mRNA_H-paniculata_contig11384.885.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: A0A6H5KKX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX4_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.220e-64 Identity = 182/469 (38.81%), Postives = 225/469 (47.97%), Query Frame = 1
Query: 1 RFGVRGLVHKNPYMALLKDYVECFFPHGSGAGC-----MDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARV------TSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSP-----RPVPRHGRAHAGHDGXXXXXXGAEGRRGASTFWRGGIGVGGMLXXXXMLTAWVGSG---HGNPQSSGGLSHRRSVSGIGGASARNGARE-----YRPDPWSAWVLENYSLYSTLLVAFVRKTMDMSLKV---PCARDT---GSGGNDLA---AEVPSLLTGTGRANLDLLWRISEAFCDDVTTLILRCQTSAAGPA 1308
R GV GL H NPYM LLKDY+E FFPH GA GM ELFLRVLVEFWLEGN VL PG KE +G N H P + T DP A + +EY PPTDM++HGLL+ SAHLL+DP+L +AC R T +A+ + G TF + S +TPALE+LRPHVF FLR AFS +++ S F+L VELW+LWMRPWA+ SIL G SP +P A +G A RG+S GG+ ++ A V + +SGG + G GASA GAR Y DPW WVLENYSLY+T+L AFVRK MS KV P R G G N A++ ++ T ANL LL R+ + F V +L+ Q + A
Sbjct: 319 RHGVIGLTHLNPYMTLLKDYLEAFFPHCGGASIGGXXXXXXXTGMSLQGELFLRVLVEFWLEGNTVLRPGVLKEQEXXXXXXXXXAWGNSNNL----------------------HFPAPRT-TSNYDPSVALLHSEYTPPTDMSVHGLLITSAHLLADPKLKEACRRNLDLTGGTPAASALARTGE-----------TFSER---ERSALTPALEVLRPHVFGFLRVAFSADNTMHLSSAGFSLAVELWMLWMRPWAAASILRGHSPDSLNTSDLPSSASAQSGRASPSC----AGSARGSSDQ------GGGLAPWVSVVVAVVKDFVQIEPSRANSGGGRQTGTSGGESGASAA-GARGREVGGYSYDPWGVWVLENYSLYTTVLAAFVRKVGSMSFKVNDGPGHRGYHHHGGGANGQGNPQAQMAAMFADTRGANLRLLHRVVDVFSPAVASLLASAQVAVGRKA 739
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: D7FGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU8_ECTSI) HSP 1 Score: 176 bits (446), Expect = 4.650e-44 Identity = 156/453 (34.44%), Postives = 189/453 (41.72%), Query Frame = 1
Query: 1 RFGVRGLVHKNPYMALLKDYVECFFPHGSGAGC-----MDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSPRPV-----PRHGRAHAGH--DGXXXXXXGAEGRRGASTFWRGGIGVGGMLXXXXMLTAWVGSGHGNPQSSGGLSHRRSVSGIGGASARNGARE---YRPDPWSAWVLENYSLYSTLLVAFVRKTMDMSLKVPCA------RDTGSGGN---DLAAEVPSLLTGTGRANLDLLWRISEAFCDDVTTLILRCQ 1287
R GV GL H NPY+ LLKDY+E FFPH GAG GM EL LRVLVEFWLEGN VL PG KE Q DP PT + RL +AC R + GG G+ G S +TPALE+LRPHVF FLR AFS +++ S F+L VELW+LWMRPWA+ SIL G SP + P A +G G+ + G W G+ V + + + SG G + R SG A AR RE Y DPW AWVLENYSLY+T+L AFVRK MS K G G N +L AE+ ++ T ANL LL R+ + F V +L+ Q
Sbjct: 212 RHGVIGLTHLNPYLTLLKDYLEAFFPHRGGAGIGGLXXXXXXTGMSLQGELLLRVLVEFWLEGNTVLRPGVLKEA--------------------------------------------------QTDPTY---------PTRV----------------RLKEACRR------NLDLTGGMPAAPARTGEGSSE----GERSALTPALEVLRPHVFGFLRVAFSADNTMHLSSAGFSLAVELWVLWMRPWAAASILRGHSPDSLNTSDFPSSASAQSGQACPSSTGGTRGSANQGGGLAPWISGV-VASVKNFVQIEPSRANSGGGRQTGT-----SRGGSGASAAGARG--REVGGYSYDPWGAWVLENYSLYTTVLAAFVRKVGSMSFKENDGSGHRGYHHHGGGANGQGNLQAEMATMFADTRGANLRLLHRVVDVFSPAVASLLASAQ 571
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: K3WKR0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKR0_GLOUD) HSP 1 Score: 83.2 bits (204), Expect = 3.820e-13 Identity = 73/257 (28.40%), Postives = 105/257 (40.86%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTA-EIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPA--QGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRS 768
G L NPY LL Y+ F P S A A + ++ LFL +L+EFWL N ++ F E A+ D+L+ GL +RG A PT P A Y P+D L LL+ HL+SDP A VT +A + + G +P+ G G G +T ++ ++R ++ F R FS A I T F ++WL +++PW EG S
Sbjct: 319 GFASLTKGNPYNVLLLQYLRAFLPETSAAASSRYHAKVLQHANLFLHILIEFWLRQNLIV---FSDEPAQTAGDSLN-----------------------GLATAMRG----ASTPTKLASPFAAVHTYTSYMAPSDDLLSSLLLTIIHLMSDP-FYPAALVVTPTAGSTPSKNG-----------FYPSLVAGTGGGGYLTTSVSVMRRPLYEFFRLVFSRAP-IGLSPTAFLAITDVWLAYIQPWCCRRWSEGTS 532
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: A0A7S2RLA6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA6_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 9.700e-9 Identity = 76/283 (26.86%), Postives = 103/283 (36.40%), Query Frame = 1
Query: 22 VHKNPYMALLKDYVECFFPHGSGAGCMDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNW-INHNNHYHHNTAVPGLPHP---------------------------------VRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRS 768
+H +PY L+ DY + PHG G G + S+ ELFLR++VE WLEG+ VL + E A L NW + + TA P P + H AQ P V PV +A PT+ + LL++ AHLLSD L + C +P P P L RP + FL+A S+ F L VE+WL W++PW + L RS
Sbjct: 349 LHNSPYNRLVLDYAQSLLPHG-GYGSLSSVG------ELFLRIVVERWLEGSTVLQEEIQMRIHEDQAQLRPRSGSLSPNWRVTKGSSRGRTTAQPLSSPPSSLAAGEGGSRRILMPTSSTDWDTRETFMDSSVMAAHHEDAQKPPVL--PVEFWEGTAFATPTEKQMQALLILVAHLLSDSSLAENC---------------------------YP-------HPPPPVRILHRP-LRVFLQALLENMSA-NRNVPQFILAVEIWLTWLQPWHAGRKLHRRS 586
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: A0A6A3M0W8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3M0W8_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.870e-8 Identity = 67/255 (26.27%), Postives = 101/255 (39.61%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSP 771
GV L NPY LL Y+ F + A + ++ LFL +L+EFWL N + F E P G +TA PG+ P PT + + + + Y P+D L LL+ HLLSD A +S+ + GG G G ++ ++ ++RP +++F R FS A I T F V++WL ++RPW S +E + P
Sbjct: 313 GVAALTKGNPYNVLLLQYLRAFLLDSNRGVKSRFHAKLLKDSNLFLHILIEFWLRQNLI---AFSDE-----------PVGA-------------STAAPGVIRPP----PTGNM--LVSPFASVYTSTSYMAPSDDLLSSLLLTIIHLLSDSFFPAPLADDSSNGSQ--GCAGGMVV-------------GSGGVYLSRSITMMRPPLYAFFRLVFSRAP-IGLSPTAFLAIVDVWLAYIRPWHCRSWIESKDP 518
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: M4BP06_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BP06_HYAAE) HSP 1 Score: 66.6 bits (161), Expect = 6.540e-8 Identity = 71/257 (27.63%), Postives = 103/257 (40.08%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAG-MDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIAN-EYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSP 771
GV L +PY LL Y+ F P S G G + ++ LFL +L+EFWL N + F E P G +TA PG+ P P++ + P A + Y P+D L LL+ +LLSD T A TN G G G G+ ++ ++ LLRP +++F R FS A I F V++WL +++PW S ++ R P
Sbjct: 292 GVAALTRGSPYSVLLLQYLRAFLPDTS-RGVKSRFHGKLLKDSNLFLHILIEFWLRQNLI---SFSNE-----------PVGA-------------STAAPGVFRPP----PSSNM---LASPFAAVYTSTSYMAPSDDLLSSLLLAIIYLLSDSFFP------TPLAGDTTNGSQG---------GETGMISGSGGAYLSRSVTLLRPPLYAFFRLVFSRAP-IGLSPRAFMAIVDVWLAYIQPWRCRSWMDSRDP 497
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: H3GFD6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFD6_PHYRM) HSP 1 Score: 65.5 bits (158), Expect = 1.500e-7 Identity = 62/256 (24.22%), Postives = 101/256 (39.45%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVR-GHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSP 771
GV L NPY LL Y+ F P + A + ++ LFL +L+EFWL N + ++D P G +TA PG+ P G++ + +V + Y P+D L LL+ HLLSD A ++S + GG G ++ ++ ++RP +++F R FS A I F ++WL +++PW + +E + P
Sbjct: 286 GVAALTRGNPYNVLLVQYLRAFLPDSNRGVKSRFHAKLLKDSNLFLHILIEFWLRQNLI-----------SFSD---EPVGA-------------STAAPGVFRPPPPGNMMVSPFASVYT-------STSYMAPSDDLLSSLLLTIIHLLSDSFFPAPLAEDSASGSQ-----------------------GGAGVYLSRSVTMVRPPLYAFFRLVFSRAP-IGLSPAAFLAITDVWLAYIQPWNCRAWIESKDP 483
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: A0A3M6VEJ3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VEJ3_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.510e-7 Identity = 64/256 (25.00%), Postives = 96/256 (37.50%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAG-MDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSP 771
GV L NPY LL Y+ F P S G G + ++ LFL +L+EFWL N + P A SSP G++ + +V + Y P+D L LL+ +LLSD A +T+ + GG G G ++ ++ +LRP +++F R FS A I T F ++WL +++PW +E R P
Sbjct: 296 GVAALTRGNPYNVLLLQYLRAFLPD-SNRGVKSRFHGKLLKDSNLFLHILIEFWLRQNLISFSDEPVGALTATAGVFSSP--------------------------PPGNMLVSPFASVYT-------STSYMAPSDDLLSSLLLTIIYLLSDSFFPAPLAE----DSTIRSQGGAAGMVV-----------GSGGVYLSRSVNMLRPPLYAFFRLVFSRAP-IGLSPTAFLAITDVWLAYIQPWHCLCWIESRDP 501
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: A0A2D4CDS2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDS2_PYTIN) HSP 1 Score: 63.9 bits (154), Expect = 4.600e-7 Identity = 65/255 (25.49%), Postives = 98/255 (38.43%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAGMDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGRSP 771
GV L NPY LL Y++ FFP S + + LFL VL+EFWL N ++ +A S+P + + + P R P A + T Y P+D L L++ HLLSD + TSS + +G G G +TP++ +LR ++ FLR FS A I F ++WL +++PW + +G +P
Sbjct: 359 GVVSLTRGNPYNVLLLQYLKVFFPDSSKPVQSRFRGXILQFSNLFLHVLIEFWLRQNLIV-----------FATDASNPSTVDASLL--------------YRAPQRLASPFAAVHT----------QTTYMAPSDDLLSSLVLTIIHLLSDSFFPASLDAATSSQYSGMVVGSG-------------------GGYLTPSVTVLRRPLYEFLRLVFSRAP-IGLSPAAFYAITDVWLAYIQPWNCKAWSQGHAP 558
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Match: A0A484DTM7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTM7_BRELC) HSP 1 Score: 58.2 bits (139), Expect = 2.940e-5 Identity = 62/254 (24.41%), Postives = 99/254 (38.98%), Query Frame = 1
Query: 7 GVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAG-MDRNCELFLRVLVEFWLEGNAVLHPGFPKEVAEQYADALSSPYGLHQNWINHNNHYHHNTAVPGLPHPVRGHVPTAQLPTVQCDPVTAEIANEYAPPTDMALHGLLVVSAHLLSDPRLVDACARVTSSAATVTNMGGGXXXXXXXXXGTFPAQGGGNGSPITPALELLRPHVFSFLRAAFSPASSIETGSTVFTLTVELWLLWMRPWASPSILEGR 765
G+ L +PY LL Y+ F P S G G + + LFL +L+EFWL+ N V E + A+ P + G H V P A + T + Y P+D L L + HLL+D A +T +A+ ++ G G ++ ++ +LRP +++F R FS A I ST F ++WL +++PW S ++ +
Sbjct: 291 GIVALTKGSPYNVLLLQYLRAFLPD-SNYGTRSRFHGRLLKESNLFLHILIEFWLQQNLVTFSDESLEASTPARCAIRPP-------------------LAGSMHIVS---PFASVFT----------STSYVAPSDDLLSSLSLTIIHLLADSFFP---AALTEDSASGSH--------------------GNAGVYLSRSVTMLRPPLYAFFRLVFSRAP-IGLSSTAFLAIADVWLAFIQPWCCRSWIDSK 487 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11384.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11384.885.1 >prot_H-paniculata_contig11384.885.1 ID=prot_H-paniculata_contig11384.885.1|Name=mRNA_H-paniculata_contig11384.885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=484bp RFGVRGLVHKNPYMALLKDYVECFFPHGSGAGCMDSLAGMDRNCELFLRVback to top mRNA from alignment at H-paniculata_contig11384:1932..7042- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11384.885.1 ID=mRNA_H-paniculata_contig11384.885.1|Name=mRNA_H-paniculata_contig11384.885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5111bp|location=Sequence derived from alignment at H-paniculata_contig11384:1932..7042- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11384:1932..7042- >mRNA_H-paniculata_contig11384.885.1 ID=mRNA_H-paniculata_contig11384.885.1|Name=mRNA_H-paniculata_contig11384.885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2904bp|location=Sequence derived from alignment at H-paniculata_contig11384:1932..7042- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |