hematopoietic prostaglandin D synthase n=1 Tax=Tet... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33744contigH-paniculata_contig33744:12..908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.6068807-CDS-H-paniculata_contig33744:11..1671622930040.6068807-CDS-H-paniculata_contig33744:11..167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33744 12..167 -
1691481122.1097188-CDS-H-paniculata_contig33744:11..1671691481122.1097188-CDS-H-paniculata_contig33744:11..167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33744 12..167 -
1622930040.6318047-CDS-H-paniculata_contig33744:845..9081622930040.6318047-CDS-H-paniculata_contig33744:845..908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33744 846..908 -
1691481122.1241803-CDS-H-paniculata_contig33744:845..9081691481122.1241803-CDS-H-paniculata_contig33744:845..908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33744 846..908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33744.9017.1prot_H-paniculata_contig33744.9017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33744 12..908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33744.9017.1

>prot_H-paniculata_contig33744.9017.1 ID=prot_H-paniculata_contig33744.9017.1|Name=mRNA_H-paniculata_contig33744.9017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
WLANLEKSLELAGGDYFAGGRLSIGDIAVVARILGMKEGTPSLDGIPSTI
TNDYRLLSALVDRVCAEPKIAAY
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mRNA from alignment at H-paniculata_contig33744:12..908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33744.9017.1 ID=mRNA_H-paniculata_contig33744.9017.1|Name=mRNA_H-paniculata_contig33744.9017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=897bp|location=Sequence derived from alignment at H-paniculata_contig33744:12..908- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTGGCGAACCTGGAGAAGAGCCTGGAGTTAGCCGGCGGCGACTACTT
CGCCGGAGGCAGGGTGGGTGAAAATGTTTTTACGATAGTGCCGGTCTCGT
GAATCTGTGCAACGTTTTCCGGTGTTGATTTTGTATTACATGGAACTTCT
CATCGGAGTGATTCGGTTTCTAAAGGTAGAGAGTGGGATGTCACGGGCAG
AATTATGCGAGCTCAGCCGCACCTCCCTACTCTTCATCCTGAAACGACGC
ACCGATCAGAGGTAATCATTGGTTTGACAGCTCTATTATTCGTCATGATA
TGTGCGCGTTATATAACAAAGATGGCGCTTGAAGATACTTTCGATACTCT
CGTGTCGTTTTCAGTCTCTGTTGTGTAACTTGTCTCGTACTGCATCACGT
AGCGCGTCCTCTCTTCCTCCCCACCTCACACCTCCCACACACTATACCAG
CCAATGTTTGCATACTTGTAGCCCCCCGTTAGCTTAAAATTAATATCTAG
TTCCTCTAGTCCGCCGTCGGAAGAAAAGCTCGTTAGCCTGATATCCTGGA
TAACCCCTACTCCTCGAAACCGTCTTCCATCTATTTGGCGTTCTAATATC
CGTATATCGGTGGAAACGTGGGCTTCGCTCATACAGTATTCGTGTGGGCA
TCGTATCCGTTTATGGTATATTGTGGTCGCGTTCTATCCGCTCTCCCTTG
ATTCTGTTCCCCCACCCCCTTCTGTTCCGTTGTGTATACAGCTCTCCATC
GGTGACATTGCTGTTGTGGCGAGGATACTCGGGATGAAGGAGGGGACGCC
CTCCCTGGATGGAATCCCGAGCACCATCACCAACGACTACCGATTGCTGT
CCGCTCTGGTTGATCGCGTTTGTGCTGAGCCAAAAATCGCCGCCTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig33744:12..908-

>mRNA_H-paniculata_contig33744.9017.1 ID=mRNA_H-paniculata_contig33744.9017.1|Name=mRNA_H-paniculata_contig33744.9017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig33744:12..908- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCTGGCGAACCTGGAGAAGAGCCTGGAGTTAGCCGGCGGCGACTACTT
CGCCGGAGGCAGGTGGCTGGCGAACCTGGAGAAGAGCCTGGAGTTAGCCG
GCGGCGACTACTTCGCCGGAGGCAGGCTCTCCATCGGTGACATTGCTGTT
GTGGCGAGGATACTCGGGATGAAGGAGGGGACGCCCTCCCTGGATGGAAT
CCCGAGCACCATCACCAACGACTACCGATTGCTGTCCGCTCTGGTTGATC
GCGTTTGTGCTGAGCCAAAAATCGCCGCCTACCTCTCCATCGGTGACATT
GCTGTTGTGGCGAGGATACTCGGGATGAAGGAGGGGACGCCCTCCCTGGA
TGGAATCCCGAGCACCATCACCAACGACTACCGATTGCTGTCCGCTCTGG
TTGATCGCGTTTGTGCTGAGCCAAAAATCGCCGCCTAC
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