mRNA_H-paniculata_contig32903.8826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME) HSP 1 Score: 73.2 bits (178), Expect = 2.040e-13 Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
L++DL GPM++ SLGG YV+++VD YSRF V+F+K KSDA S KG KI IR+D+G EFD
Sbjct: 95 LHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKIIRIRSDHGKEFD 167
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS) HSP 1 Score: 70.9 bits (172), Expect = 6.290e-13 Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
+++DL GPM+V S+GG YV ++VD YSR+ V+FI+ KSD A+ + + + IT KG + IR+D+GGEF
Sbjct: 152 VHMDLMGPMQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 222
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA) HSP 1 Score: 71.2 bits (173), Expect = 9.740e-13 Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
+++DL GPM+V S+GG YV ++VD YSR+ V+FI+ KSD A+ + + + IT KG + IR+D+GGEF
Sbjct: 542 VHMDLMGPMQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG-SLKCIRSDHGGEF 612
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 70.1 bits (170), Expect = 2.480e-12 Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
++VDL GP+ V SLGGS Y++ +VD +SR TV+F+K K +A L YI + G K+ +RTDNG EF
Sbjct: 489 VHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEF 560
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO) HSP 1 Score: 69.7 bits (169), Expect = 3.380e-12 Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
L+VDL GP R SLGG Y+M++VD YSR+ V F+++KS+A L+ + KG+ I +R+D+G EF+
Sbjct: 232 LHVDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFE 304
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI) HSP 1 Score: 68.9 bits (167), Expect = 6.310e-12 Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
+++DL GPMRV S GG+ Y + ++D YSR+ ++F+KKKSD A + + T KG KI I++DNG EF
Sbjct: 467 IHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKIKCIQSDNGKEF 538
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A396JJF4_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JJF4_MEDTR) HSP 1 Score: 68.2 bits (165), Expect = 1.190e-11 Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
L++DL GP+ SL GS Y ++IVD YSR+ VKFIK K A S+ + + K LKI +R+D+GGEF+
Sbjct: 855 LHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFE 927
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2JBX4_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX4_9BRAS) HSP 1 Score: 64.7 bits (156), Expect = 1.210e-11 Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 7 VDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
+D GPM+V S+ G YV ++VD YSR+ V+FI+ KSD A+ + + + I KG I IR+D+GGEF
Sbjct: 1 MDFMGPMQVESIAGKHYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVINEKG-SIKRIRSDHGGEF 69
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A699MYX1_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699MYX1_TANCI) HSP 1 Score: 67.8 bits (164), Expect = 1.210e-11 Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 216
L++DL GPMR+ S+ G YV++IVD YSR+ V F++ K +A A+++++ I + IRTDNG EF
Sbjct: 95 LHIDLCGPMRIASINGKRYVLVIVDDYSRYTLVHFLRSKDEAPEAIKTFLKRIIVLLQSLVIIIRTDNGTEF 166
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME) HSP 1 Score: 67.8 bits (164), Expect = 1.600e-11 Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 1 LYVDLGGPMRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 219
L++DL GPM+ SLG YV+++VD YSRF V+F+K KSD S KG KI IR+D+G EFD
Sbjct: 345 LHLDLIGPMKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFD 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32903.8826.1 >prot_H-paniculata_contig32903.8826.1 ID=prot_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGback to top mRNA from alignment at H-paniculata_contig32903:101..322- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32903.8826.1 ID=mRNA_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig32903:101..322- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32903:101..322- >mRNA_H-paniculata_contig32903.8826.1 ID=mRNA_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig32903:101..322- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |