prot_H-paniculata_contig3354.8981.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3354.8981.1
Unique Nameprot_H-paniculata_contig3354.8981.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length348
Homology
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BLAST of mRNA_H-paniculata_contig3354.8981.1 vs. uniprot
Match: A0A6H5KE01_9PHAE (Retrotrans_gag domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE01_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.200e-27
Identity = 66/176 (37.50%), Postives = 100/176 (56.82%), Query Frame = 0 
Query:    8 LKTAAITVCPNDVRDIPHLTDDPALDVAAILERYRTVIGLKARAIDPNDTELADNLAFRHIRLICDGSVLALYHQLMDGTIDWKAAGMNAESPHKPGPFTPPASWEDVKAALFDILTPANAIELCALEITSIRQTNDESVSDYALRYHALLARLESVIARATKRSGIQHTAWIAFT 183
            L+ A +++   D+R +P LT D   +V  IL+ +RTV+GLKA A++  D+  AD +A +H+ L+  G VL L  Q++ G ID   A    E P + G F PP +W+ + + L D L PAN++E  A  + +  Q   ESVS YALR+  ++AR ++ + R   R     TAW   T
Sbjct:  170 LQAATVSISAADLRSVPKLTGDRTENVIEILKHFRTVVGLKAAAVN-TDSSFADGVALKHVALVGTGEVLTLIQQILSGQIDCSKASTFTE-PEEKGSFPPPTTWDAMCSVLLDSLLPANSVEEEAHNLATFVQGPQESVSSYALRFRTVMARFQAAVERDGSR-----TAWNCMT 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3354.8981.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KE01_9PHAE4.200e-2737.50Retrotrans_gag domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3354contigH-paniculata_contig3354:2278..3321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3354.8981.1mRNA_H-paniculata_contig3354.8981.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3354 2016..5747 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3354.8981.1 ID=prot_H-paniculata_contig3354.8981.1|Name=mRNA_H-paniculata_contig3354.8981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=348bp
MTRSLKQLKTAAITVCPNDVRDIPHLTDDPALDVAAILERYRTVIGLKAR
AIDPNDTELADNLAFRHIRLICDGSVLALYHQLMDGTIDWKAAGMNAESP
HKPGPFTPPASWEDVKAALFDILTPANAIELCALEITSIRQTNDESVSDY
ALRYHALLARLESVIARATKRSGIQHTAWIAFTVALWQHGLHPNLQVLQL
QDKPPLHLQQALDCARRHEAAGLSGNVSSLAWTLQPNMHAVAQLDRQVPR
GSRHVHRERGERDNRRGLKRTCGKRPAPSSPPPPECPSWRGSAGGVTKSR
EPCTFPGCRSPASHTTRNCFAKQRAARKRRQSKASDTGPTSRPTREG*
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