mRNA_H-paniculata_contig33736.9016.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33736.9016.1
Unique NamemRNA_H-paniculata_contig33736.9016.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33736.9016.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.280e-6
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   28 STKCTYKCSGNDAETCGGSSAITIYK---KLGVSPTPAPAEQGY---IGCYGDAAQ-RIMVLQSESKQGMTTQ 225
            ST CTY CSG+ A+TCGG +A  +Y        SPTP+P E+     +GCYGD  + RIM     S   MTT+
Sbjct:  337 STGCTYACSGDSAQTCGGYNAANVYLYPVDSTPSPTPSPTEEDSSLALGCYGDDPEARIMDELVLSDSSMTTE 409
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BLAST of mRNA_H-paniculata_contig33736.9016.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 8.150e-6
Identity = 32/73 (43.84%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:   28 STKCTYKCSGNDAETCGGSSAITIYK---KLGVSPTPAPAEQGY---IGCYGDAAQ-RIMVLQSESKQGMTTQ 225
            ST CTY CSG+  +TCGG  A  +Y+       SPTP+P E      +GCYGD  + RIM     S   MTT+
Sbjct:  367 STDCTYACSGDTDQTCGGFDAANVYRYPDDSTPSPTPSPTEAASFVALGCYGDDREDRIMDELVLSDPSMTTE 439
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BLAST of mRNA_H-paniculata_contig33736.9016.1 vs. uniprot
Match: W9WCL3_9EURO (Uncharacterized protein n=5 Tax=Herpotrichiellaceae TaxID=43219 RepID=W9WCL3_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-5
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   28 STKCTYKCSGNDAETCGGSSAITIY------KKLGVSPTPAP----AEQGYIGCY--GDAAQRI 183
            S+KC+ KC+GN A+TCGGS+AI++Y      K    +P   P    ++ GY+GCY  G+ A+ +
Sbjct:  691 SSKCSMKCAGNSAQTCGGSNAISLYNNTQYIKPSNPNPVNVPNQPGSQYGYVGCYTEGNGARAL 754
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BLAST of mRNA_H-paniculata_contig33736.9016.1 vs. uniprot
Match: H6BXS5_EXODN (WSC domain-containing protein n=1 Tax=Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) TaxID=858893 RepID=H6BXS5_EXODN)

HSP 1 Score: 49.7 bits (117), Expect = 4.010e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   28 STKCTYKCSGNDAETCGGSSAITIY------KKLGVSPTPAP----AEQGYIGCYGDAA 174
            S+KC   C+GN+ +TCGGSSAI++Y      K    +P   P    ++ GY+GCY + A
Sbjct:  693 SSKCNMACAGNNKQTCGGSSAISLYNNTQYVKPYNPNPVSVPNQPGSQYGYVGCYAEPA 751
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BLAST of mRNA_H-paniculata_contig33736.9016.1 vs. uniprot
Match: A0A6H5K223_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K223_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 4.670e-5
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    7 DTIGEPNSTKCTYKCSGNDAETCGGSSAITIYKKLG---VSPTPA----PAEQGYIGCYGDA 171
            DT+GE  ST C++ CSG+  ETCGG +A+++Y        +PTP     P +  Y+GCY D+
Sbjct:   30 DTLGE--STDCSFGCSGDAGETCGGFNAMSVYSTGSDPVETPTPVAVIEPTDPTYLGCYVDS 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33736.9016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JX48_9PHAE1.280e-645.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEK9_ECTSI8.150e-643.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W9WCL3_9EURO2.150e-540.63Uncharacterized protein n=5 Tax=Herpotrichiellacea... [more]
H6BXS5_EXODN4.010e-540.68WSC domain-containing protein n=1 Tax=Exophiala de... [more]
A0A6H5K223_9PHAE4.670e-541.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33736contigH-paniculata_contig33736:1008..1233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size226
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.5585835-CDS-H-paniculata_contig33736:1007..12321622930040.5585835-CDS-H-paniculata_contig33736:1007..1232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33736 1008..1232 +
1691481122.0975726-CDS-H-paniculata_contig33736:1007..12321691481122.0975726-CDS-H-paniculata_contig33736:1007..1232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33736 1008..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33736.9016.1prot_H-paniculata_contig33736.9016.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33736 1008..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33736.9016.1

>prot_H-paniculata_contig33736.9016.1 ID=prot_H-paniculata_contig33736.9016.1|Name=mRNA_H-paniculata_contig33736.9016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
VEDTIGEPNSTKCTYKCSGNDAETCGGSSAITIYKKLGVSPTPAPAEQGY
IGCYGDAAQRIMVLQSESKQGMTTQ
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mRNA from alignment at H-paniculata_contig33736:1008..1233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33736.9016.1 ID=mRNA_H-paniculata_contig33736.9016.1|Name=mRNA_H-paniculata_contig33736.9016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=226bp|location=Sequence derived from alignment at H-paniculata_contig33736:1008..1233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGGACACCATCGGCGAACCGAACAGCACAAAATGTACATACAAGTG
CTCTGGGAATGATGCTGAAACGTGCGGTGGTTCCTCCGCCATCACTATCT
ACAAGAAACTCGGTGTTTCTCCCACGCCTGCTCCGGCGGAACAAGGGTAC
ATCGGCTGCTATGGCGATGCAGCCCAACGGATCATGGTTCTTCAGAGCGA
GAGCAAACAGGGTATGACCACACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig33736:1008..1233+

>mRNA_H-paniculata_contig33736.9016.1 ID=mRNA_H-paniculata_contig33736.9016.1|Name=mRNA_H-paniculata_contig33736.9016.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig33736:1008..1233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGGACACCATCGGCGAACCGAACAGCACAAAATGTACATACAAGTG
CTCTGGGAATGATGCTGAAACGTGCGGTGGTTCCTCCGCCATCACTATCT
ACAAGAAACTCGGTGTTTCTCCCACGCCTGCTCCGGCGGAACAAGGGTAC
ATCGGCTGCTATGGCGATGCAGCCCAACGGATCATGGTTCTTCAGAGCGA
GAGCAAACAGGGTATGACCACACAGGTCGAGGACACCATCGGCGAACCGA
ACAGCACAAAATGTACATACAAGTGCTCTGGGAATGATGCTGAAACGTGC
GGTGGTTCCTCCGCCATCACTATCTACAAGAAACTCGGTGTTTCTCCCAC
GCCTGCTCCGGCGGAACAAGGGTACATCGGCTGCTATGGCGATGCAGCCC
AACGGATCATGGTTCTTCAGAGCGAGAGCAAACAGGGTATGACCACACAG
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