mRNA_H-paniculata_contig11381.883.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11381.883.1
Unique NamemRNA_H-paniculata_contig11381.883.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11381.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11381contigH-paniculata_contig11381:1792..2215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000180.1
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.819533-CDS-H-paniculata_contig11381:1791..19261622928844.819533-CDS-H-paniculata_contig11381:1791..1926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11381 1792..1926 +
1691480642.1375372-CDS-H-paniculata_contig11381:1791..19261691480642.1375372-CDS-H-paniculata_contig11381:1791..1926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11381 1792..1926 +
1622928844.8351758-CDS-H-paniculata_contig11381:2068..22151622928844.8351758-CDS-H-paniculata_contig11381:2068..2215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11381 2069..2215 +
1691480642.1483774-CDS-H-paniculata_contig11381:2068..22151691480642.1483774-CDS-H-paniculata_contig11381:2068..2215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11381 2069..2215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11381.883.1prot_H-paniculata_contig11381.883.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11381 1792..2215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11381.883.1

>prot_H-paniculata_contig11381.883.1 ID=prot_H-paniculata_contig11381.883.1|Name=mRNA_H-paniculata_contig11381.883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
RHILQDWSVWLSKPDSKGNDVNFNIENICVDDLGLGETPLYDRLQCKFKN
PLVEAQQFYLQYKLPSELYPINIELCQKRHVEAAFKKFAALDQA
back to top

mRNA from alignment at H-paniculata_contig11381:1792..2215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11381.883.1 ID=mRNA_H-paniculata_contig11381.883.1|Name=mRNA_H-paniculata_contig11381.883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=424bp|location=Sequence derived from alignment at H-paniculata_contig11381:1792..2215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCACATCCTACAAGACTGGAGTGTGTGGCTTTCGAAACCGGACAGCAA
GGGCAATGACGTCAATTTCAACATCGAGAACATTTGCGTGGATGACCTTG
GATTAGGGGAGACACCACTTTACGACAGGCTGCAGGTAGGTCAGGTTGAG
ACTAGTGTGAGACTACCTGCTGCGAGTTGTTCATGCTGTTTTTATTTTTT
TTATCATAGTTCTGGTGCTAGACCCCTCCCTACTTGGATCCATGCCCGTA
CGTTTCGTGCAATGTTTCTACATGCAGTGCAAGTTCAAAAACCCCTTGGT
CGAGGCGCAACAGTTCTACCTGCAGTACAAGCTACCCTCGGAGCTTTATC
CCATAAACATCGAGCTATGTCAAAAGCGGCACGTCGAGGCTGCCTTCAAG
AAGTTCGCAGCGCTTGACCAGGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11381:1792..2215+

>mRNA_H-paniculata_contig11381.883.1 ID=mRNA_H-paniculata_contig11381.883.1|Name=mRNA_H-paniculata_contig11381.883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig11381:1792..2215+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCACATCCTACAAGACTGGAGTGTGTGGCTTTCGAAACCGGACAGCAA
GGGCAATGACGTCAATTTCAACATCGAGAACATTTGCGTGGATGACCTTG
GATTAGGGGAGACACCACTTTACGACAGGCTGCAGAGGCACATCCTACAA
GACTGGAGTGTGTGGCTTTCGAAACCGGACAGCAAGGGCAATGACGTCAA
TTTCAACATCGAGAACATTTGCGTGGATGACCTTGGATTAGGGGAGACAC
CACTTTACGACAGGCTGCAGTGCAAGTTCAAAAACCCCTTGGTCGAGGCG
CAACAGTTCTACCTGCAGTACAAGCTACCCTCGGAGCTTTATCCCATAAA
CATCGAGCTATGTCAAAAGCGGCACGTCGAGGCTGCCTTCAAGAAGTTCG
CAGCGCTTGACCAGGCATGCAAGTTCAAAAACCCCTTGGTCGAGGCGCAA
CAGTTCTACCTGCAGTACAAGCTACCCTCGGAGCTTTATCCCATAAACAT
CGAGCTATGTCAAAAGCGGCACGTCGAGGCTGCCTTCAAGAAGTTCGCAG
CGCTTGACCAGGCA
back to top