mRNA_H-paniculata_contig1138.882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1138.882.1
Unique NamemRNA_H-paniculata_contig1138.882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Match: A0A6H5JPM1_9PHAE (PfkB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPM1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 9.300e-28
Identity = 61/90 (67.78%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:  229 TSTATADAMTDRQDRRGIVVIGLNGALQRTIVFAPPKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAEEDG-GRGGXXGDVDVTLAHF 495
            + TA     T    RR +VV+GLNGA QRTI+F PPKGL+VG VNRASSVG+GIGGKGQNVCVALR LAE  G    G  GDVDVTLAHF
Sbjct:   31 SGTAVTSHRTSEDYRRSLVVVGLNGAQQRTIIFKPPKGLRVGDVNRASSVGSGIGGKGQNVCVALRTLAEGGGVADDGAQGDVDVTLAHF 120
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BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Match: B8C887_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C887_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.260e-6
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  274 RGIVVIGLNGALQRTIVFAPPKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAEEDG 447
            + +V+IGLN ALQ+  V  P   L+ G+V+RA  V  G+GGKGQ+V VA+  L + DG
Sbjct:   11 QSVVIIGLNAALQKRFVLPPSTNLEPGNVHRAHRVDTGVGGKGQDVGVAMSCLMQSDG 68
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BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Match: A0A0L0FLD3_9EUKA (PfkB domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLD3_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 5.560e-6
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  280 IVVIGLNGALQRTIVFAPPKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAE 438
            I+++GLNGALQRTI       L  G+VNR  SV  GIGGKGQNV VA ++  E
Sbjct:    5 IMIVGLNGALQRTITL---NSLAQGAVNRGQSVKQGIGGKGQNVYVAAKKCQE 54
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BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Match: A0A6U0RXL0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0RXL0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.530e-5
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  283 VVIGLNGALQRTIVFAPPKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAEED 444
            V++GLN A Q+  + +P   L+ GSV+RA+S+  GIGGKGQ+V +AL  L+  +
Sbjct:   59 VIVGLNAAFQKRFILSPDTSLEPGSVHRAASLEEGIGGKGQDVAIALSCLSSAE 112
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BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Match: A0A448ZKW3_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKW3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.830e-5
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  280 IVVIGLNGALQRTIVFAPPKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAEE 441
            IVV+GLNGALQ+  V    + L  G+V+RA+ V  G+GGKGQ+V +AL  L  E
Sbjct:   42 IVVVGLNGALQKRFVLPDRQVLVPGNVHRAAGVDFGVGGKGQDVAIALHCLLTE 95
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BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Match: A0A7S2L182_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L182_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.040e-5
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:  238 ATADAMTDRQDRRGIVVIGLNGALQRTIVFAPPKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAEED 444
            +T  A T       IVV+GLN ALQ+  +  P   L+ G+V+RA +   G+GGKGQ+V VA+  L  ++
Sbjct:   12 STMSATTTHALSTSIVVVGLNAALQKRFILPPNTNLEPGNVHRAHNSETGVGGKGQDVGVAMSCLMSKE 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1138.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JPM1_9PHAE9.300e-2867.78PfkB domain-containing protein n=2 Tax=Ectocarpus ... [more]
B8C887_THAPS1.260e-648.28Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A0L0FLD3_9EUKA5.560e-656.60PfkB domain-containing protein n=1 Tax=Sphaeroform... [more]
A0A6U0RXL0_9STRA1.530e-546.30Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A448ZKW3_9STRA2.830e-551.85Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A7S2L182_9STRA5.040e-540.58Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1138contigH-paniculata_contig1138:22639..25937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size497
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1138.882.1prot_H-paniculata_contig1138.882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1138 22672..25937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.748267-UTR-H-paniculata_contig1138:22638..226711622928844.748267-UTR-H-paniculata_contig1138:22638..22671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1138 22639..22671 +
1691480642.10898-UTR-H-paniculata_contig1138:22638..226711691480642.10898-UTR-H-paniculata_contig1138:22638..22671Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1138 22639..22671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.7644196-CDS-H-paniculata_contig1138:22671..228231622928844.7644196-CDS-H-paniculata_contig1138:22671..22823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 22672..22823 +
1691480642.1169558-CDS-H-paniculata_contig1138:22671..228231691480642.1169558-CDS-H-paniculata_contig1138:22671..22823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 22672..22823 +
1622928844.774698-CDS-H-paniculata_contig1138:25627..259371622928844.774698-CDS-H-paniculata_contig1138:25627..25937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 25628..25937 +
1691480642.1283689-CDS-H-paniculata_contig1138:25627..259371691480642.1283689-CDS-H-paniculata_contig1138:25627..25937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1138 25628..25937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1138.882.1

>prot_H-paniculata_contig1138.882.1 ID=prot_H-paniculata_contig1138.882.1|Name=mRNA_H-paniculata_contig1138.882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MCVRAGKVLLLTALLFVAAPLSPTLAFLLGSLQLSTVKQHKSKTSAFLRS
RASNQHQLAMSQLEVTSTATADAMTDRQDRRGIVVIGLNGALQRTIVFAP
PKGLKVGSVNRASSVGAGIGGKGQNVCVALRRLAEEDGGRGGGGGDVDVT
LAHF
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mRNA from alignment at H-paniculata_contig1138:22639..25937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1138.882.1 ID=mRNA_H-paniculata_contig1138.882.1|Name=mRNA_H-paniculata_contig1138.882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3299bp|location=Sequence derived from alignment at H-paniculata_contig1138:22639..25937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGGAACTTTCTGCGGACCATCTGGGTGCTTAGATGTGCGTTCGGGCCGG
GAAGGTTCTGCTATTGACAGCACTTCTCTTCGTCGCAGCCCCTTTGTCTC
CCACGCTTGCATTTTTATTGGGTTCGTTACAGCTATCTACCGTCAAGCAG
CACAAGTCGAAGACGAGCGCGTTCTTGCGCAGCAGGTATGGTATCCGATC
TCTTGTGCCCAATACAGTGCTACTGTATTGAGTATTTACAGTAAGTAGTC
AATGCCCCTTACACCTTGTCTAGAGATGAAGACTTGCACCGCCGTTGTTG
CTCATGATGATTGATAGTTTTCAATATCTGAACTCTCGTTTCGCTTATCG
TGAAAATGAGTCCAGCTGGGAAGGGGCTCAACTAATGGTAATTCGTCTCT
CTAATTTGCACCTGTCTTCTCCAGCTTAACGGTAGCCTCTCGATAAACTT
GAGCTTGTTTCCTGTGATATGTACTAATCATGAACAAGTAAGATTACACA
GTACGTTGCAATGTTTTGATTGGCAACGCACCGATCTTAGTGCGCAACAG
CAGCGGGGGCTAGTTTCATCCAGATTGTCGGCCTTCTTGGCTACGAAAGT
TTCTGGGAATGCATCACTTCGTTCAGACCGGGGTGTGTGATTGTAGCTGA
CGTTGAATAACACCCCCGGGGGAAGTATAACACACTACCCCTCTTATTGA
TTTAACTCCTGTCATAAAAAAAACAAACGAACAAGAACGGAACCGACAGT
CCCGCGGCAAAATTGCCGCGAGACGGGGCGGGGTCTTTGTTCACGAGAGG
AGGGGGTGACTCACGACCTTGTAGGTCTGGAGTATGGTAGCCGATTGTAC
ACGAAAATGTAGGAGTAGGCCAATCATGCCCACCGGCCGATCAAAAACGT
GTCGTCTCCGTTATATTATCAAGTAGTGTTGGGGTGACAGGAAATCTACT
GAATCCCTACGGCTGTTCAGGGAGGTCGGCGAGTCGTGCTTTTTCATTTT
TGGGCTGCTGTATTCTTGCTAGGCGAAGTCCTTTTGGAATGGTTGTGTTT
CGTGCGCGCAACAGATGCGTAGTATCAACAGCGAGGACGAGAGCGATGGC
AACGCATGGTATGCCTGACTACCCTGCCACTGTGGCTGCGGCCGATGCTT
TCAGCAACGACACAGGTAGACGCAGCTGCGTGCTGTCGTCGTGGAACGCA
AAACCATGACAACGTCTGATTGTGAATATGGGTGTGTAAGAATTACAGGA
CTGTCTGCACTGTCTGTCGAGTTCCCTATCGCCGTAATCATGTCGTGGGC
ATTTTGGGCCTAGTGGTCGCGACAAAGGACGAGGTTCCGTTTTCTTGAGG
GTCTGGGTCGGCGTATAATAGCATACTACTACCATGGCGACCAAGCCGGG
GCGATCGAGCCGTCTGAGTTTTTTTGCCGTACTCATCAAGCTGTACACCT
TTTGCTGTCCACTCACGGAAGTTCAACATTTTGATCCCTGGGGATTCGGT
GAGTGATCGGTTGCACGACCCGACTGATGGCATGGCACAGAGCTATAGCA
CGATTAGTATATTGCTCTTTAGTTCATCGATGATGATGGTTCCGTTGTTT
CAAGGAGATTTAAGTTCACGGGAGGGTCCTGATGAATATGTTGATAAGAT
GTTGGCTGCGTTTGTCCACGCAGAGATTGATTCGATGCTAGTCAGTCACT
CCTGGTGACAACTAGAATGTTCGTCTCCTTTTTTGCCAATAGGCGACTTA
CACTTACTCCACTGTCGACGGTTCCAGCTATTTCTGGCAACTTTAGTTTT
TAAGAACCAATGACGTGATTCAATCAAACCCTCTGCAGGTTACGTGCCGA
ACAGGCAACGTTCGTTTTGGTTCTTCTGTAGAGTATGTCCAACCTGAGCA
ACGTGTTGACCCTACCCTTTTCCGGGTGAAGTCGAGGCCAAGTCAACCGC
ATTAGAAGTCTGTGATAGAAATTTTCAATTTTCCGCCACCCATGAGACGA
CCAATGACCTGTACTTGCAGGCGCTCCTTTTATCTCCGGCCAATCGCAGA
GACGCATTTTCTAAACATCAGAACTCGTTCAATGAGCTGCGGAAAACATG
GCTATATCATGTGTCTGATTGCGCTGAACCGTGCCTCAACGTTTCAAGTT
GAAATTTTTCGAGCCTTCCAGCATGGTCGGCCTCCCTGACGGAGATGGCA
AGAGCGACTTCGAAACTTCCACTGTAGTAACCGCCACTACCGATACAATA
GCAACGATCACCAAAATACCACCGACATGACACACCAGATACAGGATCTT
CTCGCCACGACAACACAGGTTGAAATCTAAGATATTCACGGCAACCCAAA
CCGAGTCAGAGAGGCCATTCCCCAACCCGACCACCATGCTTAAGTTTCAT
CTAACACAGAGTGGCCAGGGGCCAATTCGACAGAGGTCATTTCCCCGTAT
AACTCGAACCCCAACAACCGCAGGCCCGACGTTTTCAAGACACTGATCGA
ACGCCCCCCTGTGATGCGGTAAAGGCTGGCTCTGATCCTTGGGACAGTCG
CTCAATCTTTCCGCCCCTTTCCTCTTATTTTGGTAACTCTTCGAGTAAGT
AATCTAGTAGATTGAAGACGCTGAGTATACCTCTATTTTACTTCACGGCT
ATTGTCATGTTTTTTACACTCTTTCATCTCATTCTAGTTTCGACTCGCTC
GTGCACTCTATGGCACTTTTTCCAAACCGCATTCTCATTGTGTAGGTGCT
GTCCCGCCGGTGAAGCTATTTTTGTCAGGCTTTTCCGCTGCCCCCCCCCC
CCCCCCCTATTGGTCATCATCTTTTTTTTTTGCTGATAGATGTAAACAAC
TGAATTTTGAAGTCATCTGCATAACCTCAAACATGGGTACAGTGGATTTA
TTGTGTAATCTTTAGAGCTGTATTTTATATGCGTATACATATACCCCCCC
CCCCCCCCCTTCTCCCCCCGTCCCCCCACCCTCTAAAAGGGCCTCAAACC
AGCACCAGCTGGCCATGTCGCAGTTGGAAGTCACCTCTACGGCCACCGCC
GATGCGATGACCGACAGGCAAGACCGACGTGGCATCGTCGTCATCGGGCT
CAACGGCGCACTCCAGCGAACCATAGTCTTCGCGCCGCCAAAGGGCCTTA
AGGTAGGAAGCGTGAACAGGGCTTCCTCGGTCGGCGCGGGCATCGGAGGC
AAGGGCCAGAACGTATGCGTCGCCCTCCGACGCCTGGCGGAGGAAGACGG
GGGTCGGGGCGGCGGCGGGGGGGATGTGGACGTAACGCTCGCTCATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1138:22639..25937+

>mRNA_H-paniculata_contig1138.882.1 ID=mRNA_H-paniculata_contig1138.882.1|Name=mRNA_H-paniculata_contig1138.882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig1138:22639..25937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGTTCGGGCCGGGAAGGTTCTGCTATTGACAGCACTTCTCTTCGT
CGCAGCCCCTTTGTCTCCCACGCTTGCATTTTTATTGGGTTCGTTACAGC
TATCTACCGTCAAGCAGCACAAGTCGAAGACGAGCGCGTTCTTGCGCAGC
AGATGTGCGTTCGGGCCGGGAAGGTTCTGCTATTGACAGCACTTCTCTTC
GTCGCAGCCCCTTTGTCTCCCACGCTTGCATTTTTATTGGGTTCGTTACA
GCTATCTACCGTCAAGCAGCACAAGTCGAAGACGAGCGCGTTCTTGCGCA
GCAGGGCCTCAAACCAGCACCAGCTGGCCATGTCGCAGTTGGAAGTCACC
TCTACGGCCACCGCCGATGCGATGACCGACAGGCAAGACCGACGTGGCAT
CGTCGTCATCGGGCTCAACGGCGCACTCCAGCGAACCATAGTCTTCGCGC
CGCCAAAGGGCCTTAAGGTAGGAAGCGTGAACAGGGCTTCCTCGGTCGGC
GCGGGCATCGGAGGCAAGGGCCAGAACGTATGCGTCGCCCTCCGACGCCT
GGCGGAGGAAGACGGGGGTCGGGGCGGCGGCGGGGGGGATGTGGACGTAA
CGCTCGCTCATTTCGGCCTCAAACCAGCACCAGCTGGCCATGTCGCAGTT
GGAAGTCACCTCTACGGCCACCGCCGATGCGATGACCGACAGGCAAGACC
GACGTGGCATCGTCGTCATCGGGCTCAACGGCGCACTCCAGCGAACCATA
GTCTTCGCGCCGCCAAAGGGCCTTAAGGTAGGAAGCGTGAACAGGGCTTC
CTCGGTCGGCGCGGGCATCGGAGGCAAGGGCCAGAACGTATGCGTCGCCC
TCCGACGCCTGGCGGAGGAAGACGGGGGTCGGGGCGGCGGCGGGGGGGAT
GTGGACGTAACGCTCGCTCATTTC
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