mRNA_H-paniculata_contig32903.8826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32903.8826.1
Unique NamemRNA_H-paniculata_contig32903.8826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME)

HSP 1 Score: 73.2 bits (178), Expect = 2.040e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
            L++DL GPM++ SLGG  YV+++VD YSRF  V+F+K KSDA     S        KG KI  IR+D+G EFD
Sbjct:   95 LHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKIIRIRSDHGKEFD 167          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS)

HSP 1 Score: 70.9 bits (172), Expect = 6.290e-13
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
            +++DL GPM+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:  152 VHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 222          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA)

HSP 1 Score: 71.2 bits (173), Expect = 9.740e-13
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
            +++DL GPM+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:  542 VHMDLMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG-SLKCIRSDHGGEF 612          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 70.1 bits (170), Expect = 2.480e-12
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
            ++VDL GP+ V SLGGS Y++ +VD +SR  TV+F+K K +A   L  YI +     G K+  +RTDNG EF
Sbjct:  489 VHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEF 560          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO)

HSP 1 Score: 69.7 bits (169), Expect = 3.380e-12
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
            L+VDL GP R  SLGG  Y+M++VD YSR+  V F+++KS+A   L+    +    KG+ I  +R+D+G EF+
Sbjct:  232 LHVDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFE 304          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI)

HSP 1 Score: 68.9 bits (167), Expect = 6.310e-12
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
            +++DL GPMRV S GG+ Y + ++D YSR+  ++F+KKKSD  A  + +     T KG KI  I++DNG EF
Sbjct:  467 IHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKIKCIQSDNGKEF 538          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A396JJF4_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JJF4_MEDTR)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-11
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
            L++DL GP+   SL GS Y ++IVD YSR+  VKFIK K  A     S+  +  + K LKI  +R+D+GGEF+
Sbjct:  855 LHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFE 927          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2JBX4_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX4_9BRAS)

HSP 1 Score: 64.7 bits (156), Expect = 1.210e-11
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    7 VDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
            +D  GPM+V S+ G  YV ++VD YSR+  V+FI+ KSD  A+ + +  + I  KG  I  IR+D+GGEF
Sbjct:    1 MDFMGPMQVESIAGKHYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVINEKG-SIKRIRSDHGGEF 69          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A699MYX1_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699MYX1_TANCI)

HSP 1 Score: 67.8 bits (164), Expect = 1.210e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
            L++DL GPMR+ S+ G  YV++IVD YSR+  V F++ K +A  A+++++   I      +  IRTDNG EF
Sbjct:   95 LHIDLCGPMRIASINGKRYVLVIVDDYSRYTLVHFLRSKDEAPEAIKTFLKRIIVLLQSLVIIIRTDNGTEF 166          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME)

HSP 1 Score: 67.8 bits (164), Expect = 1.600e-11
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
            L++DL GPM+  SLG   YV+++VD YSRF  V+F+K KSD      S        KG KI  IR+D+G EFD
Sbjct:  345 LHLDLIGPMKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFD 417          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7TVE6_CUCME2.040e-1350.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6D2HW89_9BRAS6.290e-1347.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A1J3ITQ9_NOCCA9.740e-1347.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A293MM55_ORNER2.480e-1247.22Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A7N2LKM9_QUELO3.380e-1243.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5GTD8_9HEMI6.310e-1245.83Integrase catalytic domain-containing protein (Fra... [more]
A0A396JJF4_MEDTR1.190e-1146.58Putative RNA-directed DNA polymerase n=3 Tax=Medic... [more]
A0A6D2JBX4_9BRAS1.210e-1145.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A699MYX1_TANCI1.210e-1143.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3DQT9_CUCME1.600e-1147.95Gag/pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32903contigH-paniculata_contig32903:101..322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.3615065-CDS-H-paniculata_contig32903:100..2981622930015.3615065-CDS-H-paniculata_contig32903:100..298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32903 101..298 -
1691481110.7993789-CDS-H-paniculata_contig32903:100..2981691481110.7993789-CDS-H-paniculata_contig32903:100..298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32903 101..298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930015.3840141-UTR-H-paniculata_contig32903:298..3221622930015.3840141-UTR-H-paniculata_contig32903:298..322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32903 299..322 -
1691481110.8083558-UTR-H-paniculata_contig32903:298..3221691481110.8083558-UTR-H-paniculata_contig32903:298..322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32903 299..322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32903.8826.1prot_H-paniculata_contig32903.8826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32903 101..298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32903.8826.1

>prot_H-paniculata_contig32903.8826.1 ID=prot_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKG
LKIGAIRTDNGGEFDG
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mRNA from alignment at H-paniculata_contig32903:101..322-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32903.8826.1 ID=mRNA_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig32903:101..322- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTACGTCGACCTGGGCGGACCCATGCGAGTAACCAGCTTGGGTGGTAG CTCGTATGTGATGATCATCGTCGACCACTACTCGCGATTCCAGACTGTCA AGTTCATCAAGAAGAAGAGCGATGCCACTGCAGCTCTCCAGAGTTACATC GCCGAATACATCACGCCGAAGGGACTCAAGATTGGCGCCATTCGTACGGA CAACGGCGGGGAGTTCGATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig32903:101..322-

>mRNA_H-paniculata_contig32903.8826.1 ID=mRNA_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig32903:101..322- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGTAACCAGCTTGGGTGGTAGCTCGTATGTGATGATCATCGTCGA
CCACTACTCGCGATTCCAGACTGTCAAGTTCATCAAGAAGAAGAGCGATG
CCACTGCAGCTCTCCAGAGTTACATCGCCGAATACATCACGCCGAAGGGA
CTCAAGATTGGCGCCATTCGTACGGACAACGGCGGGGAGTTCGATGGCAT
GCGAGTAACCAGCTTGGGTGGTAGCTCGTATGTGATGATCATCGTCGACC
ACTACTCGCGATTCCAGACTGTCAAGTTCATCAAGAAGAAGAGCGATGCC
ACTGCAGCTCTCCAGAGTTACATCGCCGAATACATCACGCCGAAGGGACT
CAAGATTGGCGCCATTCGTACGGACAACGGCGGGGAGTTCGATGGC
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