mRNA_H-paniculata_contig11397.895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11397.895.1
Unique NamemRNA_H-paniculata_contig11397.895.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11397.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11397contigH-paniculata_contig11397:4643..5038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.9754224-CDS-H-paniculata_contig11397:4642..50381622928846.9754224-CDS-H-paniculata_contig11397:4642..5038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11397 4643..5038 -
1691480642.7756076-CDS-H-paniculata_contig11397:4642..50381691480642.7756076-CDS-H-paniculata_contig11397:4642..5038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11397 4643..5038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11397.895.1prot_H-paniculata_contig11397.895.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11397 4643..5038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11397.895.1

>prot_H-paniculata_contig11397.895.1 ID=prot_H-paniculata_contig11397.895.1|Name=mRNA_H-paniculata_contig11397.895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
ASLRQVTFGKAFRQAIEGMAWPASLLQLTFGEWFNQPIEGAVWPSSLQQL
MFGEWFNQPIEGVVWPVSLQVLTFGGDFEEPIEGVVWSESLQQLTFGKNF
NQPIERMAWTPSLQRLTFGADFNQPIMGMTWP
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mRNA from alignment at H-paniculata_contig11397:4643..5038-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11397.895.1 ID=mRNA_H-paniculata_contig11397.895.1|Name=mRNA_H-paniculata_contig11397.895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig11397:4643..5038- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCGCTGCGGCAGGTGACTTTCGGTAAGGCGTTCCGCCAGGCTATCGA
AGGAATGGCATGGCCTGCGTCGCTGCTGCAGCTGACGTTCGGCGAATGGT
TCAATCAACCCATCGAGGGCGCGGTGTGGCCTTCATCGCTGCAGCAGCTG
ATGTTCGGAGAATGGTTCAATCAGCCTATCGAGGGTGTGGTGTGGCCTGT
GTCGCTTCAGGTGTTGACGTTTGGTGGAGACTTTGAGGAGCCTATCGAAG
GGGTGGTATGGTCTGAATCGCTGCAGCAGCTGACATTTGGTAAGAACTTC
AACCAGCCTATTGAGAGGATGGCATGGACTCCGTCGTTGCAGCGGTTGAC
GTTCGGTGCGGACTTCAATCAGCCTATTATGGGTATGACGTGGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig11397:4643..5038-

>mRNA_H-paniculata_contig11397.895.1 ID=mRNA_H-paniculata_contig11397.895.1|Name=mRNA_H-paniculata_contig11397.895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig11397:4643..5038- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATCGCTGCGGCAGGTGACTTTCGGTAAGGCGTTCCGCCAGGCTATCGA
AGGAATGGCATGGCCTGCGTCGCTGCTGCAGCTGACGTTCGGCGAATGGT
TCAATCAACCCATCGAGGGCGCGGTGTGGCCTTCATCGCTGCAGCAGCTG
ATGTTCGGAGAATGGTTCAATCAGCCTATCGAGGGTGTGGTGTGGCCTGT
GTCGCTTCAGGTGTTGACGTTTGGTGGAGACTTTGAGGAGCCTATCGAAG
GGGTGGTATGGTCTGAATCGCTGCAGCAGCTGACATTTGGTAAGAACTTC
AACCAGCCTATTGAGAGGATGGCATGGACTCCGTCGTTGCAGCGGTTGAC
GTTCGGTGCGGACTTCAATCAGCCTATTATGGGTATGACGTGGCCTGCAT
CGCTGCGGCAGGTGACTTTCGGTAAGGCGTTCCGCCAGGCTATCGAAGGA
ATGGCATGGCCTGCGTCGCTGCTGCAGCTGACGTTCGGCGAATGGTTCAA
TCAACCCATCGAGGGCGCGGTGTGGCCTTCATCGCTGCAGCAGCTGATGT
TCGGAGAATGGTTCAATCAGCCTATCGAGGGTGTGGTGTGGCCTGTGTCG
CTTCAGGTGTTGACGTTTGGTGGAGACTTTGAGGAGCCTATCGAAGGGGT
GGTATGGTCTGAATCGCTGCAGCAGCTGACATTTGGTAAGAACTTCAACC
AGCCTATTGAGAGGATGGCATGGACTCCGTCGTTGCAGCGGTTGACGTTC
GGTGCGGACTTCAATCAGCCTATTATGGGTATGACGTGGCCT
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