mRNA_H-paniculata_contig337.9007.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig337.9007.1
Unique NamemRNA_H-paniculata_contig337.9007.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig337.9007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig337contigH-paniculata_contig337:33880..36182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930039.2573636-CDS-H-paniculata_contig337:33879..339151622930039.2573636-CDS-H-paniculata_contig337:33879..33915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig337 33880..33915 +
1691481121.664014-CDS-H-paniculata_contig337:33879..339151691481121.664014-CDS-H-paniculata_contig337:33879..33915Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig337 33880..33915 +
1622930039.297691-CDS-H-paniculata_contig337:35903..361821622930039.297691-CDS-H-paniculata_contig337:35903..36182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig337 35904..36182 +
1691481121.6760216-CDS-H-paniculata_contig337:35903..361821691481121.6760216-CDS-H-paniculata_contig337:35903..36182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig337 35904..36182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig337.9007.1prot_H-paniculata_contig337.9007.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig337 33880..36182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig337.9007.1

>prot_H-paniculata_contig337.9007.1 ID=prot_H-paniculata_contig337.9007.1|Name=mRNA_H-paniculata_contig337.9007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MYINRSGTYLEQVDETDFFHMLTLTIGNSFFFNASSWGDPLENDDTTSTI
SASWQEHLRNATKSAAAEVASEREGSNETCSDCAEQGLAGLSSWKISAAE
VRFG*
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mRNA from alignment at H-paniculata_contig337:33880..36182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig337.9007.1 ID=mRNA_H-paniculata_contig337.9007.1|Name=mRNA_H-paniculata_contig337.9007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2303bp|location=Sequence derived from alignment at H-paniculata_contig337:33880..36182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACATCAATCGCAGCGGAACCTATCTTGAGCAGGTGCGTTTTGAAAA
GCAAATGAGTACTGCTGTAGTTTGCAGGAGCCATCTTCCGAGATTCAGGA
TCAATTATCACGCCTACGGGCGTACAACGTTTGTTTCGGGCACGATTTGG
AGCTAATATCTCCGAAATTCCCCAAAAAGCTAGGGTGAGCTAGAGTTTTG
GTCTTACTAAGTAGCTATCCATCGCACACACAGCGATCCTTTTCCCCTAT
GAATTTGGATTATGACGGAAATCTCGAGGTACTGTGAATGAGTCATCTTA
CGGTAGGGGGGGGGGGGGCAATCGTTTTACGAAGACCGCTTTGAGAAAAA
GTCCTGCAAAATAACGCGATTCAGAGCCATGCTAATTGCATGTGTTTGTG
CATCCCCAAAGGTGCACAGTCCACGAGTTGAAATGGGATTTCTGTTTAAG
GGCAGGCAACAAGTGCAAATATAAAAGAACAAACACCTGATCCCATTCTC
AAAGCGGCTCCTTCGTTAAACAACGAGTCTCAAATACCCCTTTCCTCTAA
CGTAGGATGACATGGATATCAATTGCATGTATTTGTGCAGCCCTTAAGGT
GCACAGTCCACGAGTTGAAATGGGATTTCTGTTTTAAGGGCGGCCAACAA
ATGCAAGAAGAAAGAAGTACACCTTTCCTATCCCCTTTTGAAAGGAGATC
CTTCGTCAAACACAGCGGCTCAAATATCCCTCCCCCTACCGTAGGATGAC
TCGAAGACGCTTGTTGAATCCTTAACACAAGAAAGTTTCTAAAGTTCCTA
AAGTTCTTCTAACTTTAGCATTGTTTTTGGTGTTTTACACCCATAAAAGA
TAAGTATGCTCTACAAAATCGATATTCTCGAGAGGTAGAACCATGTACCA
GAGGCGTTCAACGACTCGGGAGTGGGGCTGGGGGGGAGGGTTTTCAGAAA
GAGGCAGTTTAATCTTGTTTCGCATGCCATAGTTGTTCGATGGACCACGC
GTCCTCGGGAGGACGGACTGGCAGGGGGGCGGGTATGGCATCCAACCAAA
ACAGTTCCGCGACAGGAGGGGAAACTTACATTTCTCTTCCCCCTTTTCCT
GTGTGCCGTGATGGTATGCAACGACAATATAGTAGAAGAGGTAAACTTCA
AGTGGAATGGGGAACCAAGGGTGAATCAAGACACATATCCCGGCGTTTGA
AACGTCGAATGACTGTATATGGGATGTATATGTGAAGAAAGTAACCGAAA
AGGGGAAGGTTGGGGTACAAAGATTGCGCCAGATCCTAGTCGACCCGCAT
CTTGATACCAACAATTTTGAAATGTGTTAATCATTTCGCCGTTAAAAAAC
GCAAGATAACAATGGACTGGAAGCCAGAAGGTGGTGAAGGAGTTGGAACT
AGTTCAGATGGAAGTAGGAAAGGTAATTCTAGGATATTCCCAGTGCACCA
ACAATGCAATAGTAGGGCAGAAGTTGGGTATTCACTCCCTGAAAACCGGA
AGAGGCGTAAGGAAGCTGAAGTGGCAGTGCAGGCTACACAACATGAAAGA
AAGGAGACCGCCACAAGAAAAGCAGATTGGAAATCAATTCAAAAGGGTAG
AAGGCCTGTTGAGTGAGATACTGTAGTAGAAAAAGCGATGAGATAGCTAG
AATTTTTTAAAGAGGAGAAGGTAAAGAGTGAGGGCATGGGTGGATTTAAG
GAGGACGGGCTGTAATTGCAGGCAAAGAAGAACAAGGATTGAGAAGAGAG
GGGGGCTGCGAGTAAGGAGGGTTTGGGAGCATGACAAAGACTGGATGAAG
AGATAGGGTTGAATGGGCGCACCTTCATGGACCATGAGACATTGGCACAC
AGTTGCAAGTCAATTTTGGGACGGGAGATCTTGACTTCAAGAAACGTAGG
TTCGTGGAATCAGTTACTCAGGAGTGGCGCATAAAAGTGTTTCCTTTGCG
TGTTTCCCCCCTCTAATGGACCCCCCGAACAACAAAACATAATAGAATGT
CATGCGCGTAACACTCTGTGACAGGTCGACGAAACCGATTTTTTCCACAT
GCTGACGCTGACGATCGGCAACAGCTTCTTCTTCAACGCCTCTTCATGGG
GAGACCCTCTGGAAAATGACGATACTACTTCCACTATTAGTGCAAGTTGG
CAAGAGCACTTACGGAACGCAACGAAATCCGCCGCCGCTGAAGTCGCGAG
TGAGCGAGAGGGGAGCAACGAGACGTGCTCAGATTGCGCGGAACAGGGAT
TAGCAGGACTGTCTTCCTGGAAGATCAGCGCCGCCGAGGTACGGTTTGGT
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig337:33880..36182+

>mRNA_H-paniculata_contig337.9007.1 ID=mRNA_H-paniculata_contig337.9007.1|Name=mRNA_H-paniculata_contig337.9007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig337:33880..36182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACATCAATCGCAGCGGAACCTATCTTGAGCAGATGTACATCAATCG
CAGCGGAACCTATCTTGAGCAGGTCGACGAAACCGATTTTTTCCACATGC
TGACGCTGACGATCGGCAACAGCTTCTTCTTCAACGCCTCTTCATGGGGA
GACCCTCTGGAAAATGACGATACTACTTCCACTATTAGTGCAAGTTGGCA
AGAGCACTTACGGAACGCAACGAAATCCGCCGCCGCTGAAGTCGCGAGTG
AGCGAGAGGGGAGCAACGAGACGTGCTCAGATTGCGCGGAACAGGGATTA
GCAGGACTGTCTTCCTGGAAGATCAGCGCCGCCGAGGTACGGTTTGGTTG
AGTCGACGAAACCGATTTTTTCCACATGCTGACGCTGACGATCGGCAACA
GCTTCTTCTTCAACGCCTCTTCATGGGGAGACCCTCTGGAAAATGACGAT
ACTACTTCCACTATTAGTGCAAGTTGGCAAGAGCACTTACGGAACGCAAC
GAAATCCGCCGCCGCTGAAGTCGCGAGTGAGCGAGAGGGGAGCAACGAGA
CGTGCTCAGATTGCGCGGAACAGGGATTAGCAGGACTGTCTTCCTGGAAG
ATCAGCGCCGCCGAGGTACGGTTTGGTTGA
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