mRNA_H-paniculata_contig32894.8820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: D8LNE0_ECTSI (eIF-2B GDP-GTP exchange factor subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE0_ECTSI) HSP 1 Score: 169 bits (428), Expect = 9.870e-50 Identity = 88/116 (75.86%), Postives = 100/116 (86.21%), Query Frame = 1
Query: 1 MDKEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDDSCKQQLLDR 348
MD+ +++++DDF R LSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELK+AIQLMED +E ++ DN STISLTSGCQLFLRHVSRFV+ESVGEEGFD+SCKQQLL R
Sbjct: 1 MDEGRKVISDDFARQLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKEAIQLMEDKMETDSPDNSR-------STISLTSGCQLFLRHVSRFVAESVGEEGFDESCKQQLLHR 109
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A835YUA3_9STRA (eIF-2B GDP-GTP exchange factor subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA3_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.300e-17 Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 7 KEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDDSCKQQLLDR 348
K++Q V +F ++L PET LPVAAIK LIGVI RS +TI GME EL+ L+ D++ STI+L+SGC+LFLR+V+R S+ F+D CK+Q+L R
Sbjct: 13 KQEQAVVQEFLQMLGPETTLPVAAIKVLIGVIARSNASTIMGMERELRQTADLLLDSVVLHAK-----------STIALSSGCELFLRYVTRC---SLDFPNFED-CKKQVLHR 111
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: W4GIQ1_9STRA (eIF-2B GDP-GTP exchange factor subunit alpha n=4 Tax=Aphanomyces TaxID=100860 RepID=W4GIQ1_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 3.300e-12 Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 22 VADDFRRLLS-PETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAI-QLMEDTLEKENADNR----HETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDD--SCKQQLLDR 348
V D+F L PE+A+ VA IK L GVI+ S +T+ ME+ L+DA QL ADN+ H T S+IS+T+GCQLFLR+V+R E FDD CK QL+DR
Sbjct: 8 VVDEFMGYLKDPESAIAVAVIKVLTGVIQHSEASTMMEMESALQDAASQLKAAAAANSPADNKNIATHSTSAQSLSSISVTAGCQLFLRYVTRCFLE------FDDFDQCKSQLIDR 118
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A7S3P834_9STRA (eIF-2B GDP-GTP exchange factor subunit alpha n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P834_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.040e-11 Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 10 EQQIVADDFRRLLSPE----------TALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDDSCKQQLLDR 348
E+ V D R LL TA+PVAAIKTL+GV++RS TI G++ ELK A +M + + A R S I+L+SGC+LFL++++R E E C+Q +L+R
Sbjct: 9 EEDAVLQDLRDLLKASEPKSLFDKSATAVPVAAIKTLLGVVQRSKAETIMGLQDELKRAADIMVKSFQDSTAGGR--------SHIALSSGCELFLKYITRTFLELPDFE----ECRQAILER 119
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A7S0C9D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D7_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.680e-9 Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 4 DKEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSR 282
++ Q I D + ALPVAAIK+L+GVI+RS T+ G++ ELK++ LM + + + H+ S ISL SGC+LF++HV+R
Sbjct: 56 EQTQTITPHDAQHESRSGIALPVAAIKSLLGVIQRSEANTMMGLQKELKESADLMLNYARQSS----HKLMLGGRSHISLASGCELFMKHVTR 144
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: T0R713_SAPDV (eIF-2B GDP-GTP exchange factor subunit alpha n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0R713_SAPDV) HSP 1 Score: 62.4 bits (150), Expect = 4.630e-9 Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 22 VADDFRRLLS-PETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDD--SCKQQLLDR 348
V DDF L P++A+ VA IK L GV++RS+ +T+ +E+ L +A + K AD T + S+IS+T+ CQLFLR+V+R E FDD CK QL+DR
Sbjct: 5 VVDDFLAYLQDPDSAIAVAVIKALTGVVQRSSASTMMEIESALTEAAAQL-----KAAADGPAPTQAL--SSISVTAVCQLFLRYVTRCFLE------FDDFDQCKSQLIDR 103
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A146L6Q9_LYGHE (eIF-2B GDP-GTP exchange factor subunit alpha n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L6Q9_LYGHE) HSP 1 Score: 59.3 bits (142), Expect = 5.610e-9 Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 52 PETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDDSCKQQLLDR 348
P A+ AAI+ L VIR ST TT+ G++ +LK++I+ ++ + +ISLT+GCQLF RHV+R E FDD CK++L++R
Sbjct: 27 PNIAVAAAAIQALTSVIRTSTATTVMGLQIQLKESIERIQRSR---------------PMSISLTAGCQLFERHVTRTSLEC----SFDD-CKRKLIER 105
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: D8T430_SELML (eIF-2B GDP-GTP exchange factor subunit alpha n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T430_SELML) HSP 1 Score: 61.6 bits (148), Expect = 7.990e-9 Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 1 MDKEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDDSCKQQLLDR 348
M++E+Q++ D R PE A VAAIK L VI+RS +T+ G+E ELK+A +++ + +D S+ISL++GC LF+R+V+R S E ++ K +L++R
Sbjct: 3 MEEEEQVIGDFNRWRQRPELAEAVAAIKALTAVIQRSQASTMMGLEIELKNASEML-------------KAWD--RSSISLSAGCDLFMRYVTR---TSALEYEDINAGKSRLIER 100
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A6G0WSA6_9STRA (eIF-2B GDP-GTP exchange factor subunit alpha n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSA6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 9.120e-9 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 43 LLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMED--TLEKENADNR----HETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDD--SCKQQLLDR 348
L P++A+ VA IK L GVI+RS +T+ +E+ L+DA ++ T D H T S IS+T+GCQLFLR+V+R E FDD CK QL+DR
Sbjct: 12 LKDPDSAVAVAVIKVLTGVIKRSKASTMMEIESALQDAASQLKSAATSYPPQTDGAKKPVHSTSAHTLSPISVTAGCQLFLRYVTRCFLE------FDDFDQCKAQLIDR 115
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A7S3XKU3_HETAK (eIF-2B GDP-GTP exchange factor subunit alpha (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKU3_HETAK) HSP 1 Score: 61.2 bits (147), Expect = 1.150e-8 Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 10 EQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDA-IQLMEDTLEKENADNRHETFDI*TSTISLTSGCQLFLRHVSRFVSESVGEEGFDDSCKQQLLDR 348
E V D+F LSPE A+PVAAIK ++ V++RST TT+ ++ EL++A +LM + N+ + I+L SG +LF ++V+R + + FD+ CKQ LL R
Sbjct: 16 EHPSVVDEFISYLSPEMAIPVAAIKAMLSVMQRSTATTMMELQTELREAKAELMTACDANDLLGNK--------TKIALESGSELFSKYVTRCFLDF---QDFDE-CKQALLQR 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32894.8820.1 >prot_H-paniculata_contig32894.8820.1 ID=prot_H-paniculata_contig32894.8820.1|Name=mRNA_H-paniculata_contig32894.8820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp MDKEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKback to top mRNA from alignment at H-paniculata_contig32894:162..1933- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32894.8820.1 ID=mRNA_H-paniculata_contig32894.8820.1|Name=mRNA_H-paniculata_contig32894.8820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1772bp|location=Sequence derived from alignment at H-paniculata_contig32894:162..1933- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32894:162..1933- >mRNA_H-paniculata_contig32894.8820.1 ID=mRNA_H-paniculata_contig32894.8820.1|Name=mRNA_H-paniculata_contig32894.8820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig32894:162..1933- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |