mRNA_H-paniculata_contig11387.888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11387.888.1
Unique NamemRNA_H-paniculata_contig11387.888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11387.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11387contigH-paniculata_contig11387:2594..3064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928845.6230752-UTR-H-paniculata_contig11387:2593..26231622928845.6230752-UTR-H-paniculata_contig11387:2593..2623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11387 2594..2623 +
1691480642.4253058-UTR-H-paniculata_contig11387:2593..26231691480642.4253058-UTR-H-paniculata_contig11387:2593..2623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11387 2594..2623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928845.6341903-CDS-H-paniculata_contig11387:2623..30641622928845.6341903-CDS-H-paniculata_contig11387:2623..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11387 2624..3064 +
1691480642.4362354-CDS-H-paniculata_contig11387:2623..30641691480642.4362354-CDS-H-paniculata_contig11387:2623..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11387 2624..3064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11387.888.1prot_H-paniculata_contig11387.888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11387 2624..3064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11387.888.1

>prot_H-paniculata_contig11387.888.1 ID=prot_H-paniculata_contig11387.888.1|Name=mRNA_H-paniculata_contig11387.888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MTACDSPRLRTLYGAQCCAVILPKTLITKRPAGRLFPVVSLPGSTVKNKR
CFLSYLFGCNSSEPLKTKRLHTTHDPPILNNAHTHTNHYPDSLSSTPPMF
PCIILKSQAYMRTCTRVPNSGTVLSHHQIRLLSDEPSQTNIATCERR
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mRNA from alignment at H-paniculata_contig11387:2594..3064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11387.888.1 ID=mRNA_H-paniculata_contig11387.888.1|Name=mRNA_H-paniculata_contig11387.888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig11387:2594..3064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAAAACTGCGACTAACGATGACTTAGATATGACAGCATGTGACTCACC
GCGACTAAGGACACTGTACGGTGCACAATGCTGCGCGGTGATTCTCCCAA
AGACGCTCATAACCAAGAGACCGGCAGGCAGATTGTTTCCGGTTGTTTCT
CTCCCCGGTTCAACCGTGAAAAACAAGAGGTGTTTTCTTTCATACCTTTT
TGGGTGCAATAGTTCCGAACCTCTAAAAACCAAGCGATTGCATACCACAC
ACGACCCACCCATCCTTAACAACGCACACACCCATACCAACCACTATCCA
GATTCTCTCTCGTCGACACCACCAATGTTTCCTTGTATCATACTGAAATC
ACAGGCGTACATGCGTACGTGCACGCGGGTCCCTAACAGTGGCACCGTTC
TCTCTCATCATCAGATTCGATTACTATCAGACGAACCTTCACAGACAAAT
ATCGCAACTTGCGAACGTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig11387:2594..3064+

>mRNA_H-paniculata_contig11387.888.1 ID=mRNA_H-paniculata_contig11387.888.1|Name=mRNA_H-paniculata_contig11387.888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig11387:2594..3064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGCATGTGACTCACCGCGACTAAGGACACTGTACGGTGCACAATG
CTGCGCGGTGATTCTCCCAAAGACGCTCATAACCAAGAGACCGGCAGGCA
GATTGTTTCCGGTTGTTTCTCTCCCCGGTTCAACCGTGAAAAACAAGAGG
TGTTTTCTTTCATACCTTTTTGGGTGCAATAGTTCCGAACCTCTAAAAAC
CAAGCGATTGCATACCACACACGACCCACCCATCCTTAACAACGCACACA
CCCATACCAACCACTATCCAGATTCTCTCTCGTCGACACCACCAATGTTT
CCTTGTATCATACTGAAATCACAGGCGTACATGCGTACGTGCACGCGGGT
CCCTAACAGTGGCACCGTTCTCTCTCATCATCAGATTCGATTACTATCAG
ACGAACCTTCACAGACAAATATCGCAACTTGCGAACGTCGCATGACAGCA
TGTGACTCACCGCGACTAAGGACACTGTACGGTGCACAATGCTGCGCGGT
GATTCTCCCAAAGACGCTCATAACCAAGAGACCGGCAGGCAGATTGTTTC
CGGTTGTTTCTCTCCCCGGTTCAACCGTGAAAAACAAGAGGTGTTTTCTT
TCATACCTTTTTGGGTGCAATAGTTCCGAACCTCTAAAAACCAAGCGATT
GCATACCACACACGACCCACCCATCCTTAACAACGCACACACCCATACCA
ACCACTATCCAGATTCTCTCTCGTCGACACCACCAATGTTTCCTTGTATC
ATACTGAAATCACAGGCGTACATGCGTACGTGCACGCGGGTCCCTAACAG
TGGCACCGTTCTCTCTCATCATCAGATTCGATTACTATCAGACGAACCTT
CACAGACAAATATCGCAACTTGCGAACGTCGC
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