prot_H-paniculata_contig3286.8812.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3286.8812.1
Unique Nameprot_H-paniculata_contig3286.8812.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length937
Homology
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BLAST of mRNA_H-paniculata_contig3286.8812.1 vs. uniprot
Match: D7G361_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G361_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.970e-23
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0 
Query:    1 MSTSTGRPRPFLDGVFRTACNYCVKSKRGCSGGNPCEQCEKRGKSCTYAQRRMSGPRGRP-SGHSNRVRS 69
            M+TSTGRPRPFL+GVFRTACNYCV SKRGCSGG PC+QCEKRGK C YAQRR SGPR RP SG S++ RS
Sbjct:    1 MTTSTGRPRPFLNGVFRTACNYCVSSKRGCSGGEPCDQCEKRGKPCIYAQRRKSGPRSRPASGRSSKGRS 70
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BLAST of mRNA_H-paniculata_contig3286.8812.1 vs. uniprot
Match: A0A6H5KZD2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.600e-11
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:    6 GRPRPFLDGVFRTACNYCVKSKRGCSGGNPCEQCEKRGKSCTYAQRRMSGPRGRP 60
            G+PRP L GVFR AC+YCV+SKRGC+GG PC          TY+QRR SGPRGRP
Sbjct:    9 GKPRPLLAGVFRKACDYCVRSKRGCNGGTPCXXXXXXXXXXTYSQRRKSGPRGRP 63
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BLAST of mRNA_H-paniculata_contig3286.8812.1 vs. uniprot
Match: A0A836CIK1_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.510e-7
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0 
Query:    9 RPFLDGVFRTACNYCVKSKRGCSGGNPCEQC--EKRGKSCTYAQRRMSGPRGRPSG 62
            R  + GV + AC +CVK KR C GG+PCEQC   +RG  C Y QRR SGP+ R  G
Sbjct:    3 RKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGG 58
[Close]
BLAST of mRNA_H-paniculata_contig3286.8812.1 vs. uniprot
Match: A0A836CJ95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ95_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.980e-5
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 0 
Query:   15 VFRTACNYCVKSKRGCSGGNPCEQC--EKRGKSCTYAQRRMSGPRGRPSG 62
            + + AC +CVK KR C GG+PCEQC    RG  C Y QRR SGPR R  G
Sbjct:   31 LLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRARVVG 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3286.8812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G361_ECTSI3.970e-2380.00Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
A0A6H5KZD2_9PHAE3.600e-1163.64Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CIK1_9STRA7.510e-753.57Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A836CJ95_9STRA3.980e-556.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 14..57
e-value: 3.5E-4
score: 29.9
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 18..52
e-value: 1.4E-6
score: 28.3
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 19..48
score: 9.083
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 18..94
e-value: 2.4E-6
score: 29.8
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 16..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3286contigH-paniculata_contig3286:3484..8786 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3286.8812.1mRNA_H-paniculata_contig3286.8812.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3286 2460..10503 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3286.8812.1 ID=prot_H-paniculata_contig3286.8812.1|Name=mRNA_H-paniculata_contig3286.8812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=937bp
MSTSTGRPRPFLDGVFRTACNYCVKSKRGCSGGNPCEQCEKRGKSCTYAQ
RRMSGPRGRPSGHSNRVRSRARARRQRRAEALKAQQDAMVTAGEGGAPSS
LTYEHQQGQQDVSGGNESTFGSGGGGGMVDGGAVGIVTAVESFSSRLAGF
EGCVPDGGIPVGFGNNSGGVGGGGRGRSSGRSNRSVGPSGDVRALVGSND
WESSYSKTDSEGVPSDGDGGWDSEVDIPLDSSRSVVRQPQPAAAVAATTA
TAVAPSRASVAPNGNKPFGFRGTSITRQLSDRDVRAPRRPGLSSPPFSAA
KRQSVSISSAHVNPDDSDFEADKAERIMEDDSGEADNSKNAATLCTFPKP
HMFLDIPKHQHRQVPLSRTITDSPRSSSYSLSPPGSFVLSPTAVTSTTAA
TTFATAPFAAAPFAASSSRSAAATAAAVATPRRGEILSVPEPNPRLLLSA
DLPTVLPSRKDSNAGSNCGGGGGGGGSNNSSRRVIINTGNDTDISSSDRN
VRHDDMQGKKRQQRLLQQQQQKQQDCAFVGGGGFGKEILPYSSSSSSASS
SKSISPVPMSSSATVSTPSLIPYDEFESGAAPSQSQKVATLVAWGSHSSF
DEQAPVAGLGFNTADSGDQDNAISSSLLNSSNKRKLDEDAAATAVVSSAP
TVVSATVGQMNQRNGCGDGRRPQQLQRQNAQNELAGGPANATRTSMAQLV
HEFPDWSKASAPATVAPTSVQGCGSNSGSNTVAHGYDYSRSKHTAIATST
STAAASLTGLDVGSAFPIWTDEPEPRGRVIVQAFPSAAGISAPATTAASS
VTCFPSHRLHSTGPMKASSDLSWMAATNSHPTAPRMSSEGAPMTSSPTVA
ATTPRRTVEDRSQFNRSASPATSLSGTVLAGTDLWKEFVDLECANMASRA
TPITREDSLIRALEVVGTEMTLTPPPCESHPFAGLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf