mRNA_H-paniculata_contig11395.894.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11395.894.1
Unique NamemRNA_H-paniculata_contig11395.894.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A6H5JPG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPG3_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 1.360e-74
Identity = 134/232 (57.76%), Postives = 161/232 (69.40%), Query Frame = 3 
Query:   24 VVPLGGAGPGVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRPGANQINRYQVSIWAGSRCIFSKSYTMARRYEENLTLGAPVHTLLRLEMTN-SHHQVFEDVVSVGYNTGFYATLKWILAAPVALAAMPFWWLSQPGAVGRGSLP 716
            V P+GG G G+HLLAPS+DGHVYVIEGAT CVNKIDLGERV SMVLADDV GDGTLDLIVGTM+GEV+ALS N+PYHPLNAW+S  RG  NGF HG +QGV+FVG    Y  ++GR F + FEIVDR         +QV I+AG+  IF +       +   ++L AP   LLR+EMTN +   VFED V VGYNT F+  LKW+ A P+ LA++PF W  +     R  LP
Sbjct:  553 VAPIGGWGAGLHLLAPSDDGHVYVIEGATACVNKIDLGERVRSMVLADDVDGDGTLDLIVGTMSGEVVALSANVPYHPLNAWTSQVRGPTNGFTHGGYQGVFFVGAASDYGEMVGRHFALTFEIVDR--STRTATPFQVIIFAGTEEIFRRDNMYEGTHVATVSLEAPRRVLLRIEMTNMAQRLVFEDHVFVGYNTKFHVALKWMTAMPMVLASLPFLWPDRGFRGTRRGLP 782
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: L1I970_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I970_GUITC)

HSP 1 Score: 153 bits (387), Expect = 1.680e-36
Identity = 86/220 (39.09%), Postives = 124/220 (56.36%), Query Frame = 3 
Query:   57 HLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRP----GANQINRYQVSI-WAGSRCIFSKSYTMARRYEENLTL-GAPVHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAPVALAAMPFWWLSQPGAV 698
            H++ PS DG +Y++ GATGC  K+D+GE   SMVLADD+ G+G +DL+V TM G V+ L T++ YHP+ AW+S  +G  N  +    QG++ +     +    G      FEIVD+RP    GA+    Y V I   GS  +F K+YT   RY E +        T + +EMTN + Q FED VS+ +N  FY  LKW+L  P  L ++   ++ +   V
Sbjct:  986 HIIVPSHDGFLYIVNGATGCSFKVDVGENSYSMVLADDITGNGKMDLLVTTMNGNVICLGTDVDYHPMKAWTSKEQGNNNVELRDGRQGIFILDRFRHFHDHNGPSMTFGFEIVDKRPVKGLGASG-GEYHVRISLGGSTKLFEKTYTHPGRYLEEIPCPDRRQFTSVFVEMTNEYGQHFEDRVSMSFNMHFYRALKWLLMVPFTLMSLGIVFIKEVNTV 1204
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A7S0M462_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M462_9CRYP)

HSP 1 Score: 146 bits (369), Expect = 2.760e-35
Identity = 86/218 (39.45%), Postives = 120/218 (55.05%), Query Frame = 3 
Query:    9 SKDSGVVPLGGAG-PGVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRPGANQINRYQVSIWAG-SRCIFSKSYTMARRYEENLTLGAP-VHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAPVA 653
            +++SG    G AG P   ++ P  DGH+Y+++G TGC  K DLGE   +MVLADDV G+G +DLIV TM G V  L T++ YHPL AW+S   G  N  +    QGVY       +    G    +E  +VD+RP       Y+V +  G S  +F+K+YT    Y E +   A   ++ + +EMTN   Q FED  ++ +N  FY  LKW+L  P A
Sbjct:  263 TRNSGA---GSAGLPTRSIVVPCNDGHLYIVDGLTGCTFKTDLGENSYTMVLADDVTGNGKMDLIVSTMNGRVACLGTDIDYHPLLAWTSRELGNNNVELRDGRQGVYVTDRFRHHRDNSGATMLLELAVVDQRPARPTPGTYRVRVSVGGSATLFTKTYTAPGVYLEEMPCPARRQYSTVFVEMTNELGQHFEDQAAMSFNMHFYRALKWVLVVPFA 477
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A7S4C7U7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C7U7_9EUGL)

HSP 1 Score: 149 bits (375), Expect = 5.300e-35
Identity = 82/210 (39.05%), Postives = 120/210 (57.14%), Query Frame = 3 
Query:   51 GVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGK-YEHIIGREFPVEFEIVDRRPGANQI--NRYQVSIWAGSRC-IFSKSYTMARRYEENL-TLGAPVHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAPVALAAM 665
            G+H++  S DGH+Y+I+G + C++KID GE   SMVLADD+ G+G +DLIV TM G V  L+T   +HPL  W+S  +G LNGF          + P  + +  ++G  F V FEIVD+R    +    +Y V I  G    I SK+Y  A RY E + T    + + L + M N + Q +ED + + +N  FY T+KW++  P  L A+
Sbjct:  701 GLHIVVMSHDGHMYIIDGKSACIDKIDFGENSYSMVLADDLSGNGYMDLIVSTMNGNVYLLNTETKFHPLKTWTSQTQG-LNGFTAKEGYVGIMISPESRVHRDVVGDHFKVMFEIVDKRKHQRRDFHQKYHVKITVGRGVPILSKTYYRASRYVEIVRTPTERMQSTLYITMRNEYSQYYEDSMPISFNMQFYNTIKWLVLIPFGLLAV 909
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A7S0VW01_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VW01_9CRYP)

HSP 1 Score: 147 bits (370), Expect = 5.640e-35
Identity = 82/210 (39.05%), Postives = 121/210 (57.62%), Query Frame = 3 
Query:   57 HLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRP----GANQINRYQVSIWAGSRCIF-SKSYTMARRYEENLTLGAP-VHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAP-VALAAM 665
            H++ P+ DG +YVI G TGC  K D+GE+  +MVLADDV G+G +DL+V TM G VL L T++ YHP+ AW++  +G  N  +    QG++       +   +G    +EFEIVD+RP    G+    RY V +  G   +   K+YT   RY E L   A   ++ + ++M N   Q FED V++ +N  FY  +KW+L  P VA+A +
Sbjct:  360 HVVVPAHDGFLYVINGKTGCTFKYDVGEKSYAMVLADDVTGNGLMDLVVATMNGNVLCLGTDVEYHPMKAWTAREQGNNNVELRDGRQGIFVTEAFRHHGDKVGATMMLEFEIVDKRPVKGFGSGS-GRYSVKVSIGGNAVLLQKTYTRPGRYLEELPCPARRQYSTVYVQMINELGQHFEDRVAMSFNMRFYRAMKWVLVLPFVAMAGV 568
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A7S1EHG6_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHG6_HEMAN)

HSP 1 Score: 147 bits (371), Expect = 7.920e-35
Identity = 82/210 (39.05%), Postives = 122/210 (58.10%), Query Frame = 3 
Query:   57 HLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRP----GANQINRYQVSIWAGSRCIF-SKSYTMARRYEENLTLGAP-VHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAP-VALAAM 665
            H++ P+ DG +YVI+G TGC  K D+GE+  +MVLADDV G+G +DL+V TM G V+AL T++ YHP+ AW+S  +G  N  +    QG++       +   +G    +EFEIVD+RP    GA     Y V +  G   +   K+YT   +Y E L   A   ++ + ++M N   Q FED V++ +N  FY  +KW+L  P VA+A +
Sbjct:  439 HVVVPAHDGFLYVIDGKTGCTFKYDVGEKSYAMVLADDVTGNGFMDLLVSTMNGNVIALGTDVQYHPMKAWTSREQGNNNVELRDGRQGIFVTEGYRHHGDKVGATMMLEFEIVDKRPVKGFGAGS-GTYSVKVSIGGNAVLLQKTYTRPGKYLEELPCPARRQYSTIYVQMVNELGQHFEDRVAMSFNMRFYRAMKWVLVLPFVAMAGV 647
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A7S1VDI4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VDI4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.180e-34
Identity = 85/236 (36.02%), Postives = 129/236 (54.66%), Query Frame = 3 
Query:    9 SKDSGVVPLGGAGPGVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLAL-STNLPYHPLNAWSS-PARGYLNGFVHG--NFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRPGANQIN-----RYQVSIWAGS---RCIFSKSYTMARRYEENLTLG-APVHTLLRLEMTNSHHQVFEDVVSVGYNTGF---YATLKWILAAPVALAAMP 668
            + ++G  P GG+ PG+H++ P    +VYVIE  +GC+  I +GE V +M+ ADDV G   +DL+V T++G ++ L S  +PYHPLN W++   RG  N F  G    QG++      +Y  + G   PV FEI D RPG ++       RY+V I  G+   R +F + YT    Y E L +   P    L + +  +H   +EDV  +GYN  +   ++TL W+   P+ LA +P
Sbjct:  302 TSEAGSHPQGGSAPGLHIVQPIGS-NVYVIEAGSGCIQSISIGEEVTAMIQADDVHGTNNIDLVVSTISGNIITLDSPGVPYHPLNVWNTGKVRGRRNNFAQGFTASQGIFVHDVSRRYRDVFGVYVPVTFEIFDNRPGISEAENSDKRRYKVEIRDGTSIKRALFRREYTETGVYTERLYISYGPGFYTLTIVLKTTHSIYYEDVFHIGYNVHYMDGFSTLLWL---PLVLATIP 533
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A2P6NLJ8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NLJ8_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 8.700e-34
Identity = 78/201 (38.81%), Postives = 113/201 (56.22%), Query Frame = 3 
Query:   51 GVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRPGANQINRYQVSIWAGSRCIFSKSYTMARRYEENLTLGAP-VHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAPV 650
            G+HL+  ++DG++Y+I G T CV  +DLGE    MVLA+D+ G+G +DL+V T +G V  LST  PYHPL  W S  +G        N QG++  G       I    F V+FEIVD+RP   +   Y+V I  G+  +F + Y  A  Y E +T     + T++ +EMTN + Q F D  SV ++  FY  +K+ L  P+
Sbjct:  571 GLHLVTLAQDGNLYIIHGRTSCVYTLDLGESSRCMVLAEDITGNGKMDLVVTTRSGRVYLLSTTAPYHPLKPWVSYNQGRNGYTARENLQGIFVRGQNRDTRDISRESFSVQFEIVDKRPKHLRPPVYRVKILYGNHLLFKREYKSAGFYTEVMTSPLERMSTMIYIEMTNEYGQAFFDSFSVTFHKHFYRIIKYALVVPM 771
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A0M0J8Q3_9EUKA (Defective in exine formation protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8Q3_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 1.870e-32
Identity = 83/221 (37.56%), Postives = 124/221 (56.11%), Query Frame = 3 
Query:   33 LGGAGPGVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVG-PRGKY--EHIIGREFPVEFEIVD-RRPGANQINRYQVSIWAGSRCIFSKSYTMARRY------EENLTLGAPVHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAPVALAAM 665
            +GGA   +HL+  S DGHVYV+   +GC +++DLGE   + VLADD+ G+G LDL+V TM G +    T+ P+ PL AW S A+G         FQGV   G P G++    + G  FP+E E+ D RR    +++R +V +  G   + +++Y +          EE  +   P   LL ++MTN H Q FEDV+S+  N GF + LK++   P+A A +
Sbjct: 1144 VGGADSELHLVFSSFDGHVYVVNARSGCYDRLDLGEDSYTQVLADDLTGNGMLDLLVSTMNGHLFCFETDTPWTPLRAWRSQAQGRNVFQPREGFQGVVISGVPSGRHAPRAVTGVRFPLEIELHDARRVPGTRVHRLEVRL--GRELLLNRTYELREGTQLLVVREELPSPAQPFEGLLTVQMTNEHGQYFEDVISMSVNAGFESILKYVTLLPLAAATI 1362
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BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Match: A0A0S4JVN8_BODSA (Membrane-associated protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JVN8_BODSA)

HSP 1 Score: 139 bits (349), Expect = 1.190e-31
Identity = 78/211 (36.97%), Postives = 121/211 (57.35%), Query Frame = 3 
Query:   51 GVHLLAPSEDGHVYVIEGATGCVNKIDLGERVLSMVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGFVHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRPGANQI--NRYQVSIWAGSRCI-FSKSYTMARRYEENLTLGAP---VHTLLRLEMTNSHHQVFEDVVSVGYNTGFYATLKWILAAPVALAAM 665
            G+H++ PS DGH+Y+I G TGC  +ID+GE+  SMVLADD+  +G LDL+V T++G VLA ST+ P+HPL  W S  +    G       GV+      +   I G  F +   IVD RP +++    RY +++  G+R I F   +  A+ Y   L L +P   V+  +R+ ++  + Q FED+V++ +N  F  T+K++L  P  L  +
Sbjct:  629 GLHIIVPSHDGHLYIISGPTGCYERIDIGEKSSSMVLADDLTNNGMLDLVVSTLSGSVLAYSTDTPFHPLKQWGSRIKALNGGTASEGHIGVFIAPESRQPRDIRGDRFQLLVTIVDSRPNSHRSFNPRYVLTVLIGTRVIVFQGIFFEAKSYA--LELHSPLERVYANVRVVLSLENGQHFEDMVALSFNMHFLETIKFLLLGPFLLVVL 837
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11395.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPG3_9PHAE1.360e-7457.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1I970_GUITC1.680e-3639.09Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0M462_9CRYP2.760e-3539.45Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S4C7U7_9EUGL5.300e-3539.05Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0VW01_9CRYP5.640e-3539.05Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1EHG6_HEMAN7.920e-3539.05Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
A0A7S1VDI4_9STRA6.180e-3436.02Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A2P6NLJ8_9EUKA8.700e-3438.81Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A0M0J8Q3_9EUKA1.870e-3237.56Defective in exine formation protein n=1 Tax=Chrys... [more]
A0A0S4JVN8_BODSA1.190e-3136.97Membrane-associated protein, putative n=1 Tax=Bodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11395contigH-paniculata_contig11395:720..7141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue4.9e-46
Seed eggNOG ortholog2880.D7FJ73
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010584,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0022607,GO:0030198,GO:0032501,GO:0032502,GO:0032989,GO:0043062,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046872,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0071840,GO:0085029
EggNOG OGs2CMU7@1,2QRZ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1350
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11395.894.1prot_H-paniculata_contig11395.894.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11395 1348..6989 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.8243787-UTR-H-paniculata_contig11395:719..13471622928846.8243787-UTR-H-paniculata_contig11395:719..1347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11395 720..1347 -
1691480642.7241082-UTR-H-paniculata_contig11395:719..13471691480642.7241082-UTR-H-paniculata_contig11395:719..1347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11395 720..1347 -
1622928846.8915668-UTR-H-paniculata_contig11395:6989..71411622928846.8915668-UTR-H-paniculata_contig11395:6989..7141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11395 6990..7141 -
1691480642.7677183-UTR-H-paniculata_contig11395:6989..71411691480642.7677183-UTR-H-paniculata_contig11395:6989..7141Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11395 6990..7141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.8380222-CDS-H-paniculata_contig11395:1347..16321622928846.8380222-CDS-H-paniculata_contig11395:1347..1632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 1348..1632 -
1691480642.7339761-CDS-H-paniculata_contig11395:1347..16321691480642.7339761-CDS-H-paniculata_contig11395:1347..1632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 1348..1632 -
1622928846.8528266-CDS-H-paniculata_contig11395:3260..33771622928846.8528266-CDS-H-paniculata_contig11395:3260..3377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 3261..3377 -
1691480642.741548-CDS-H-paniculata_contig11395:3260..33771691480642.741548-CDS-H-paniculata_contig11395:3260..3377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 3261..3377 -
1622928846.8622508-CDS-H-paniculata_contig11395:4701..48001622928846.8622508-CDS-H-paniculata_contig11395:4701..4800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 4702..4800 -
1691480642.7519479-CDS-H-paniculata_contig11395:4701..48001691480642.7519479-CDS-H-paniculata_contig11395:4701..4800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 4702..4800 -
1622928846.8752542-CDS-H-paniculata_contig11395:6920..69891622928846.8752542-CDS-H-paniculata_contig11395:6920..6989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 6921..6989 -
1691480642.7600238-CDS-H-paniculata_contig11395:6920..69891691480642.7600238-CDS-H-paniculata_contig11395:6920..6989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11395 6921..6989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11395.894.1

>prot_H-paniculata_contig11395.894.1 ID=prot_H-paniculata_contig11395.894.1|Name=mRNA_H-paniculata_contig11395.894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MVLADDVKGDGTLDLIVGTMTGEVLALSTNLPYHPLNAWSSPARGYLNGF
VHGNFQGVYFVGPRGKYEHIIGREFPVEFEIVDRRPGANQINRYQVSIWA
GSRCIFSKSYTMARRYEENLTLGAPVHTLLRLEMTNSHHQVFEDVVSVGY
NTGFYATLKWILAAPVALAAMPFWWLSQPGAVGRGSLPS*
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mRNA from alignment at H-paniculata_contig11395:720..7141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11395.894.1 ID=mRNA_H-paniculata_contig11395.894.1|Name=mRNA_H-paniculata_contig11395.894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6422bp|location=Sequence derived from alignment at H-paniculata_contig11395:720..7141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCTACAGCAAGGATAGCGGAGTAGTGCCGTTAGGCGGAGCTGGGCCA
GGTGTTCATCTGTTGGCTCCGTCGGAGGACGGGCACGTGTACGTCATCGA
AGGTGCCACTGGGTGCGTGAACAAGATCGACCTCGGCGAGAGGGTTCTGA
GCATGGTACTGGCCGATGACGTAAAAGGAGATGGAACTCTAGATCTCATC
GTGGGCACCATGACAGGAGAGGTGAGGAGACAGGGAGTGCCAAAGGCGGT
ACAGCTAACAGAGTTCCGATGGTATTGTTTCGCCGATTACGTGGCTGACA
GGTATTTGAAATAGACAGCACCCCTAACGCTGTTGTTGTTGTTGGTGGTT
GTGGTGGTGGTAATTGTTGTTGTTGTTGGTGCTTGTTATGTTGCCAGTTG
ATCAATGCGAGAAGGTGATCACTGTCGGCATCGTCGTTATTCCGGAACAG
CTTTCAAGTTTTTATTCGAGAAACTGGTGTGATGAAAAGTAATTTCGACA
AATGAATCCTACATGCGGGCGTAGCGAGCCACCCCAAACGCAGTGCCCCG
TTGTGCGTGGGGTCATGGAACGTTTATGGACGTATGCCTACATGCGAGGG
CAGGGAGCCACTGTTGTATTTGGATCGTAGATTGTCCAACCTGTTAAAAA
ATCCTTTTCTGAGAACATGATCTTTTCAGGAGAGAGTGATTCTCGAGGGA
ACACCACCTGCTCTGCTTGTTAGTTCGAAATCTTGGGGTGTTGTGCTGAT
GTATGCGGACCGTGCCCTTGGAATCTGTTCTATCGTGAATGAACTGGTCA
TCCAGAATCCGAAGCAGCTAGAAAAGATAATCCGACCATGTGACTAAACG
CCACTGGTTGTTGTGTAGAGGAACCAGGGTTGAGGAACGTCAGGAATCGC
AGGAACGTGCTGTCCACATTTTGTAGAATTTGATATAATGAAAGGCAGCA
GGACCCTTCTTTTTCTTCATATTTTTTCTTTTTTTCCACCGGTTTGAAAC
CATGTCCCGTTAATCTAGATCCATACAAAAGCTGACACTCCTGGGCGCAC
ACAAGCAGTGTTTGAACAGAACAAAGTACTCTGCAAAATTCGATTTGGTC
CTATACAGCTAACAGTGAGTATTCATCGCAGACTCCGTCCAGATCCCCGG
TTCATCCACAAAAACGCTTCGTTACGAAAATAATTCATTTTCAAATTTCG
TGTATACCGTGAGAGATACAAACAGCTGCTGAGTGTGGCGAGGAACTCGT
TTTGTGCAAACACTCAAAAAGAAGCATTGACATCATCACTGGAGACGTGA
AATTGACCTTGATCCAAGATTTTGACCTGGAAAAATCCCAGCTCCTCCTG
AATATTACTGTTTTCCCGGCGTTGGGTGCCCTTCAATTACGACACCTGCA
GCCGGTATAGTGGATACCTACATCCCTTCTTGCCGCAATATCTAAAGACT
CCGCCACAGGTGAGGCACGGCCTTTTTGCCACTTGATTGCTGTGGGGAAC
GCGGTTTGTCTGGCAAGCAAATCACCGCTTGTTTTTTATTTTTGAGAATA
ACACGTGCCGGGTAAAGAAGCGTAGCCCCAACTCTCATCCTTACCCCTCC
TCTTCCAATCGTCTCAATAACTCTTTTGCGGGGTAAACTTGGAGCCTGGC
GTCGTGTGATATTCAGCCTAAACACGCTCGGGCAAACATTGCACCCCCCA
GACAAAAACGAATGGAGCATTCGCAACTATCTCGAACTATCATTATTTGT
CTTGGGTAGACACGTATTTATTCGTTTACAAGTCCATGAATGGTCACTCT
ACAGATGGTCACCAGGTGGTCGTATACCCGGCGAACGGTCACACGTGCAG
GTCCTGTTTGTTTTCCCGATGGTACTGTACAGATTGAATACCCTATCTAC
CCGAGCTTTTCGATGCTCCATGGGATATCGAGTACACCACATATTATTTT
CGGCTCATGGATGTCTTCCCCAACTCAAACAGATACAGTATTCATTCCAG
ATTTCTCGTATTTATTCGTGTCTTGTATTCGTATTTGTCCAGGGCGTGAA
ACAATGTGTATCCGACAAAAGACAAAAGGGGTGGAGGGGGTATTCGGGCA
GGTGTAGTGCTAAACCAAGCATAGCACAAACGTAGCTATACAATTTGAGC
CACACTGAGGTAAAATGTTATTTTTTCGAGACCACGTTTTGGAAACAGCA
CATCGAATCCGATTACTTCCAGGACAATCGGATTAATACACACAAGTTCG
CTGCCGAAGACGGAAATATTTCTTGTGTGGTCGTGTCACGGTGCCCTTCC
GAATTCGTTTGGCTTGCCCGTTCCTTGGCTATACTCTGTAGGTGTTGGCG
CTGTCGACGAACCTGCCGTATCATCCGCTGAACGCTTGGAGCTCCCCCGC
ACGAGGATATCTTAACGGGTTCGTGCACGGCAACTTTCAGGTAAACATGT
AGCGTAAAGAATGTACGGATCCTGCCGAATTGTGTTAAGTATTCGGTCCG
ATTTTCGACGAATTTTGCCAGATTTTCCGGTCCGGTTCTCGCTCAATTGT
GTCTGACCTCCGATCCAGTTCTCGCCGATTTTTGTCTTGAGATCGGGTCG
GGTCTTGCCATTTTTTATTTTCGAAATATCCAAGCTGGCTTTCGATGATT
TTGTCAGATATTCGGTCGGTTCTCGCTTACTTTTGGCAAATGGTTGACAC
AATTCTTCGCGACTTTTGGAAAGATATACAAGCAGGGCTTCTGGAGGTCG
CAACTGTTTCAATCGCGTCGCGTTCACGTCCTGCACATTTTGGTCTTACA
ACGGTGGGATTCTGGAATTTTCGGGTCGACATTTCTTGATCACGGTGACC
ATTTTCGGGTCGATGGGTTGTGTGTTTCAGTGTAATCCGCAACGCTGACG
TTCTTGTTTCTATCGGTCAAGCCTTTTTCGTGAAGGCGGTCCCAATCGAC
GCACGACTATAGTGGCGTTTGTTTTTTGTTTTTGTTTTTGGTTTTTGTTT
TATGTCATCTGTAAAGTCTCGCTGGCTACAAGAAGCAAAAGATGGTTCTA
GTGGGAGAACTCTTGGCAATGAAAGGTCACAATTGTTTTCGCCGCTGGAG
TCTGCTTGACTAGAGACAACGTTACATGAACAAAGTTCCTTCATCAGGAA
GTGAGATTCTTTTGTCTTTGAGGCGCCATCACGACGATACCTTTTTAGCT
ATTCCGCAGCTCTGGGGTATCGCTGCATTATCTCAGGCGTTGCTTGTTAT
GAATCGCTGCACCACGGGGAAAAGCCCCACGCTGGACCACCTTCAACGTA
CCCGCAGGGAGAATCTGTATACCGCACTTGTCAGTCTCTATGGAGTACTA
TTTTGAAATTGATTTTTCTTGAGAAACAAGACCCTTTTCTGCAGGAAGCA
CGCTTCCGTCTTTTGAACAAAACATACATCGTAAATATTTTCCAACAGCC
TAACTTTCGGTGTTACAAGCTCACTTGTTGTCTTCTACACGAATATATGT
GATGAGGGGCTTCCTCTATGGTTGACCAAGAGATGAACAGAAATTTCTCG
CAATATTCAAGAAACTCGAGATTGAATATGCGTCATCAGCTGAGGCTGGT
AAGCCCTATGCACTATGTTTTCTCCCGTCGCATGGTGTTTCCACGACGCG
TTCAGTTGAGTTGATCTTGGTAAAAGATGATACAGTCGTTGAAGCACACG
AAGTAGGTGGCTTCAACGTATCTTCTTCAACCATGATTTTTCCCTCCCTC
GTGTCTTGGTTCAGGGTGTGTACTTCGTGGGGCCTAGGGGGAAATATGAG
CACATCATCGGGCGAGAATTCCCCGTGGAATTCGAGATCGTGGACCGGCG
ACCAGGAGCGAATCAGATCAATCGGTATCAGGTAACAAACAAATGTGGAA
TAAACTGCTCTCTGCGTAGGATGAATTTCATTACGTCGTGTGCGGCGGTC
GTTCAGTGGCTCGTTAGCGAATCTCGGCAAAATGAAATGAGTCTTGGCTC
AGTCCAGCAACATGTGTGGATGGCACTACAAAGGGACCTCGCAGGTTCAT
TAAACCCGGTGCACATGTATGATGATTGCTCGAACCGAAGAGCCTCGAGT
TTTGTTCTCCGCCACGTGTGACCGTGGAGCTCCTCTACAACTACGAAATT
GCACCTTGTGCACGTAAACTCGGATATGTCGTATTTTCGTTTGTACCCGG
AATAGTATCGTCATTCTACCTTTGTCCCATAAATTTTGGCTTACGATGGT
TGGTGTTTTGTAAATACATTTTTCAATTTTGGACTTCGTGAAGAATAAAG
CATATCATTCGAAAGCCTACATGTTCACCTTGCATGCGGATATCTTCAAG
ATGTTTTTTTACGAGAGCCGGGTATCTCAACATTTTTTTTTTTTTTTGAA
ATGGAAGATGTTACAAAAATAGCATAATAGGCCGAAATCGGCTGATGATC
ATGGTCAATGGATAGTGAAGTTTCAAGGAGACCGCCGATTAAGAAATGGC
TCGTTTCGTTGTATCCCTTGACGTTTCATACTACGTAGTGCAGTAAATTT
ATTGTTCGTTTTTGTCATCCTCCAATTCAATCCACTAATTGAAGGCAGCA
TCATGAGCGGCTCTGTCAATCGGAACCATATGGTCCAAAAGCCCCTCACG
CTGCCTTTTCCTGCTCCCCGTATGCCCAATGTCTAAATCGGTTTCCCCCA
GCGCTTTCAACACTTGGTTGTACGGCATGAAGAGGCTCTGCCAAATCAAC
TCTAGACTATCCGCGTCATATTAGCCGTACATGCTCTCAACGACCTCTAC
AGGTGCATCTAACGAACGGTAGCGCTCCCTCCACACTCTAGACTTCAGGG
ATGCGAAAACCCCAAATCTTTGATTTTGAGATCGGGAGACTGCGCTGGCT
ACGTTAGGAAATTCATGTTCCATCCATCCTCCTTCCCTGCAAGGTTTAGC
TTCCTTTGCTTGCCCTTGCCCATGTGCAGGCTCACGCCGTCCTACTGCAC
AAGCACTTCCTCTCCAACTATGGCACCTTTTCCTTGAGTGTGGAGGGGAA
AACCTCCATGTCTCCAAAATAGGAATTCTCGTACATGGATATTTTATTAA
AAATCTTCGAGAAATCCATTTTTGGAAGCAGAGCGAAAAATATTGTTGTA
AGACCAAATCCGTCAGCTTGGTATGATTGAGGGGCTTCGTTCGCGCTATT
GCTCGTTTGGAAACTCCATGTACATTTGAAGAACTGGCTCGCGAAACAAT
GGAAAACCATGATTTTCAGCCGATATGGGCCTATTCGGCTGTTTTCGCAA
AATCCGTCATTTCCGAAAAAGAACAGATGTGTTGAGATACTCGGTTTTCA
ACCATTTTGAATTTAATTGATTTTTTCATGAACCCCAAAATGGCATTTTG
TTTTGAAAATATCGCTATGAGTCCGACAGAGACCCAAGGAAATAACGAAA
CGTCGGAGCAGGGGCTGATTTATCCATTCACACTCTTCGAAATGGTCGAA
ACCCTGCAGGTCTCTATATGGGCAGGGTCGCGATGCATCTTCAGCAAGTC
CTACACAATGGCACGAAGATATGAGGAAAACCTCACACTAGGAGCGCCGG
TGCACACGCTGCTTCGACTAGAAATGACCAACTCCCATCATCAAGTGTTC
GAGGACGTGGTTAGCGTCGGCTACAACACGGGATTTTATGCCACTTTGAA
GTGGATACTGGCGGCTCCCGTCGCGCTGGCAGCGATGCCGTTTTGGTGGT
TAAGTCAACCGGGTGCTGTCGGTCGAGGGTCCTTGCCGTCTTGAGGACGT
TTCCAAGGGGAAAAAACAGCACCTTGTGGAAAAGTGCAGCGTCTATCCAT
GCGTGCTGTATCCTAATAGCGGTGGATATCGTCTTGTAATTATTTGGTGT
GGCATGTGTTTGTCAGAGTGGTTGATCTACCTTATCCGTCGAGAGGAACC
AACCTGCGGCAGCCGAGCCCCCACTAGATTTGCCGCAAGAAACATGGGAT
ACAATTGCATGTTGTGGGCTACTACTGGCTAGTGTGGTAATTCGTTTTCA
CTGAGACCTTCCGGCCCCTAATAGTTTTGGGCAAGCAAGATGTAACTACT
TGCGAACTGAATAACCCAGGATCGGTCAGAATCCCCTCCGAATTCCCCCC
GCGTTCCTGGCAGCCCCCGTTTTTTTTTGTCTGTTTTTTGGTGGATGAAA
ATTCCGCTTTTATTGTGAAAACACACGAATTTATTTGTTGTCGTGTTTTA
TGGCTTTAGAAGAAAAGAACTACATACGGCAGGGTTCTCGATACCAAGCC
CGAAGGAGTTTCATTTTGCGCTTTCAGTTCATCTCAGGCGTTGAATATCA
GCACAAATCACCTGGAATGGAGTTGTTACACTCGGCTGAGGTCGGCGGCC
ATTCACCTCAAAGCAGTTAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig11395:720..7141-

>mRNA_H-paniculata_contig11395.894.1 ID=mRNA_H-paniculata_contig11395.894.1|Name=mRNA_H-paniculata_contig11395.894.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig11395:720..7141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACTGGCCGATGACGTAAAAGGAGATGGAACTCTAGATCTCATCGT
GGGCACCATGACAGGAGAGATGGTACTGGCCGATGACGTAAAAGGAGATG
GAACTCTAGATCTCATCGTGGGCACCATGACAGGAGAGGTGTTGGCGCTG
TCGACGAACCTGCCGTATCATCCGCTGAACGCTTGGAGCTCCCCCGCACG
AGGATATCTTAACGGGTTCGTGCACGGCAACTTTCAGGTGTTGGCGCTGT
CGACGAACCTGCCGTATCATCCGCTGAACGCTTGGAGCTCCCCCGCACGA
GGATATCTTAACGGGTTCGTGCACGGCAACTTTCAGGGTGTGTACTTCGT
GGGGCCTAGGGGGAAATATGAGCACATCATCGGGCGAGAATTCCCCGTGG
AATTCGAGATCGTGGACCGGCGACCAGGAGCGAATCAGATCAATCGGTAT
CAGGGTGTGTACTTCGTGGGGCCTAGGGGGAAATATGAGCACATCATCGG
GCGAGAATTCCCCGTGGAATTCGAGATCGTGGACCGGCGACCAGGAGCGA
ATCAGATCAATCGGTATCAGGTCTCTATATGGGCAGGGTCGCGATGCATC
TTCAGCAAGTCCTACACAATGGCACGAAGATATGAGGAAAACCTCACACT
AGGAGCGCCGGTGCACACGCTGCTTCGACTAGAAATGACCAACTCCCATC
ATCAAGTGTTCGAGGACGTGGTTAGCGTCGGCTACAACACGGGATTTTAT
GCCACTTTGAAGTGGATACTGGCGGCTCCCGTCGCGCTGGCAGCGATGCC
GTTTTGGTGGTTAAGTCAACCGGGTGCTGTCGGTCGAGGGTCCTTGCCGT
CTTGAGTCTCTATATGGGCAGGGTCGCGATGCATCTTCAGCAAGTCCTAC
ACAATGGCACGAAGATATGAGGAAAACCTCACACTAGGAGCGCCGGTGCA
CACGCTGCTTCGACTAGAAATGACCAACTCCCATCATCAAGTGTTCGAGG
ACGTGGTTAGCGTCGGCTACAACACGGGATTTTATGCCACTTTGAAGTGG
ATACTGGCGGCTCCCGTCGCGCTGGCAGCGATGCCGTTTTGGTGGTTAAG
TCAACCGGGTGCTGTCGGTCGAGGGTCCTTGCCGTCTTGA
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