prot_H-paniculata_contig334.8953.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig334.8953.1
Unique Nameprot_H-paniculata_contig334.8953.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length268
Homology
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 4.410e-60
Identity = 118/215 (54.88%), Postives = 139/215 (64.65%), Query Frame = 0
Query:   16 RPRIHVVDGTAFVSDEESAAFLLSEHRIKATPIGVRPARNESPEETLPYVLSPQQTTLVLRRNLADVFL---GFTDENRLHCPIPAARIRFGDKDELFGQAAKLHESDVAGETLY------------WKYPETLQEARSMAVFEDLWERGVYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRVQQAVAKRAVIASPPL 215
            RP++HVVDG   V D  SAA LLSEHRI ATP+GVR ARN+SPE + P VLSP+Q TLVLRR LADVF        E   H           D D   G A +  +++V   T              W++PET    +S AVFEDLW +G+  A GSNY AD+VVY+GPPTE HSIAAV+VSRG N ELSPAE+SGF+RVQQAV KRAVIA+ PL
Sbjct:   18 RPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPRHSSASETGCHGHETLEERHSDDGD---GGAEEQEDANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPL 229          
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: W4H2H1_9STRA (tRNA-intron lyase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2H1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.890e-9
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0
Query:  142 VFEDLWERGVYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRVQQAVAKRAVIA 211
            VF+DLWE+G+Y+  GS +G D+++YD  P  TH+ A VLV+  P   +  + ++GF R+ +AV K  V+A
Sbjct:  139 VFQDLWEKGLYITSGSKFGGDFLIYDADPLTTHAKAIVLVAESPI--VCASALAGFCRLARAVKKSWVVA 206          
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.600e-6
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 0
Query:   16 RPRIHVVDGTAFVSDEESAAFLLSEHRIKATPIGVR 51
            RPR+HVVDG   V D  SAA LLSEHRI ATP+GVR
Sbjct:   14 RPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVR 49          
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: A0A7S1HPT4_9EUKA (tRNA-intron lyase n=1 Tax=Phaeocystis cordata TaxID=118079 RepID=A0A7S1HPT4_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 3.210e-6
Identity = 53/216 (24.54%), Postives = 85/216 (39.35%), Query Frame = 0
Query:   15 GRPRIHVVDGTAFVSDEESAAFLLSEHRIKATPIGVRPA-RNESPEETLPYVLSPQQTTLVLRRNLADV-----------------FLGFTDENRLHCPIPAARIRFGDKDELFGQAAKLHESDVAGETLYWKYPETLQEARSMAVFEDLWERGVYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRVQQAVAKRAVIAS 212
            G+ ++ ++ G   + D E  A L SEH I    +G  P  R ++    LP  + P+    +L + +A+V                 FL      + H   P           L G+   +  +   G  L         E + +A +  L  +G  +  G  +GA+Y+VYDG P ETH+    L +   +  L P +I   +RV     K   IAS
Sbjct:    5 GKIQVDILWGIGHIWDAEDVARLKSEHNIHGWAVGSCPDNRQQNDVHGLPVQIQPEAVAYLLEKGVAEVRSERGAAGEGPPELDADFLAQFKARKDHVEFP-----------LVGERPVVSVAGHGGTRLE-------VEPKKLAAYRSLMAKGYTITDGRKFGANYLVYDGSPKETHAFLT-LRAAARHKPLDPLKIIAAARVAHGARKFLTIAS 201          
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: K3WV19_GLOUD (tRNA-intron lyase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV19_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 5.960e-6
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query:  134 LQEARSMAVFEDLWERGVYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRVQQAVAKRAVIAS 212
            LQ  R + VF DLWE+G +VA GS + AD+++Y+  P+ TH+ A V+V        +  +I    RV + V K+   AS
Sbjct:    7 LQRIR-LRVFRDLWEKGYFVAFGSKFSADFLIYEDDPSRTHATALVIVKEY-GAAFACVDIVSHCRVAKMVKKQVFFAS 83          
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: A0A8K1FHQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHQ6_PYTOL)

HSP 1 Score: 54.7 bits (130), Expect = 1.540e-5
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 0
Query:  142 VFEDLWERGVYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRVQQAVAKRAVIAS 212
            VF DLW RG +VA GS +GAD+++Y G P   HSIA ++V           +I    R+ + V K+   AS
Sbjct:   85 VFADLWHRGYFVAFGSKFGADFLIYQGDPDSHHSIAMIMVKEW-TASFGSVDIVSHCRMAKMVKKQITWAS 154          
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Match: A0A6V7V8G2_9BILA (tRNA-intron lyase n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7V8G2_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 2.250e-5
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 0
Query:  131 PETLQEARSMAVFEDLWERGVYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRVQQAVAKRAVIA 211
            P+  +    + VF DLW +G Y+  G+ +G DY+ Y+ PP E HS+  V+ S   N  L+   +   SRV   V K+ ++A
Sbjct:  171 PQNAEYFIRLTVFRDLWRKGFYLLSGAKFGCDYLAYEKPPGEQHSLFMVICS-DVNKSLNLYNLIATSRVSTQVKKKILLA 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig334.8953.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE4.410e-6054.88tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
W4H2H1_9STRA3.890e-942.86tRNA-intron lyase n=2 Tax=Aphanomyces astaci TaxID... [more]
D8LBR0_ECTSI1.600e-672.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1HPT4_9EUKA3.210e-624.54tRNA-intron lyase n=1 Tax=Phaeocystis cordata TaxI... [more]
K3WV19_GLOUD5.960e-637.97tRNA-intron lyase n=1 Tax=Globisporangium ultimum ... [more]
A0A8K1FHQ6_PYTOL1.540e-539.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6V7V8G2_9BILA2.250e-534.57tRNA-intron lyase n=1 Tax=Meloidogyne enterolobii ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 137..216
e-value: 6.5E-14
score: 53.8
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 138..212
e-value: 4.4E-13
score: 49.1
NoneNo IPR availablePANTHERPTHR13070TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDcoord: 117..213
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 139..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig334contigH-paniculata_contig334:30659..35173 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig334.8953.1mRNA_H-paniculata_contig334.8953.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig334 30424..35782 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig334.8953.1 ID=prot_H-paniculata_contig334.8953.1|Name=mRNA_H-paniculata_contig334.8953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MAKDLRPGIPLPKHGRPRIHVVDGTAFVSDEESAAFLLSEHRIKATPIGV
RPARNESPEETLPYVLSPQQTTLVLRRNLADVFLGFTDENRLHCPIPAAR
IRFGDKDELFGQAAKLHESDVAGETLYWKYPETLQEARSMAVFEDLWERG
VYVAGGSNYGADYVVYDGPPTETHSIAAVLVSRGPNGELSPAEISGFSRV
QQAVAKRAVIASPPLPCPTRDGISTAGSTSEGFKHEHQGGKSPSEEVRGD
NIRYVTLQFDSVSGRTM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like
IPR036167tRNA_intron_Endo_cat-like_sf