mRNA_H-paniculata_contig100.9.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Match: A0A6H5KVW8_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW8_9PHAE) HSP 1 Score: 332 bits (851), Expect = 1.290e-91 Identity = 165/248 (66.53%), Postives = 195/248 (78.63%), Query Frame = 3
Query: 2205 GRDVGALNPTDSDAVVDTTQDPTDTIVTGFWRLFHGQEVHRPKAVLVIRHWALCALDRRSTRLMRKTVTMARALCINVGEILNDYSIYAMFHELLREAEAGQPVTPARNQPFEHRVEVPAYIQELSSNVAAVSMRMVVRGQSCFFHNEMCRKLFLSSEEANEMYSENKQDVWATCIHPEDHKTFFESLSLQLFHVPGHFSESTQILKCRDRVGVPFLALVHFRYEFQDGGNYAAFGLSMHPLPSSPYL 2948
GRD G +P + VD PT+ IV+GFW+LF +HRPKAVLVIRHWALCALDRRST LMR+TV+MARAL INV EILNDYSIYAMFHELLREAEAG + P H+ E P YIQE+SS AAVSMR+V+RGQS F HN++C +LFL++ EANEMY+ + QDVWATCIHP+DHK FF++LS+QLF PGH SE ++LKCRDR GV FLALVHFRYEF+D GN+AAFGLS+ PLP S Y+
Sbjct: 587 GRDSGGRSPGANGGSVD----PTEAIVSGFWKLFREHGIHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQ-ETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTHEANEMYACDNQDVWATCIHPDDHKAFFDNLSMQLFRTPGHQSEFKKVLKCRDRTGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYI 829
BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Match: D7FVP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP7_ECTSI) HSP 1 Score: 291 bits (744), Expect = 9.770e-78 Identity = 163/315 (51.75%), Postives = 196/315 (62.22%), Query Frame = 3
Query: 2253 DTTQDPTDTIVTGFWRLFHGQEVHRPKAVLVIRHWALCALDRRSTRLMRKTVTMARALCINVGEILNDYSIYAMFHELLREAEAGQPVTPARNQPFEHRVEVPAYIQELSSNVAAVSMRMVVRGQSCFFHNEMCRKLFLSSEEANEMYSENKQDVWATCIHPEDHKTFFESL---SLQLFHVPGHFSESTQI----------------------------------------------------LKCRDRVGVPFLALVHFRYEFQDGGNYAAFGLSMHPLPSSPYL-NIDAPRDVSVLHDNSH---AALPPPLP 3020
D + DPT+ IV+GFW+LF EVHRPKAVLVIRHWALCALDRRST LMR+TV+MARAL INV EILNDYSIYAMFHELLREAEAG + P H+ E P YIQE+SS AAVSMR+V+RGQS F HN++C +LFL+++EANEMY+ + QDVWATCIHP+DH+ L +L P ES ++ L+CRDR+GV FLALVHFRYEF+D GN+AAFGLS+ PLP S Y+ N++ P S H +S AA PP P
Sbjct: 550 DGSVDPTEAIVSGFWKLFREHEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQ-ETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTQEANEMYASDNQDVWATCIHPDDHQDLLRQLIDAALPYSWAPVRVQESVEVMQSAAVSHSERIRPLLVYPPYPAASAALRERTNALGVSTILFIVFLLRLPDHLQCRDRIGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQNVEQPLTASDGHGSSGGSTAASPPVQP 863
BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Match: A0A6H5KRC5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC5_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 4.250e-7 Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = -1
Query: 2565 GERLEESLVVLGVYARGPHILFVFRVHLIRLLRAQEQLSAHFIVEKAALPPHHHPHRHCSHVRRKLLDV 2771
GE L + G+ G L V VHL+RL+R QE+ +AH +V KAALPP H+PHRH RR LLDV
Sbjct: 638 GEELTFQRFLTGIGVLGLRYLVVAGVHLVRLVRGQEEAAAHVVVVKAALPPKHNPHRHGREHRRHLLDV 706 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig100.9.1 >prot_H-paniculata_contig100.9.1 ID=prot_H-paniculata_contig100.9.1|Name=mRNA_H-paniculata_contig100.9.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1258bp MDPSSRHQRHQGRLSSGGSKRNNELSAQPQQQQRPGPSQQQIKACGRQTDback to top mRNA from alignment at H-paniculata_contig100:2249..13128+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig100.9.1 ID=mRNA_H-paniculata_contig100.9.1|Name=mRNA_H-paniculata_contig100.9.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10880bp|location=Sequence derived from alignment at H-paniculata_contig100:2249..13128+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig100:2249..13128+ >mRNA_H-paniculata_contig100.9.1 ID=mRNA_H-paniculata_contig100.9.1|Name=mRNA_H-paniculata_contig100.9.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7548bp|location=Sequence derived from alignment at H-paniculata_contig100:2249..13128+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |