mRNA_H-paniculata_contig32861.8814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.450e-22 Identity = 54/146 (36.99%), Postives = 91/146 (62.33%), Query Frame = 1
Query: 13 DEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGE---RHTVPSTLAEDQVPSQQTSSAEVPVKAR---EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
D+ PPSL++R++ K G +R +MVLP+SW L L L +G + +L D+ + +T+ V EDL +W++++ + +G+ V N ++ALEGAL+IRE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 350 DDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQGRDPVEVVLRKSLHPDRGDATETAGGNTVVYQGITVEDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFLDVLWLARILKPLLNHK 495
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.630e-22 Identity = 59/159 (37.11%), Postives = 90/159 (56.60%), Query Frame = 1
Query: 10 ADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRG--ERHTVPSTLAEDQVPS-----QQTSSAEVPVKAR-----------EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
ADE+ P+L++R++ K G +R +MVLP+SW AL+ L L G +H ++ D V T E A E+L ++W +R+ + + V NPE+ALEGAL+IRE++G+++ +VFLDV WLA+VL+P+LNHK
Sbjct: 309 ADENSSPNLLHRLVNKRDGSGLRGAQMVLPRSWDIALTVLEALEHGWQAQHRCQTSQRVDPVEMIVRRLADTDGGEAVELAEAKGDAYHGITMEELKAKWNETVRELAKRDIAVTNPENALEGALSIREFDGSLVRHEMFVFLDVVWLARVLKPLLNHK 467
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.640e-22 Identity = 53/147 (36.05%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 13 DEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGERHTVPSTLAEDQVPSQQTSSAEVPVKAR-------EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
D+ PPS ++R++ K G +R + VLP+SW AL+ L L G R V + L + P + ++ K E+L ++W+ + + +G+TV N ++ALEGAL++RE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 235 DDQPPPSFLHRLVNKPDGRGLRGTQTVLPRSWDIALTVLEALEHG-RDPVEAVLGKSPDPDGEDAAETAGGKTDVYQGITVEELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFLDVVWLARILKPLLNHK 380
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.970e-22 Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 1
Query: 10 ADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGERHTVPSTLAEDQVPSQ----QTSSAEVPVKAR---EDLLSEWRRVI---RDKGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
AD + PSL++R++ K G +R +MVLP+SW AL+ L L G R V L + P + +T+ E + EDL +W+ + G+TV N ++ALEGAL IRE++G+++ ++FLDV WLAK+L+P+LNHK
Sbjct: 399 ADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHG-RDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFIFLDVVWLAKILKPLLNHK 545
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 100 bits (249), Expect = 6.930e-22 Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 28 PSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGERHTVPSTLAEDQVPSQQTSSAEVPVKAR---EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
PSLI R++ K +R +MVLP+SW AL+FL L G L T +A+ V E+L ++W+ + +G+TV N E+ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 556 PSLIYRLVNKPDKGGLRGVQMVLPRSWDIALTFLDSLEHGRDPVEMVILKSPDSDRGATETAKTTVYQGITVEELSAKWQETVDGLGRRGITVTNAENALEGALSIREFDGSLVPHEKFVFLDVVWLARILKPLLNHK 693
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.740e-21 Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 13 DEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGER--HTVPSTLAE-DQVPSQQTSSAEVPVKAR---EDLLSEWRRVI---RDKGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
D+ PP L++R++ K G +R +MVLP+SW AL+ L L RG V LAE D+ + +T++ + V E L +W+ + +G+ V N ++ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 444 DDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAVVGLARRGVNVTNAKNALEGALSIREFDGSLVRHEMFVFLDVVWLARILKPLLNHK 589
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.270e-21 Identity = 54/147 (36.73%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 13 DEDRP-PSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGE---RHTVPSTLAEDQVPSQQTSSAEVPVKAR---EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
++D+P PS ++R++ K G +R +MVLP+SW AL+ L L G + +L D+ + +T+ + V E+L ++W+ + + +G+TV N ++ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 61 EDDQPSPSFLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLHKSLDPDRGNATKTAEGKTDVYQGITVEELGTKWQGTVDELERRGITVTNAKNALEGALSIREFDGSLVRRDKFVFLDVVWLARILKPLLNHK 207
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 3.110e-21 Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 28 PSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGERHTVPSTLAEDQVPSQQTSSAEVPVKAR--------EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
PSL+ R++ K +R +MVLP+SW AL+FL L G RH V + + P + + E E+L + W+ + + +G+TV N E+ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 385 PSLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYG-RHPVEMVMLKS--PDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFLDVVWLARILKPLLNHK 524
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 8.240e-21 Identity = 55/147 (37.41%), Postives = 88/147 (59.86%), Query Frame = 1
Query: 13 DEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGERHTVPSTLAE--DQVPSQQTSSAEVPVK-----AREDLLSEWRRV---IRDKGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
D++ PSL++R++ K G +R +MV+P+SW AL+ L L RG R V + + D T +A EDL ++W+ + + +TV N ++ALEGAL IRE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 544 DDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERG-RDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKWQEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHK 689
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.900e-20 Identity = 56/148 (37.84%), Postives = 90/148 (60.81%), Query Frame = 1
Query: 13 DEDRP-PSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGERHTVPSTLAEDQVPSQQTSSAEVPVKAR-------EDLLSEWRRVIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 423
++D+P PS ++R++ K G +R +MVLP+SW AL+ L L G R V L + P + E KA E+L ++W+ + + +G+TV N +ALEGAL+IRE++G+++ +VFLDV WL+++L+P+LNHK
Sbjct: 614 EDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDVALAVLEALEHG-RDPVEVVLRKSPEPDR-GDETETGGKADVYQGITVEELGTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFLDVVWLSRILKPLLNHK 759 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32861.8814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32861.8814.1 >prot_H-paniculata_contig32861.8814.1 ID=prot_H-paniculata_contig32861.8814.1|Name=mRNA_H-paniculata_contig32861.8814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp TGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDLSRGEback to top mRNA from alignment at H-paniculata_contig32861:133..2432- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32861.8814.1 ID=mRNA_H-paniculata_contig32861.8814.1|Name=mRNA_H-paniculata_contig32861.8814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2300bp|location=Sequence derived from alignment at H-paniculata_contig32861:133..2432- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32861:133..2432- >mRNA_H-paniculata_contig32861.8814.1 ID=mRNA_H-paniculata_contig32861.8814.1|Name=mRNA_H-paniculata_contig32861.8814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig32861:133..2432- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |