mRNA_H-paniculata_contig333.8917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig333.8917.1
Unique NamemRNA_H-paniculata_contig333.8917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: D8LJX0_ECTSI (MutS protein homolog 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX0_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.160e-30
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGVETLPTGLVQAVQNVKTITCTTEE 252
            +ECFAVR DVDGMLDV+R TFLQSM+DI++ AD M+EE  YQVKV+ S SRGYHL+IPAGV+ LP GL+QAVQN KTI CTTEE
Sbjct:  361 EECFAVRADVDGMLDVARTTFLQSMEDIYRAADAMTEEHSYQVKVSCSVSRGYHLIIPAGVD-LPPGLIQAVQNTKTIACTTEE 443          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A6H5JUC5_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.110e-23
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   37 MLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGVETLPTGLVQAVQNVKTITCTTEE 252
            MLDV+R TFLQSM+DI+Q AD M+EE  YQVKV+ S SRGYHL+IPAGV+ LP GL+QAVQN KTI CTTEE
Sbjct:    1 MLDVARTTFLQSMEDIYQAADAMTEEHGYQVKVSCSVSRGYHLIIPAGVD-LPPGLIQAVQNTKTIACTTEE 71          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A482S255_9ARCH (MutS_IV domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S255_9ARCH)

HSP 1 Score: 90.5 bits (223), Expect = 3.740e-20
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGV---ETLPTGLVQAVQNVKTITCTTEE 252
            +ECFA++P +DG+LDV+RKTFLQ+M++I   A+T S   +  VKV +S SRGY+LVIPA     ETLP   +QAV N ++I+CTT E
Sbjct:  135 EECFAIKPGIDGLLDVARKTFLQTMEEIHGMAETYSRHVELDVKVAYSTSRGYYLVIPATSSTSETLPDIFIQAVLNRRSISCTTYE 221          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A836CNW6_9STRA (Muts protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.290e-18
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEEC-DYQVKVTFSASRGYHLVIPAGVETLPTGLVQAVQNVKTITCTTEE 252
            QECFAV+PD++GMLDV+RKTFLQS++DI+  AD  ++E  +    V  +A+RGYHL +P  V  LP   +QAV++ K I+CTTE+
Sbjct:  426 QECFAVQPDINGMLDVARKTFLQSVEDIYALADAYTQEYREAPCSVRATAARGYHLQVPGDVPELPEMYIQAVKSSKFISCTTEQ 510          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A0P1B012_PLAHL (Dna mismatch repair protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B012_PLAHL)

HSP 1 Score: 78.6 bits (192), Expect = 4.020e-15
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGVETLPTGLVQAVQNVKTITCTTE 249
            QECFAVR  VDGMLDV+R+T+L +++ I +   T  E   + +++ ++A RGYHL +P  ++ LP+  ++ V N   I C+T+
Sbjct:  390 QECFAVRAGVDGMLDVARRTYLDTIEKIHEVVHTYKENIGFPIRLNYTARRGYHLAVPVNIKELPSSFIERVTNRNVICCSTK 472          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: K0TKE2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TKE2_THAOC)

HSP 1 Score: 77.0 bits (188), Expect = 1.400e-14
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPA---GVE-TLPTGLVQAVQNVKTITCTTEE 252
            QECFA++P+ DGM+DV RK FL ++DDI++ AD  +E  D  V+V  +++RGY+L I +   GV+  LP   +Q V+N K I CTTEE
Sbjct:  587 QECFALKPNTDGMMDVLRKAFLANVDDIYRLADEYAETYDMNVQVKETSARGYYLSISSADLGVDLALPDVFIQPVKNGKLIHCTTEE 674          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: B8BUC4_THAPS (DNA mismatch repair mutS protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUC4_THAPS)

HSP 1 Score: 74.3 bits (181), Expect = 1.220e-13
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPA--GVETLPTGLVQAVQNVKTITCTTEE 252
            QECFA++P+ DGM+DV RK FL ++DDI++ AD  +E  D  V V  + +RGY+L + A  G++ LP   +Q V+N + I CTTEE
Sbjct:  249 QECFALKPNTDGMMDVLRKAFLANVDDIYRLADEYAEAYDITVSVKETTARGYYLSVSADLGLD-LPQIFIQPVKNGRFIHCTTEE 333          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A8K1CR11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR11_PYTOL)

HSP 1 Score: 73.9 bits (180), Expect = 1.690e-13
Identity = 34/84 (40.48%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGVETLPTGLVQAVQNVKTITCTTEE 252
            QECFAVR  +DGMLDV+R+T+L +++ I +         +  V++++S+ RGYHLV+P   + +P+ +V+ V   K I C+T+E
Sbjct:  389 QECFAVRAGIDGMLDVARRTYLDTIEKIHELVHKFKGSMEVPVRLSYSSRRGYHLVLPCNAKDIPSLIVERVPTKKAIYCSTKE 472          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A7S2UIN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIN1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.040e-13
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGVET-LPTGLVQAVQNVKTITCTTEE 252
            QECFA++P+ DGM+DV RK FL ++DDI++ AD  +E     V V  + +RGY+L IP  + T +P   +Q V+  + I CTTEE
Sbjct:  254 QECFALKPNTDGMMDVLRKAFLANVDDIYKLADEYAETYGLPVSVKETTTRGYYLSIPTDMGTDMPDVFIQPVKRGRFIHCTTEE 338          
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Match: A0A425CM83_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CM83_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.280e-13
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSASRGYHLVIPAGVETLPTGLVQAVQNVKTITCTTE 249
            QECFAVR  VDGMLDV+R+T+L +++ I +   T  E     +++T+++ RGYHL +P   + LP   ++ V     I C+T+
Sbjct:  261 QECFAVRAGVDGMLDVARRTYLDTIEKIHEVIHTYKENLGIPIRLTYTSRRGYHLAVPINTKDLPASFIERVSMKTVICCSTK 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig333.8917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJX0_ECTSI1.160e-3073.81MutS protein homolog 4 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JUC5_9PHAE1.110e-2373.61DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A482S255_9ARCH3.740e-2054.02MutS_IV domain-containing protein n=1 Tax=archaeon... [more]
A0A836CNW6_9STRA2.290e-1852.94Muts protein 4 n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A0P1B012_PLAHL4.020e-1540.96Dna mismatch repair protein n=1 Tax=Plasmopara hal... [more]
K0TKE2_THAOC1.400e-1448.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BUC4_THAPS1.220e-1347.67DNA mismatch repair mutS protein (Fragment) n=1 Ta... [more]
A0A8K1CR11_PYTOL1.690e-1340.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2UIN1_9STRA3.040e-1345.88Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A425CM83_9STRA4.280e-1339.76DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig333contigH-paniculata_contig333:570..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog2880.D8LJX0
Preferred nameMSH4
KEGG koko:K08740
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030054,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0055044,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0220@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.8758435-CDS-H-paniculata_contig333:569..7011622930027.8758435-CDS-H-paniculata_contig333:569..701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 570..701 +
1691481116.418045-CDS-H-paniculata_contig333:569..7011691481116.418045-CDS-H-paniculata_contig333:569..701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 570..701 +
1622930027.8870544-CDS-H-paniculata_contig333:1457..15801622930027.8870544-CDS-H-paniculata_contig333:1457..1580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 1458..1580 +
1691481116.4376664-CDS-H-paniculata_contig333:1457..15801691481116.4376664-CDS-H-paniculata_contig333:1457..1580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig333 1458..1580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig333.8917.1prot_H-paniculata_contig333.8917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig333 570..1580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig333.8917.1

>prot_H-paniculata_contig333.8917.1 ID=prot_H-paniculata_contig333.8917.1|Name=mRNA_H-paniculata_contig333.8917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
QECFAVRPDVDGMLDVSRKTFLQSMDDIFQTADTMSEECDYQVKVTFSAS
RGYHLVIPAGVETLPTGLVQAVQNVKTITCTTEEA
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mRNA from alignment at H-paniculata_contig333:570..1582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig333.8917.1 ID=mRNA_H-paniculata_contig333.8917.1|Name=mRNA_H-paniculata_contig333.8917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1013bp|location=Sequence derived from alignment at H-paniculata_contig333:570..1582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGTGCTTCGCCGTTCGCCCAGATGTCGACGGCATGCTGGATGTATC TCGCAAGACATTTCTCCAGAGCATGGACGACATTTTCCAAACAGCCGACA CTATGAGCGAGGAGTGTGACTATCAGGTTAAGGTGACTGGTTCGATCGAT TTCTGTGGGTTGTTCGTGAGAGCGGGCCATAAAAATTAATATCGGCGATG TAATTTCGAAAGCGCTACAGTAGTTCGCAAACATCTGTTGTTACTACAAC GTGACCCCTCCCCGACCTCGGCAAAAGTTTCTACTGCAGCGAAACAGTCC GTGAAGTGGTACACCAACAATCATGTGCTACTTCGCAGGAAACGGTTCGC GTGAAATTGGGCTAGAGGGGATACTGGAGTTTATTTTTTTCTCTGAAAAA CGACGATCTAATACTTTGCGGGGGGGCGGGCGATCCTTGTGCGGTACTCT AATCATACGGTATTGGTTACACCATGACTGTTTGTTGTACGCTACAACAT AATAATTGTGCGGTGGAGCCTCCTCTTTGACCAGCGGGAATTGACCAAGT GATAATCTACGATCATGATAGAAATAAAAAGGGCTTACTATAGGATGTCC TTGCGCACGTAAGACGCTTGGGATGTGCAATGCCGGCGAAAAAACGAGCA TTACGAAATACTAACGTGGGCTCTACCAAAAAGCAAGCATTCACGAGGCA AAAAAACGAGAGTCAGCGCCAATATTATTGCTAAAAAGTAGTCATGTTGC CCTAGATGGTCAACATAATTAAACTGTTTCTTGGTGAAAATCATAAGTTG TTGACTTCGTCCAAGGGGTTACTACGCAATATTTAGCATTTTATGTACAC TATCGCCTACTGTTTACTGTACTTCGTAACTCGACAAGGTGACCTTTTCA GCTTCCCGAGGATACCACCTCGTCATCCCCGCCGGGGTGGAGACTCTCCC TACGGGACTGGTACAGGCCGTGCAGAATGTCAAGACCATTACGTGCACCA CTGAAGAGGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig333:570..1582+

>mRNA_H-paniculata_contig333.8917.1 ID=mRNA_H-paniculata_contig333.8917.1|Name=mRNA_H-paniculata_contig333.8917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig333:570..1582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGTGCTTCGCCGTTCGCCCAGATGTCGACGGCATGCTGGATGTATC
TCGCAAGACATTTCTCCAGAGCATGGACGACATTTTCCAAACAGCCGACA
CTATGAGCGAGGAGTGTGACTATCAGGTTAAGCAGGAGTGCTTCGCCGTT
CGCCCAGATGTCGACGGCATGCTGGATGTATCTCGCAAGACATTTCTCCA
GAGCATGGACGACATTTTCCAAACAGCCGACACTATGAGCGAGGAGTGTG
ACTATCAGGTTAAGGTGACCTTTTCAGCTTCCCGAGGATACCACCTCGTC
ATCCCCGCCGGGGTGGAGACTCTCCCTACGGGACTGGTACAGGCCGTGCA
GAATGTCAAGACCATTACGTGCACCACTGAAGAGGCAGTGACCTTTTCAG
CTTCCCGAGGATACCACCTCGTCATCCCCGCCGGGGTGGAGACTCTCCCT
ACGGGACTGGTACAGGCCGTGCAGAATGTCAAGACCATTACGTGCACCAC
TGAAGAGGCA
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