mRNA_H-paniculata_contig11391.892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11391.892.1
Unique NamemRNA_H-paniculata_contig11391.892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11391.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11391contigH-paniculata_contig11391:6048..6482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size190
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11391.892.1prot_H-paniculata_contig11391.892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11391 6048..6478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.249606-CDS-H-paniculata_contig11391:6047..61401622928846.249606-CDS-H-paniculata_contig11391:6047..6140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11391 6048..6140 -
1691480642.6442518-CDS-H-paniculata_contig11391:6047..61401691480642.6442518-CDS-H-paniculata_contig11391:6047..6140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11391 6048..6140 -
1622928846.2655752-CDS-H-paniculata_contig11391:6385..64781622928846.2655752-CDS-H-paniculata_contig11391:6385..6478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11391 6386..6478 -
1691480642.6545472-CDS-H-paniculata_contig11391:6385..64781691480642.6545472-CDS-H-paniculata_contig11391:6385..6478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11391 6386..6478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928846.2832658-UTR-H-paniculata_contig11391:6478..64821622928846.2832658-UTR-H-paniculata_contig11391:6478..6482Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11391 6479..6482 -
1691480642.6639545-UTR-H-paniculata_contig11391:6478..64821691480642.6639545-UTR-H-paniculata_contig11391:6478..6482Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11391 6479..6482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11391.892.1

>prot_H-paniculata_contig11391.892.1 ID=prot_H-paniculata_contig11391.892.1|Name=mRNA_H-paniculata_contig11391.892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MTGHKNAERGKYVGFTLNQVFGDGIEEEFGGRALCSMREAALLIQADCDQ
ASRPADLCCGTK
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mRNA from alignment at H-paniculata_contig11391:6048..6482-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11391.892.1 ID=mRNA_H-paniculata_contig11391.892.1|Name=mRNA_H-paniculata_contig11391.892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig11391:6048..6482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGATGACCGGGCACAAGAACGCAGAACGCGGGAAGTACGTAGGGTTCA
CTCTAAACCAAGTGTTCGGCGACGGGATCGAGGAGGAGTTCGGAGGGGTA
AGGATGTTGTTTTTTATGTTTCAATAACCCTCTCACAGGCTAGCATGGCG
TATTTGCAAGCGCGTCTGAAACATTTTTCTCGTGATTTTGCAAACGACTG
CAAGGGCATATATTTGAAGAGGCTACTTGCTTGATGATGGCCCCACACCA
CCATCAGCTACTTGTCCACCTCTCCTACTAATCAGAAGTATCTGTTAACC
TTGGCGCCCACGCGAAATCACTGATGCTAACGCTTGCTACAGAGGGCCCT
GTGCAGCATGAGGGAGGCTGCTCTCCTCATCCAAGCGGATTGTGACCAAG
CCTCTCGCCCTGCCGACCTTTGTTGCGGAACGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11391:6048..6482-

>mRNA_H-paniculata_contig11391.892.1 ID=mRNA_H-paniculata_contig11391.892.1|Name=mRNA_H-paniculata_contig11391.892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig11391:6048..6482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGGGCACAAGAACGCAGAACGCGGGAAGTACGTAGGGTTCACTCT
AAACCAAGTGTTCGGCGACGGGATCGAGGAGGAGTTCGGAGGGATGACCG
GGCACAAGAACGCAGAACGCGGGAAGTACGTAGGGTTCACTCTAAACCAA
GTGTTCGGCGACGGGATCGAGGAGGAGTTCGGAGGGAGGGCCCTGTGCAG
CATGAGGGAGGCTGCTCTCCTCATCCAAGCGGATTGTGACCAAGCCTCTC
GCCCTGCCGACCTTTGTTGCGGAACGAAGAGGGCCCTGTGCAGCATGAGG
GAGGCTGCTCTCCTCATCCAAGCGGATTGTGACCAAGCCTCTCGCCCTGC
CGACCTTTGTTGCGGAACGAAG
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