mRNA_H-paniculata_contig32887.8819.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32887.8819.1
Unique NamemRNA_H-paniculata_contig32887.8819.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32887.8819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32887contigH-paniculata_contig32887:818..1414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.5835161-UTR-H-paniculata_contig32887:817..8741622930014.5835161-UTR-H-paniculata_contig32887:817..874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32887 818..874 +
1691481110.4427772-UTR-H-paniculata_contig32887:817..8741691481110.4427772-UTR-H-paniculata_contig32887:817..874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32887 818..874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.598301-CDS-H-paniculata_contig32887:874..14141622930014.598301-CDS-H-paniculata_contig32887:874..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32887 875..1414 +
1691481110.4527702-CDS-H-paniculata_contig32887:874..14141691481110.4527702-CDS-H-paniculata_contig32887:874..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32887 875..1414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32887.8819.1prot_H-paniculata_contig32887.8819.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32887 875..1414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32887.8819.1

>prot_H-paniculata_contig32887.8819.1 ID=prot_H-paniculata_contig32887.8819.1|Name=mRNA_H-paniculata_contig32887.8819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MVVMPAPESSTVPTVSGAASSPPPGSKTSAVVWNLSASTSTVPTTSSSST
VPTSASATSPASFPSVPVHTRLLWACGPAPGATSPEPLADIAPSALSLIS
TIFSTYSVSSAGTCMYFPFVLLFVCGVAPLSTATARLAVPCCPACDRVPV
YGPCHLAVAGAGVRGPTVTVGLEPCCPAPE
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mRNA from alignment at H-paniculata_contig32887:818..1414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32887.8819.1 ID=mRNA_H-paniculata_contig32887.8819.1|Name=mRNA_H-paniculata_contig32887.8819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig32887:818..1414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACAATCCGTTGTCCGGGAAACTGAGCTTCCAGTTGCGGGACCAGGCT
CTCCGAGATGGTTGTGATGCCGGCGCCAGAGTCCAGCACGGTCCCTACGG
TCAGCGGTGCAGCATCGTCGCCGCCACCAGGCAGTAAGACATCGGCGGTG
GTGTGGAACTTGAGCGCCTCGACATCCACTGTGCCCACCACGTCGTCGTC
GTCGACCGTCCCAACCTCAGCATCCGCCACTTCACCCGCATCCTTCCCGT
CAGTGCCTGTCCACACTCGGTTACTATGGGCTTGCGGGCCTGCACCAGGC
GCCACCTCGCCTGAGCCGCTCGCCGACATTGCCCCTTCGGCGCTCAGCTT
GATTTCCACCATCTTCTCCACATATTCCGTTAGCTCAGCTGGAACATGCA
TGTATTTCCCCTTCGTCTTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCA
ACAGCAACGGCGCGACTCGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGT
CCCGGTGTACGGGCCCTGCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTG
GCCCGACCGTCACAGTCGGTCTCGAACCCTGCTGCCCTGCCCCAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32887:818..1414+

>mRNA_H-paniculata_contig32887.8819.1 ID=mRNA_H-paniculata_contig32887.8819.1|Name=mRNA_H-paniculata_contig32887.8819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig32887:818..1414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTGATGCCGGCGCCAGAGTCCAGCACGGTCCCTACGGTCAGCGG
TGCAGCATCGTCGCCGCCACCAGGCAGTAAGACATCGGCGGTGGTGTGGA
ACTTGAGCGCCTCGACATCCACTGTGCCCACCACGTCGTCGTCGTCGACC
GTCCCAACCTCAGCATCCGCCACTTCACCCGCATCCTTCCCGTCAGTGCC
TGTCCACACTCGGTTACTATGGGCTTGCGGGCCTGCACCAGGCGCCACCT
CGCCTGAGCCGCTCGCCGACATTGCCCCTTCGGCGCTCAGCTTGATTTCC
ACCATCTTCTCCACATATTCCGTTAGCTCAGCTGGAACATGCATGTATTT
CCCCTTCGTCTTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCAACAGCAA
CGGCGCGACTCGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGTCCCGGTG
TACGGGCCCTGCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTGGCCCGAC
CGTCACAGTCGGTCTCGAACCCTGCTGCCCTGCCCCAGAAATGGTTGTGA
TGCCGGCGCCAGAGTCCAGCACGGTCCCTACGGTCAGCGGTGCAGCATCG
TCGCCGCCACCAGGCAGTAAGACATCGGCGGTGGTGTGGAACTTGAGCGC
CTCGACATCCACTGTGCCCACCACGTCGTCGTCGTCGACCGTCCCAACCT
CAGCATCCGCCACTTCACCCGCATCCTTCCCGTCAGTGCCTGTCCACACT
CGGTTACTATGGGCTTGCGGGCCTGCACCAGGCGCCACCTCGCCTGAGCC
GCTCGCCGACATTGCCCCTTCGGCGCTCAGCTTGATTTCCACCATCTTCT
CCACATATTCCGTTAGCTCAGCTGGAACATGCATGTATTTCCCCTTCGTC
TTATTGTTCGTCTGCGGCGTCGCGCCGCTCTCAACAGCAACGGCGCGACT
CGCCGTCCCGTGCTGTCCCGCCTGCGATCGGGTCCCGGTGTACGGGCCCT
GCCACCTGGCCGTTGCCGGTGCTGGCGTCCGTGGCCCGACCGTCACAGTC
GGTCTCGAACCCTGCTGCCCTGCCCCAGAA
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