prot_H-paniculata_contig3330.8924.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3330.8924.1
Unique Nameprot_H-paniculata_contig3330.8924.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
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BLAST of mRNA_H-paniculata_contig3330.8924.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.590e-15
Identity = 68/146 (46.58%), Postives = 76/146 (52.05%), Query Frame = 0 
Query:   46 DGSADNEVMAILSSP--GKKFVVKPLPRPGGVAQAPATLGPPSPRSNGHAAH---------------AAAGLALPSAGVADYLGEGSGHGHGGVVGLGPGGDLAGVGNAGAGGDSGVSPPRTPGLPKSSSASWDPHSQSSSSAFSV 174
            D SAD EVMAILSSP   KKFVVKP PRPGG         P SP +NG+AA                A AGL     G  + +             +G G     +G   A G +  SPP+TPGLPK SSASWDPH QSSSSAFSV
Sbjct:   13 DASADKEVMAILSSPVQQKKFVVKPQPRPGGAI-------PASPAANGNAAFVPPASATTLGGDRRDATAGLPRVRCGAVEAV-------------VGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSV 138
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BLAST of mRNA_H-paniculata_contig3330.8924.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.690e-7
Identity = 64/144 (44.44%), Postives = 68/144 (47.22%), Query Frame = 0 
Query:   46 DGSADNEVMAILSSPG--KKFVVKPLPRPGGVAQAPATLGPPSPRSNGHAAHAAAGLALPSAGVADYLGEGSGHGHGGVVGLGPGGDLAGVGNAGAGGDSGVSPPRTP-------------GLPKSSSASWDPHSQSSSSAFSV 174
            D SAD EVMAILSSP   KKFVVKP PRPGG         P SP +NG+AA       +P + VA  LG              PGG    V     GG                       GLPK SSASWDPH QSSSSAFSV
Sbjct:   13 DASADKEVMAILSSPAQQKKFVVKPQPRPGGAF-------PASPAANGNAAF------VPPSSVA-ALGSDLRD----TTAALPGGRCGAVEAVVGGGXXXXXXXXXXXXXXXXXXXXXXXGLPKPSSASWDPHVQSSSSAFSV 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3330.8924.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNA0_9PHAE5.590e-1546.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN70_ECTSI1.690e-744.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 20..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3330contigH-paniculata_contig3330:7188..7709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3330.8924.1mRNA_H-paniculata_contig3330.8924.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3330 5366..7709 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3330.8924.1 ID=prot_H-paniculata_contig3330.8924.1|Name=mRNA_H-paniculata_contig3330.8924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MLPGPGEREQGTAAAAAAAAAAAAAQMMQHKQRQQQQQQQQQSVDDGSAD
NEVMAILSSPGKKFVVKPLPRPGGVAQAPATLGPPSPRSNGHAAHAAAGL
ALPSAGVADYLGEGSGHGHGGVVGLGPGGDLAGVGNAGAGGDSGVSPPRT
PGLPKSSSASWDPHSQSSSSAFSV
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