mRNA_H-paniculata_contig33108.8888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33108.8888.1
Unique NamemRNA_H-paniculata_contig33108.8888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A6H5K880_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K880_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.320e-23
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:   28 QVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQAS 180
            +VA TIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPT+GLD+FQAS
Sbjct:  102 KVASTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTTGLDAFQAS 152
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BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: D8LKI7_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.570e-21
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   28 QVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            +VA TIVGDEKTRGISGGEKKRLS+ CQLFGTPSLIFCDEPT+GLD+FQA
Sbjct:  156 KVASTIVGDEKTRGISGGEKKRLSMGCQLFGTPSLIFCDEPTTGLDAFQA 205
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BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A8J4B572_9CHLO (ABC transporter domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B572_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 3.140e-19
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   28 QVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            +VA T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPT+GLDSFQA
Sbjct:  203 KVADTRVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 252
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BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A8J4DGJ1_9CHLO (ABC transporter domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DGJ1_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 7.950e-19
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   28 QVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            + A T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPT+GLDSFQA
Sbjct:  203 KAAATRVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 252
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BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A8J4C8S2_9CHLO (ABC transporter domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C8S2_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 1.430e-18
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   28 QVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            + A T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPT+GLDSFQA
Sbjct:   96 KAAATRVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 145
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BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A8J4C3V9_9CHLO (ABC transporter domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3V9_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 1.490e-18
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   28 QVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            + A T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPT+GLDSFQA
Sbjct:  203 KAAATRVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 252
[Close]
BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A835WFU1_9CHLO (ABC transporter domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WFU1_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 2.040e-18
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   40 TIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPT+GLDSFQA
Sbjct:  205 TCVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 250
[Close]
BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A2K3D6G1_CHLRE (ABC transporter domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D6G1_CHLRE)

HSP 1 Score: 86.7 bits (213), Expect = 2.040e-18
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   40 TIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            T VGDEKTRG+SGGEKKRLSI C+L G+PSLIFCDEPT+GLDSFQA
Sbjct:  205 TCVGDEKTRGLSGGEKKRLSIGCELVGSPSLIFCDEPTTGLDSFQA 250
[Close]
BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A7S0WCZ7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WCZ7_9CRYP)

HSP 1 Score: 84.0 bits (206), Expect = 2.490e-18
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   22 SLQ-VAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            SLQ  AHTIVG  K RGISGGEKKRLSIAC+L G+P L+F DEPTSGLDSFQA
Sbjct:   34 SLQKAAHTIVGGGKVRGISGGEKKRLSIACELLGSPELLFLDEPTSGLDSFQA 86
[Close]
BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Match: A0A7R9U5Z0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Z0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.090e-18
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   25 LQVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEPTSGLDSFQA 177
            L  A T VGDEKTRGISGGEKKRLSIAC+L   P+++FCDEPTSGLDSFQA
Sbjct:  166 LPSADTPVGDEKTRGISGGEKKRLSIACELLSDPNVLFCDEPTSGLDSFQA 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33108.8888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K880_9PHAE3.320e-2392.16ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LKI7_ECTSI1.570e-2188.00White-brown-complex ABC transporter family (Partia... [more]
A0A8J4B572_9CHLO3.140e-1982.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8J4DGJ1_9CHLO7.950e-1980.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8J4C8S2_9CHLO1.430e-1880.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8J4C3V9_9CHLO1.490e-1880.00ABC transporter domain-containing protein n=2 Tax=... [more]
A0A835WFU1_9CHLO2.040e-1884.78ABC transporter domain-containing protein n=1 Tax=... [more]
A0A2K3D6G1_CHLRE2.040e-1884.78ABC transporter domain-containing protein n=3 Tax=... [more]
A0A7S0WCZ7_9CRYP2.490e-1879.25Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7R9U5Z0_9STRA7.090e-1878.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33108contigH-paniculata_contig33108:249..428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D8LKI7
KEGG koko:K21396
KEGG TC3.A.1.204
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0031967,GO:0031975,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size182
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.652307-CDS-H-paniculata_contig33108:248..4281622930024.652307-CDS-H-paniculata_contig33108:248..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33108 249..428 +
1691481115.149279-CDS-H-paniculata_contig33108:248..4281691481115.149279-CDS-H-paniculata_contig33108:248..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33108 249..428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33108.8888.1prot_H-paniculata_contig33108.8888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33108 249..428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33108.8888.1

>prot_H-paniculata_contig33108.8888.1 ID=prot_H-paniculata_contig33108.8888.1|Name=mRNA_H-paniculata_contig33108.8888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MRCFLFHSLQVAHTIVGDEKTRGISGGEKKRLSIACQLFGTPSLIFCDEP
TSGLDSFQAS
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mRNA from alignment at H-paniculata_contig33108:249..428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33108.8888.1 ID=mRNA_H-paniculata_contig33108.8888.1|Name=mRNA_H-paniculata_contig33108.8888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig33108:249..428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTGTTTCTTGTTTCATTCCCTGCAGGTGGCACATACGATCGTGGG
AGATGAAAAAACTAGGGGCATATCGGGTGGGGAAAAGAAGAGGCTGTCGA
TCGCCTGCCAGCTCTTTGGAACTCCCTCGCTGATCTTCTGCGACGAGCCT
ACAAGCGGGCTCGATTCTTTCCAGGCAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig33108:249..428+

>mRNA_H-paniculata_contig33108.8888.1 ID=mRNA_H-paniculata_contig33108.8888.1|Name=mRNA_H-paniculata_contig33108.8888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig33108:249..428+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTGTTTCTTGTTTCATTCCCTGCAGGTGGCACATACGATCGTGGG
AGATGAAAAAACTAGGGGCATATCGGGTGGGGAAAAGAAGAGGCTGTCGA
TCGCCTGCCAGCTCTTTGGAACTCCCTCGCTGATCTTCTGCGACGAGCCT
ACAAGCGGGCTCGATTCTTTCCAGGCAAGCATGCGGTGTTTCTTGTTTCA
TTCCCTGCAGGTGGCACATACGATCGTGGGAGATGAAAAAACTAGGGGCA
TATCGGGTGGGGAAAAGAAGAGGCTGTCGATCGCCTGCCAGCTCTTTGGA
ACTCCCTCGCTGATCTTCTGCGACGAGCCTACAAGCGGGCTCGATTCTTT
CCAGGCAAGC
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