mRNA_H-paniculata_contig3372.9012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3372.9012.1
Unique NamemRNA_H-paniculata_contig3372.9012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3372.9012.1 vs. uniprot
Match: D7FUT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.410e-8
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    4 LLLSSICELALLSKGCFFVVAAVNNWRTVSLFSTMPGRLYLEALLALEELLPSLAILMLTEKRKG 198
            L+L+++C LA+ SKG   V AA+NN  T +LF    GR  LEAL+ALEEL+PS+AI  LT + KG
Sbjct:  207 LVLTAVCGLAMCSKGALLVAAALNNSDTSALFPPSLGRYRLEALMALEELVPSIAIAYLTARGKG 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3372.9012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUT7_ECTSI1.410e-853.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3372contigH-paniculata_contig3372:4444..6272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size330
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3372.9012.1prot_H-paniculata_contig3372.9012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3372 4444..6272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.0839605-CDS-H-paniculata_contig3372:4443..45031622930040.0839605-CDS-H-paniculata_contig3372:4443..4503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3372 4444..4503 -
1691481121.9193578-CDS-H-paniculata_contig3372:4443..45031691481121.9193578-CDS-H-paniculata_contig3372:4443..4503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3372 4444..4503 -
1622930040.1590064-CDS-H-paniculata_contig3372:4904..50581622930040.1590064-CDS-H-paniculata_contig3372:4904..5058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3372 4905..5058 -
1691481121.9303951-CDS-H-paniculata_contig3372:4904..50581691481121.9303951-CDS-H-paniculata_contig3372:4904..5058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3372 4905..5058 -
1622930040.1736634-CDS-H-paniculata_contig3372:6156..62721622930040.1736634-CDS-H-paniculata_contig3372:6156..6272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3372 6157..6272 -
1691481121.9393654-CDS-H-paniculata_contig3372:6156..62721691481121.9393654-CDS-H-paniculata_contig3372:6156..6272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3372 6157..6272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3372.9012.1

>prot_H-paniculata_contig3372.9012.1 ID=prot_H-paniculata_contig3372.9012.1|Name=mRNA_H-paniculata_contig3372.9012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MLLLSSICELALLSKGCFFVVAAVNNWRTVSLFSTMPGRLYLEALLALEE
LLPSLAILMLTEKRKGSSPPRQPPLLLSHPSQMGSDSDFAPYMNSPSLLS
SGAFLPTPDL
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mRNA from alignment at H-paniculata_contig3372:4444..6272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3372.9012.1 ID=mRNA_H-paniculata_contig3372.9012.1|Name=mRNA_H-paniculata_contig3372.9012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1829bp|location=Sequence derived from alignment at H-paniculata_contig3372:4444..6272- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTGCTTTCCAGCATCTGCGAATTGGCGTTGTTGAGCAAGGGTTG
CTTTTTCGTGGTGGCTGCTGTCAATAATTGGCGGACCGTTTCTTTATTCT
CCACTATGCCAGGAAGGTGAGGACGTCCGTAGGCTATTTATTCACTTGCT
CATCGTAAGAGCCGATTCGGGTCGTTTGTTGTGTGATGTTGGCTTCATAA
TCAACCCACCCTCAAGTGTAGGGCAGAGAGTTGCAATAAAATAGGACATG
CCGTGTTCACCGCCAACAGTATGCGAGAGGAACGGAGGCTTGGAAATACG
GAAAAAAACACGTGAAGTTACACGGACGGGGCTTGTTACTCGAATACACC
AGCGGGTTGGGTAACTTTTCCCTCTGGTCTTCTTTGTGTATGGTCTCTAT
CGAGGCCTTCATCCGGAAAACGTTACGTCGGATAAGGTATATGTAACTAC
GCCGATAGGACTCTGTTCTATATGACCTTTACATTTACATTTTATTAGGA
GGAAGATATATTGTGCTGTACTGTACTGTATCTCAAATTTTCCAGTGTAT
TTCTTGAGATATACATGCTAGAGTCTGGTGTAGGGTTGTATTTTTACTCG
GGTATCTCCCGGCCACAAGGTACCTATACTTGCCTAAGATGATATTGTGG
TACCTCATATTGGACTGGTGCTTTTGCATCGCAGGCATTCAAGGGCACGA
ATATGAGGTTGCTTTTGGCAGCATTTCAACTTCCCAGCCTCTTTTTTGGC
GTCTCTTTTTCGATAATCATTTCCCTGTCGTTGTATTTGAAGAAAAAAAG
TGTAGTTCTTTCCAGTACTGTTTCCTGTTTACCGGGTAATGTTCGGTTTT
CCAGACGCCCTCCCGTTATTGTCTTTTCTCCTGTTTTGATACTTGGAAAA
TAGTTTGTGTGCTGCGCTGTATGTGCTGGATTTTTAGCCCTTGATATTGG
TAACTGCTGGCTTCATATGACCGTGCCATCACCTAAATGCGGCGGTCAAG
ATCTATGATGCGGCTGGACTTGGCTCGTTCTCAGTGATGGCAAGGGAGCC
CAAAATGGTATTTTGCCATGTTCTGCGTCAAACCTTCATACCAATGCATT
ACTGTAAATATGTTCATTAGTAGTTATGCTCCTCTCCATTATCATTTTGT
GCAGTTCTTGGGCATCGTTGTAAACCTTCAATTCCTCCGCCAAACGCATA
TTCTTGTCTTTCAGACTCTACCTCGAGGCGTTGTTGGCTCTGGAGGAGTT
GCTGCCCTCCCTGGCTATCCTTATGCTGACCGAAAAACGAAAAGGATCCA
GCCCTCCACGTCAACCTCCCCTGCTATTATCACATCCCTCTCAGATGGGA
TCAGATTCCGACTTTGCGGTGAGATGTGCTACTAAATACTTCTTGTTGGG
CCCGATCTTGAGCAAAATTGTATCCGTCGCCCGTAGTGGAGGTCGAGTTC
TTGAGAACATCGTTTTTTCGTTTTCTATAATTTCGCCGAAAACAATTCTG
TCGTTCGTCTTGTATCTGACCCGAGAAGCGGGTCTACTTGGTGGAATATG
ATTATTATTTGCGTCGATGATCTTGAGCAATGTGAAGACAATGTGAAGAT
CGTAACACAGTAAAGCTACACTGTATATTAAACACGTCACTACGTGGTGC
GCATATCAATCAAGTATTGGGCGTCGACTTGGCCTTATCGGGTGCCGCGG
CGCCGAATGCTCTTCATTCCCTGCCCCTATCCCCTTGTCCTTGGGTTATC
TATCTTTGCGCCAACGCAGCCATACATGAACAGCCCCTCGCTCCTGTCGT
CGGGAGCTTTCTTACCTACACCTGACTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3372:4444..6272-

>mRNA_H-paniculata_contig3372.9012.1 ID=mRNA_H-paniculata_contig3372.9012.1|Name=mRNA_H-paniculata_contig3372.9012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig3372:4444..6272- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTGCTTTCCAGCATCTGCGAATTGGCGTTGTTGAGCAAGGGTTG
CTTTTTCGTGGTGGCTGCTGTCAATAATTGGCGGACCGTTTCTTTATTCT
CCACTATGCCAGGAAGATGTTGCTGCTTTCCAGCATCTGCGAATTGGCGT
TGTTGAGCAAGGGTTGCTTTTTCGTGGTGGCTGCTGTCAATAATTGGCGG
ACCGTTTCTTTATTCTCCACTATGCCAGGAAGACTCTACCTCGAGGCGTT
GTTGGCTCTGGAGGAGTTGCTGCCCTCCCTGGCTATCCTTATGCTGACCG
AAAAACGAAAAGGATCCAGCCCTCCACGTCAACCTCCCCTGCTATTATCA
CATCCCTCTCAGATGGGATCAGATTCCGACTTTGCGACTCTACCTCGAGG
CGTTGTTGGCTCTGGAGGAGTTGCTGCCCTCCCTGGCTATCCTTATGCTG
ACCGAAAAACGAAAAGGATCCAGCCCTCCACGTCAACCTCCCCTGCTATT
ATCACATCCCTCTCAGATGGGATCAGATTCCGACTTTGCGCCATACATGA
ACAGCCCCTCGCTCCTGTCGTCGGGAGCTTTCTTACCTACACCTGACTTG
CCATACATGAACAGCCCCTCGCTCCTGTCGTCGGGAGCTTTCTTACCTAC
ACCTGACTTG
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