mRNA_H-paniculata_contig33.8843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33.8843.1
Unique NamemRNA_H-paniculata_contig33.8843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33.8843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33contigH-paniculata_contig33:12281..12619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size341
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.367365-CDS-H-paniculata_contig33:12280..125831622930017.367365-CDS-H-paniculata_contig33:12280..12583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33 12281..12583 +
1691481111.6072235-CDS-H-paniculata_contig33:12280..125831691481111.6072235-CDS-H-paniculata_contig33:12280..12583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33 12281..12583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930017.388384-UTR-H-paniculata_contig33:12583..126191622930017.388384-UTR-H-paniculata_contig33:12583..12619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33 12584..12619 +
1691481111.6164925-UTR-H-paniculata_contig33:12583..126191691481111.6164925-UTR-H-paniculata_contig33:12583..12619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33 12584..12619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33.8843.1prot_H-paniculata_contig33.8843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33 12281..12583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33.8843.1

>prot_H-paniculata_contig33.8843.1 ID=prot_H-paniculata_contig33.8843.1|Name=mRNA_H-paniculata_contig33.8843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
THSISWQEFFTSGWTRTEGNSCATLGRERQGDGGRDKTLKAPTHNKWKAV
ILPGDFEFRHNTNECTRWGIGFHFSIFAWCIALIGVYICLHFSCIFQPMA
*
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mRNA from alignment at H-paniculata_contig33:12281..12619+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33.8843.1 ID=mRNA_H-paniculata_contig33.8843.1|Name=mRNA_H-paniculata_contig33.8843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig33:12281..12619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCACTCTATAAGCTGGCAGGAATTTTTCACCTCGGGATGGACGCGAAC
AGAAGGAAATAGCTGTGCTACCTTGGGGAGAGAAAGGCAGGGGGATGGGG
GAAGAGATAAGACACTTAAAGCTCCCACGCACAACAAGTGGAAGGCAGTA
ATCTTGCCTGGGGATTTTGAGTTCCGTCACAACACGAACGAGTGTACACG
GTGGGGGATAGGCTTCCATTTTTCTATTTTCGCTTGGTGTATTGCTCTTA
TTGGTGTCTACATCTGTCTACATTTTTCCTGTATTTTCCAGCCGATGGCC
TAGCTCACGACCCTCCCCAAAAGCTCTTGGTATCTTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig33:12281..12619+

>mRNA_H-paniculata_contig33.8843.1 ID=mRNA_H-paniculata_contig33.8843.1|Name=mRNA_H-paniculata_contig33.8843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig33:12281..12619+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCACTCTATAAGCTGGCAGGAATTTTTCACCTCGGGATGGACGCGAAC
AGAAGGAAATAGCTGTGCTACCTTGGGGAGAGAAAGGCAGGGGGATGGGG
GAAGAGATAAGACACTTAAAGCTCCCACGCACAACAAGTGGAAGGCAGTA
ATCTTGCCTGGGGATTTTGAGTTCCGTCACAACACGAACGAGTGTACACG
GTGGGGGATAGGCTTCCATTTTTCTATTTTCGCTTGGTGTATTGCTCTTA
TTGGTGTCTACATCTGTCTACATTTTTCCTGTATTTTCCAGCCGATGGCC
TAGACTCACTCTATAAGCTGGCAGGAATTTTTCACCTCGGGATGGACGCG
AACAGAAGGAAATAGCTGTGCTACCTTGGGGAGAGAAAGGCAGGGGGATG
GGGGAAGAGATAAGACACTTAAAGCTCCCACGCACAACAAGTGGAAGGCA
GTAATCTTGCCTGGGGATTTTGAGTTCCGTCACAACACGAACGAGTGTAC
ACGGTGGGGGATAGGCTTCCATTTTTCTATTTTCGCTTGGTGTATTGCTC
TTATTGGTGTCTACATCTGTCTACATTTTTCCTGTATTTTCCAGCCGATG
GCCTAG
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