mRNA_H-paniculata_contig33729.9013.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33729.9013.1
Unique NamemRNA_H-paniculata_contig33729.9013.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Match: D7FMU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMU5_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.670e-39
Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 ALDADNVLALYYDNDARLKSIFDKYCTANDRTDGPAALGTMLNIAEFGMVLRDAGLLGGNVKEDDELTVKEARQAFAGAQNDLCGGEDNPPASYEEVGPTIEQV 312
            ALD+D+ LALY+D D+RLKS+FD YC A+DR   PAALG +LNIAEF M+LRD+GLLGGN KEDDELT KEARQAFAGAQNDLCGG D+  A     GP IEQ+
Sbjct:  263 ALDSDDTLALYHDQDSRLKSVFDSYCKASDRPGAPAALGVLLNIAEFRMILRDSGLLGGNNKEDDELTAKEARQAFAGAQNDLCGG-DSYEAPPPGAGPQIEQM 365
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BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Match: A0A7S2UTL8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTL8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.700e-17
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   25 ALYYDNDARLKSIFDKYCTANDRTDGPAALGTMLNIAEFGMVLRDAGLLGGNVKE-DDELTVKEARQAFAGAQNDL-CGGEDN 267
            AL+Y+N+  L  +F++Y  A +  D    L   LNI EFG++LRDAGLLG +  E DDELT KEARQAFAGAQN+   GG  N
Sbjct:    1 ALFYENNLNLIEVFERYAAAAEDRDTGILLADTLNIVEFGLILRDAGLLGRSSLEIDDELTHKEARQAFAGAQNEFELGGATN 83
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BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Match: A0A835YLL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.460e-13
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:    1 ALDADNVLALYYDNDARLKSIFDKYCTANDRTDGP--------------------AALGTM----LNIAEFGMVLRDAGLLGGNVKEDDELTVKEARQAFAGAQNDLCGGEDNPPA--SYEEVGP 297
            AL+ D++LAL +D+   ++++FDKY  +                            A+  +    L+I+ FGM+L DA LLGG  K +DELT+KEARQAFAGAQ+ LCG ED   A  S   +GP
Sbjct:  327 ALERDDILALLFDHHDNMRAVFDKYGKSGSAXXXXXXXXXXXXXXXXXXXXXXXXGAMSALNEESLDISGFGMILEDARLLGGKSKSEDELTIKEARQAFAGAQHALCG-EDEMQALSSSNSLGP 450
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BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Match: A0A7S4DB65_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB65_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 3.950e-7
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 ALDADNVLALYYDNDARLKSIFDKYCTA-NDRTDGPAALGTMLNIAEFGMVLRDAGLLGGNVKE-DDELTVKEARQAFAGAQ 240
            AL  + +LA +YD + +L  +F++Y  +  D           LNIAEF  ++ +A L G +  E DD+LT KE RQAF+GAQ
Sbjct:  236 ALTNNEILATFYDYNIKLVEVFERYAASVEDNKASGFTFADSLNIAEFERIIFEADLAGSSGGEIDDQLTTKEIRQAFSGAQ 317
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BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Match: A0A6V1TG47_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TG47_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 4.070e-7
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 ALDADNVLALYYDNDARLKSIFDKYCTA-NDRTDGPAALGTMLNIAEFGMVLRDAGLLGGNVKE-DDELTVKEARQAFAGAQ 240
            AL  + +LA +YD + +L  +F++Y  +  D           LNIAEF  ++ +A L G +  E DD+LT KE RQAF+GAQ
Sbjct:  321 ALTNNEILATFYDYNIKLVEVFERYAASVEDNKASGFTFADSLNIAEFERIIFEADLAGSSGGEIDDQLTTKEIRQAFSGAQ 402
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BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Match: F0Y071_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y071_AURAN)

HSP 1 Score: 50.4 bits (119), Expect = 5.780e-5
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:    4 LDADNVLALYYDNDARLKSIFDKYCTAND--RTDGPAALGTMLNIAEFGMVLRDAGLLGGNVKEDDELTVKEARQAFAGAQNDL 249
            L+ D VLA +Y++   L  ++  Y  +    + +    L   + +AEF +++ D+ LL     +DDELT+KE RQAFAGAQ D+
Sbjct:  213 LNTDAVLARFYEHHDALLGVYMTYLPSKPPGKAEKMDLLEGYMTMAEFQVLIEDSTLLRSQ-GDDDELTLKEVRQAFAGAQTDI 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33729.9013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMU5_ECTSI1.670e-3970.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UTL8_9STRA3.700e-1754.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YLL6_9STRA2.460e-1339.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DB65_HETAK3.950e-740.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TG47_HETAK4.070e-740.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y071_AURAN5.780e-536.90Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33729contigH-paniculata_contig33729:1335..2350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1e-32
Seed eggNOG ortholog2880.D7FMU5
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1F0@1,2SVUJ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_002550.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.2192276-CDS-H-paniculata_contig33729:1334..14601622930040.2192276-CDS-H-paniculata_contig33729:1334..1460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33729 1335..1460 -
1691481121.948332-CDS-H-paniculata_contig33729:1334..14601691481121.948332-CDS-H-paniculata_contig33729:1334..1460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33729 1335..1460 -
1622930040.2367918-CDS-H-paniculata_contig33729:2164..23501622930040.2367918-CDS-H-paniculata_contig33729:2164..2350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33729 2165..2350 -
1691481121.9597273-CDS-H-paniculata_contig33729:2164..23501691481121.9597273-CDS-H-paniculata_contig33729:2164..2350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33729 2165..2350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33729.9013.1prot_H-paniculata_contig33729.9013.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33729 1335..2350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33729.9013.1

>prot_H-paniculata_contig33729.9013.1 ID=prot_H-paniculata_contig33729.9013.1|Name=mRNA_H-paniculata_contig33729.9013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
ALDADNVLALYYDNDARLKSIFDKYCTANDRTDGPAALGTMLNIAEFGMV
LRDAGLLGGNVKEDDELTVKEARQAFAGAQNDLCGGEDNPPASYEEVGPT
IEQV
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mRNA from alignment at H-paniculata_contig33729:1335..2350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33729.9013.1 ID=mRNA_H-paniculata_contig33729.9013.1|Name=mRNA_H-paniculata_contig33729.9013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1016bp|location=Sequence derived from alignment at H-paniculata_contig33729:1335..2350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTGGACGCTGATAACGTATTGGCTCTTTACTACGACAATGACGCGCG
GCTAAAGTCTATTTTCGACAAATACTGCACGGCCAACGACAGGACAGATG
GACCGGCGGCGCTAGGAACAATGTTGAACATTGCGGAGTTCGGAATGGTG
CTTCGCGATGCTGGTCTATTGGGTGGAAACGTAAAGGTGACCAGGGGGCT
GGTATTCTACAAGTATCAATAAATGGGTTTCTTGATTTGCATCCTCATGA
GGGGTTATTATTAAGTAGATGATACGCACCATACCCGGGCCTGCACATCT
CGGAGATCACCTAGTACATGATTCCTCCGTTCTAAAATAAGGTGCGTGTT
TGTGTTCAATACATTCAACGATCTTCGATGCTTAACATCCCTCGCATTAT
TGAAATCCTGCATGTTGGTTTCGTTGGGTCCCATTTTTGCTTTTCGATTT
AATCCGGCTCGCCTACCAGGTGTGTTAACAGCGCCCAGAATTGCACATGG
ACGATAATCGTTCTGTTTGTTTTTTTGTGTGTGTTTTTCAATGCTATAAA
GGGAAGAAGAATGTACCGTAAAATTGCCGAAAATAGCTTAACTTCGAGTC
AGCATAAAACCAGAATCAAGCGTGGGAACAGCCCTCTAAAGTAGTTCATA
CGAATTTATACTATTTAAGCTATATGAGGTAATTATGGGAGAAAAAAACG
GTTTTGAGCGAAATTCGGCGACGTAGGAAAGAGCGAGTGACCATCGGAAA
TTTCATTGACAGGAACAACGCTCCGTCTTCCCGAGAACGCGTGGTCAATG
GTCTTACAACTACAACATGAAAACCATGAGCATGGCCCTCTTCGCTTCCT
TCCCCATCCCTAACCATTCACATACACCGATAAAAAACAGGAGGATGACG
AGTTAACAGTGAAAGAAGCGAGGCAAGCCTTCGCCGGCGCCCAGAATGAC
CTCTGCGGGGGCGAAGATAACCCGCCAGCCTCATACGAAGAAGTGGGCCC
TACAATAGAGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig33729:1335..2350-

>mRNA_H-paniculata_contig33729.9013.1 ID=mRNA_H-paniculata_contig33729.9013.1|Name=mRNA_H-paniculata_contig33729.9013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig33729:1335..2350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTGGACGCTGATAACGTATTGGCTCTTTACTACGACAATGACGCGCG
GCTAAAGTCTATTTTCGACAAATACTGCACGGCCAACGACAGGACAGATG
GACCGGCGGCGCTAGGAACAATGTTGAACATTGCGGAGTTCGGAATGGTG
CTTCGCGATGCTGGTCTATTGGGTGGAAACGTAAAGGCTCTGGACGCTGA
TAACGTATTGGCTCTTTACTACGACAATGACGCGCGGCTAAAGTCTATTT
TCGACAAATACTGCACGGCCAACGACAGGACAGATGGACCGGCGGCGCTA
GGAACAATGTTGAACATTGCGGAGTTCGGAATGGTGCTTCGCGATGCTGG
TCTATTGGGTGGAAACGTAAAGGAGGATGACGAGTTAACAGTGAAAGAAG
CGAGGCAAGCCTTCGCCGGCGCCCAGAATGACCTCTGCGGGGGCGAAGAT
AACCCGCCAGCCTCATACGAAGAAGTGGGCCCTACAATAGAGCAGGTAGA
GGATGACGAGTTAACAGTGAAAGAAGCGAGGCAAGCCTTCGCCGGCGCCC
AGAATGACCTCTGCGGGGGCGAAGATAACCCGCCAGCCTCATACGAAGAA
GTGGGCCCTACAATAGAGCAGGTA
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