mRNA_H-paniculata_contig32870.8817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32870.8817.1
Unique NamemRNA_H-paniculata_contig32870.8817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL)

HSP 1 Score: 123 bits (309), Expect = 5.490e-32
Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            YR+++GS M+  +G  PD+ +A+   AR  E+P  E +   KR+  YLS   D+G++F  + +   L  +VDADWA D+ DRK T  +  K+ G  + WCSRKQ +V  SS EAE VA  +A KE ++L ++   +        T+ EDN   I++S+
Sbjct:   13 YRELIGSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTTGFFIKVYGNVVQWCSRKQAIVALSSCEAEYVAVCDAAKEVLWLLKVMNDLNLQVQLPVTMLEDNSGCISVSE 170          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 125 bits (315), Expect = 1.120e-31
Identity = 68/158 (43.04%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            ++ +VGS  Y  T   PDL Y+V+  +R ME+P  +     KR+  Y+      GI++  +  G  L GFVD+D+A DV+DRK T+ Y+F L GGA++W S+KQ +VT S+TEAE VA      + ++LR + G IG+     TTLF DN S I LSK
Sbjct:  156 FKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRY-KQGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSK 311          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI)

HSP 1 Score: 129 bits (324), Expect = 1.180e-31
Identity = 64/158 (40.51%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            YR+ VGS M+ +  + PD+ +AV+ A++ + +     +   KR+F+YL    DLGI++    +   L GF DAD+A D+E R+ T  Y+F L  G + W SR+Q +VT S+TEAE +A   A KE V+LR L   +G+ C   T L+ DN SAI ++K
Sbjct: 1392 YREAVGSLMFVAIVSRPDIAFAVNTASKFLNNHDQSHWQAVKRIFAYLVGTADLGIEYRSSGSESKLVGFSDADYAGDLETRRSTTGYLFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAK 1549          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A139WJX6_TRICA (Copia protein-like Protein n=1 Tax=Tribolium castaneum TaxID=7070 RepID=A0A139WJX6_TRICA)

HSP 1 Score: 127 bits (320), Expect = 2.870e-31
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            YR+ +G  M+A+  A PD+ YAV+  +R   +P +   +  KR+F YL    +LGI +   +N   L G+ DAD+A D++ RK T+ ++FKL  GAI WCSR+Q  ++ S+TEAE VA  EA KE V++  L   +G  C G   L  DN SAI L K
Sbjct:  425 YREAIGCLMFAAISARPDIMYAVNVVSRYQNNPTIAHVNAVKRIFKYLKGTKELGILY---NNSGKLIGYSDADYANDIDSRKSTSGFVFKLGDGAITWCSRRQRCISLSTTEAEYVAASEATKEAVWISGLLSEVGEKC-GGVALCVDNQSAIKLVK 578          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A1X7STY0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7STY0_AMPQE)

HSP 1 Score: 124 bits (311), Expect = 4.300e-31
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    4 EYRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            +Y+  VG Q+Y ST   PD+ +AV   A+   DP ++ +   K +  YL+     G+ F  K     +EG+ DADWA D++DRK    Y+FKL+G +I+W SRKQ  V  S+ EAE ++   AG+E ++L +L   +  G     TL+EDN +AI LSK
Sbjct:  178 KYQSAVGRQLYLSTTTRPDIAFAVSSVAKYTSDPTVQHWKAVKHIIRYLTGTVGYGLMFRKKKTAE-VEGYSDADWAGDIDDRKSILGYLFKLSGASISWRSRKQSCVALSTAEAEYISLATAGQEAIWLSQLINELKRGTEKPVTLYEDNQAAICLSK 335          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 124 bits (312), Expect = 1.050e-30
Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSKE 483
            YR+ +GS MYA+ G  PD+ +A+   A+  ++P    +   KR+F YL    +L +++GG   G  LEG+VDAD A   E R     Y+F ++GGA++W S+KQ LVT S+TEAE VA   A KE +++R L G +     G TTL+ D+ SAI L+K+
Sbjct:  247 YREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRG--LEGYVDADGASQ-EHRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKD 402          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 122 bits (305), Expect = 1.440e-30
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            Y+ ++GS MY  T   PD+ YAV   +R ME P     +  KR+  Y+    D G+ F  + +G G  G+ D+D+A D++DRK T+ +IF LN GAI+W S+KQ +VT SSTEAE VA   +  + ++LR++   +G    G TT++ DNIS I LS+
Sbjct:  100 YKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSR 255          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A034V8I0_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034V8I0_BACDO)

HSP 1 Score: 125 bits (313), Expect = 2.060e-30
Identity = 67/160 (41.88%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    1 SEYRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSK 480
            SEY+ ++G  MY S    PD+ ++V + A+R  DP  E  +  K +  YL++  DL +++   + G  ++GFVDADW  D+ DRK  + Y F L+G AI W S+KQ  V  SSTEAE VA  E  KE ++LR L   IG      T ++ DN+SA +LSK
Sbjct:  394 SEYQSLIGELMYLSVCTRPDIMHSVSKLAQRNADPHTEHVAGVKHILRYLASTADLKLRY--SACGKPVQGFVDADWGNDMMDRKSFSGYAFVLSGSAITWQSKKQQTVALSSTEAEYVALAEGVKEALFLRNLLNEIGCEQQEPTIIYGDNLSAQHLSK 551          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 125 bits (314), Expect = 2.590e-30
Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSKE 483
            YR+ +GS MYA+ G  PD+ +A+   A+  ++P    +   KR+F YL    +L +++GG   G  LEG+VDAD A   E R     Y+F ++GGA++W S+KQ LVT S+TEAE VA   A KE +++R+L G +     G TTL+ D+ SAI L+K+
Sbjct: 1264 YREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRG--LEGYVDADGASQ-EHRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRQLLGEVFRPLDGPTTLYSDSQSAIALTKD 1419          
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Match: A0A369JJ40_HYPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JJ40_HYPMA)

HSP 1 Score: 125 bits (313), Expect = 3.540e-30
Identity = 70/159 (44.03%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    7 YRDMVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPDLGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRKQ*LVTWSSTEAEDVATGEAGKETVYLRELQGSIGFGCMGSTTLFEDNISAINLSKE 483
            YR+ VGS MYA+ G  PD+ +A   AA+  ++P    +   KR+F YL    DL + +G +  G  LEGFVDAD A   + R+  + Y+F ++GGA++W S+KQ LVT S+TEAE VA   A KE ++LR L G +       TTLF D+ SAI L+K+
Sbjct: 1358 YREAVGSLMYAAMGTRPDIAFATSTAAQFSDNPGWVHWEAVKRIFRYLLGTKDLELVYGAEQKG--LEGFVDADGASQ-DHRRAISGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAAMHAAKEAMWLRRLIGELFRPLSEPTTLFSDSKSAIALTKD 1513          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32870.8817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182G509_AEDAL5.490e-3237.97Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A6D2JBX5_9BRAS1.120e-3143.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7KRG1_LASNI1.180e-3140.51Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A139WJX6_TRICA2.870e-3142.41Copia protein-like Protein n=1 Tax=Tribolium casta... [more]
A0A1X7STY0_AMPQE4.300e-3139.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K468_9APHY1.050e-3042.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009AB427F1.440e-3041.77uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A034V8I0_BACDO2.060e-3041.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A2R6PCF8_9APHY2.590e-3042.14Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A369JJ40_HYPMA3.540e-3044.03Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32870contigH-paniculata_contig32870:619..1101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score88.2
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog400682.PAC_15702290
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BS5J@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32870.8817.1prot_H-paniculata_contig32870.8817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32870 634..939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.6794088-UTR-H-paniculata_contig32870:618..6331622930013.6794088-UTR-H-paniculata_contig32870:618..633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32870 619..633 +
1691481110.3586962-UTR-H-paniculata_contig32870:618..6331691481110.3586962-UTR-H-paniculata_contig32870:618..633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32870 619..633 +
1622930013.7014005-UTR-H-paniculata_contig32870:939..11011622930013.7014005-UTR-H-paniculata_contig32870:939..1101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32870 940..1101 +
1691481110.375176-UTR-H-paniculata_contig32870:939..11011691481110.375176-UTR-H-paniculata_contig32870:939..1101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32870 940..1101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.6899667-CDS-H-paniculata_contig32870:633..9391622930013.6899667-CDS-H-paniculata_contig32870:633..939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32870 634..939 +
1691481110.3677318-CDS-H-paniculata_contig32870:633..9391691481110.3677318-CDS-H-paniculata_contig32870:633..939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32870 634..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32870.8817.1

>prot_H-paniculata_contig32870.8817.1 ID=prot_H-paniculata_contig32870.8817.1|Name=mRNA_H-paniculata_contig32870.8817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MVGSQMYASTGATPDLEYAVHQAARRMEDPCLEDFSTCKRLFSYLSTVPD
LGIKFGGKSNGHGLEGFVDADWAEDVEDRKCTARYIFKLNGGAINWCSRK
Q*
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mRNA from alignment at H-paniculata_contig32870:619..1101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32870.8817.1 ID=mRNA_H-paniculata_contig32870.8817.1|Name=mRNA_H-paniculata_contig32870.8817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig32870:619..1101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGAATACAGAGACATGGTTGGATCACAAATGTACGCCTCCACAGGAGC TACCCCTGATCTAGAATACGCGGTACACCAAGCAGCACGTCGTATGGAGG ACCCATGTCTGGAAGACTTCAGTACATGCAAGCGCCTTTTTAGTTATCTC AGTACTGTGCCTGACCTCGGCATTAAGTTCGGCGGTAAGAGTAATGGTCA CGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACA GAAAGTGCACAGCAAGATACATTTTCAAGCTGAACGGTGGTGCAATAAAT TGGTGCTCTAGGAAGCAATAGTTAGTCACGTGGTCCAGTACAGAGGCAGA GGACGTTGCTACAGGAGAAGCAGGAAAGGAGACGGTATATCTTAGGGAGT TACAAGGATCGATAGGTTTCGGATGCATGGGGAGCACGACATTATTTGAG GACAATATATCAGCTATCAATCTCAGTAAGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32870:619..1101+

>mRNA_H-paniculata_contig32870.8817.1 ID=mRNA_H-paniculata_contig32870.8817.1|Name=mRNA_H-paniculata_contig32870.8817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig32870:619..1101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGGATCACAAATGTACGCCTCCACAGGAGCTACCCCTGATCTAGA
ATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCTGGAAG
ACTTCAGTACATGCAAGCGCCTTTTTAGTTATCTCAGTACTGTGCCTGAC
CTCGGCATTAAGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATT
CGTTGATGCCGATTGGGCGGAAGATGTCGAGGACAGAAAGTGCACAGCAA
GATACATTTTCAAGCTGAACGGTGGTGCAATAAATTGGTGCTCTAGGAAG
CAATAGATGGTTGGATCACAAATGTACGCCTCCACAGGAGCTACCCCTGA
TCTAGAATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTC
TGGAAGACTTCAGTACATGCAAGCGCCTTTTTAGTTATCTCAGTACTGTG
CCTGACCTCGGCATTAAGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGA
AGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACAGAAAGTGCA
CAGCAAGATACATTTTCAAGCTGAACGGTGGTGCAATAAATTGGTGCTCT
AGGAAGCAATAG
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