mRNA_H-paniculata_contig32913.8828.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32913.8828.1
Unique NamemRNA_H-paniculata_contig32913.8828.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32913.8828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32913contigH-paniculata_contig32913:1158..1654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size447
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.633755-UTR-H-paniculata_contig32913:1157..12071622930015.633755-UTR-H-paniculata_contig32913:1157..1207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32913 1158..1207 +
1691481110.9181688-UTR-H-paniculata_contig32913:1157..12071691481110.9181688-UTR-H-paniculata_contig32913:1157..1207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32913 1158..1207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.6478367-CDS-H-paniculata_contig32913:1207..16541622930015.6478367-CDS-H-paniculata_contig32913:1207..1654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32913 1208..1654 +
1691481110.9315808-CDS-H-paniculata_contig32913:1207..16541691481110.9315808-CDS-H-paniculata_contig32913:1207..1654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32913 1208..1654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32913.8828.1prot_H-paniculata_contig32913.8828.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32913 1208..1654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32913.8828.1

>prot_H-paniculata_contig32913.8828.1 ID=prot_H-paniculata_contig32913.8828.1|Name=mRNA_H-paniculata_contig32913.8828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MYIVSICLQRSRGSHDHGFHLQSNHNILSPATPSTRYRSIIEHSSRAYLT
AAYRQQYISPRLTSFDFWSSNCHGNSCLASTWKTCILGRKQAMSPGCDRF
SNATRSISRTETDMTRSRKHPTNRPQIHLDTYISLATPPNGILHIICQ*
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mRNA from alignment at H-paniculata_contig32913:1158..1654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32913.8828.1 ID=mRNA_H-paniculata_contig32913.8828.1|Name=mRNA_H-paniculata_contig32913.8828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=497bp|location=Sequence derived from alignment at H-paniculata_contig32913:1158..1654+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGAATGTTATGGACCTACTCATTCATGACTGAAGCTTGCAGTGTGTGA
ATGTATATTGTTTCTATCTGTCTCCAGCGCTCACGTGGAAGCCATGACCA
TGGTTTTCACCTCCAAAGTAACCACAATATTTTGTCACCGGCCACCCCAT
CCACACGATACCGCAGCATAATCGAACACAGCAGTAGAGCGTATTTAACT
GCAGCATACAGACAGCAATACATTTCCCCCCGTCTTACCTCGTTCGATTT
TTGGTCAAGTAATTGCCACGGTAACAGCTGCCTAGCTTCGACGTGGAAGA
CATGTATACTGGGAAGAAAGCAGGCCATGTCACCGGGATGCGATCGTTTT
TCAAACGCGACTAGATCTATCTCGAGAACGGAGACAGACATGACGCGGTC
GAGAAAGCACCCCACGAATCGACCACAGATACATCTAGATACATACATCT
CCTTAGCGACACCTCCCAACGGCATCCTACACATTATTTGTCAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig32913:1158..1654+

>mRNA_H-paniculata_contig32913.8828.1 ID=mRNA_H-paniculata_contig32913.8828.1|Name=mRNA_H-paniculata_contig32913.8828.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig32913:1158..1654+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATATTGTTTCTATCTGTCTCCAGCGCTCACGTGGAAGCCATGACCA
TGGTTTTCACCTCCAAAGTAACCACAATATTTTGTCACCGGCCACCCCAT
CCACACGATACCGCAGCATAATCGAACACAGCAGTAGAGCGTATTTAACT
GCAGCATACAGACAGCAATACATTTCCCCCCGTCTTACCTCGTTCGATTT
TTGGTCAAGTAATTGCCACGGTAACAGCTGCCTAGCTTCGACGTGGAAGA
CATGTATACTGGGAAGAAAGCAGGCCATGTCACCGGGATGCGATCGTTTT
TCAAACGCGACTAGATCTATCTCGAGAACGGAGACAGACATGACGCGGTC
GAGAAAGCACCCCACGAATCGACCACAGATACATCTAGATACATACATCT
CCTTAGCGACACCTCCCAACGGCATCCTACACATTATTTGTCAATAGATG
TATATTGTTTCTATCTGTCTCCAGCGCTCACGTGGAAGCCATGACCATGG
TTTTCACCTCCAAAGTAACCACAATATTTTGTCACCGGCCACCCCATCCA
CACGATACCGCAGCATAATCGAACACAGCAGTAGAGCGTATTTAACTGCA
GCATACAGACAGCAATACATTTCCCCCCGTCTTACCTCGTTCGATTTTTG
GTCAAGTAATTGCCACGGTAACAGCTGCCTAGCTTCGACGTGGAAGACAT
GTATACTGGGAAGAAAGCAGGCCATGTCACCGGGATGCGATCGTTTTTCA
AACGCGACTAGATCTATCTCGAGAACGGAGACAGACATGACGCGGTCGAG
AAAGCACCCCACGAATCGACCACAGATACATCTAGATACATACATCTCCT
TAGCGACACCTCCCAACGGCATCCTACACATTATTTGTCAATAG
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