mRNA_H-paniculata_contig32851.8811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32851.8811.1
Unique NamemRNA_H-paniculata_contig32851.8811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: D7G6M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M4_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 8.650e-54
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:    1 QVDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            +VDSRPTARIPIVIF DG+SGLDCDISVMNPLAVRNT L+KAYSVADPRVKELAYV+K WAKRRWVNNASEGTLSSYGYLLCL+H+LQ+R+PP+VPNLQ
Sbjct:  382 KVDSRPTARIPIVIFNDGASGLDCDISVMNPLAVRNTRLMKAYSVADPRVKELAYVLKRWAKRRWVNNASEGTLSSYGYLLCLLHFLQTRNPPVVPNLQ 480
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: A0A835YMU6_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMU6_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.430e-42
Identity = 73/98 (74.49%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    4 VDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            VD RPTARIPIV+FKD + GL+CDISVMNPLAVRNT LL+ Y++ADPRV+ LA+V+KHWAK+R +N  SEGTLSSYGYLL L+HYLQ+R+PP+VPNLQ
Sbjct: 1500 VDCRPTARIPIVLFKDPAYGLECDISVMNPLAVRNTDLLRTYALADPRVRPLAFVVKHWAKQRQINCPSEGTLSSYGYLLLLLHYLQTRNPPVVPNLQ 1597
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: A0A7S2CLX1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLX1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.780e-42
Identity = 68/99 (68.69%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 QVDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            +V++R TARIPIV+F+D  SGLDCDIS+ NPLAVRNT+LL AY+  DPRVK LA+ +KHWA+RR +N+ S+GTLSSYGYLLC++H+LQ+RSPP++PNLQ
Sbjct:  265 EVEARSTARIPIVMFQDTVSGLDCDISIFNPLAVRNTNLLAAYARIDPRVKALAFTVKHWARRRHINSPSQGTLSSYGYLLCVIHFLQTRSPPVIPNLQ 363
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: A0A067BW34_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BW34_SAPPC)

HSP 1 Score: 134 bits (338), Expect = 1.300e-34
Identity = 63/95 (66.32%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:   13 RPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            R TARIPIV+FKD +SG+DCDI V N LA+RNT LL+ Y++ADPRV+ LA+ IK+W K R +NNA++GTLSSYGYLL L+HYLQ  SPP++P LQ
Sbjct:  386 RLTARIPIVMFKDATSGIDCDICVENALALRNTRLLRTYALADPRVRILAFFIKYWVKTREMNNAAQGTLSSYGYLLLLIHYLQRTSPPVLPVLQ 480
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: K8YXG6_NANGC (Nucleotidyltransferase-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YXG6_NANGC)

HSP 1 Score: 131 bits (329), Expect = 3.020e-34
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    4 VDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSP------------PLVPNLQV 300
            V +RPTARIPIV+F++  +GLDCDISV NPLA+RNT LL  YS  DPRV+ LAY++KHWA+ R +NNAS GTLSSY Y+L ++H+LQ+ +             PLVPNLQ+
Sbjct:   96 VVARPTARIPIVLFREPGTGLDCDISVENPLALRNTQLLHEYSQVDPRVRALAYIVKHWARARKINNASGGTLSSYAYILMVLHFLQTAAAAVPSTPDTPCYAPLVPNLQL 206
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: W4G2H7_9STRA (TUTase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2H7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.040e-33
Identity = 57/96 (59.38%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:   10 SRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            +R TARIPIV+F+D  S ++CD+ V N LA+RNT LL+ Y++ADPRV++LAY++KHW K+R +NNA++GTLSSYGY++ L+HYLQ   PP++P LQ
Sbjct:  430 ARLTARIPIVMFRDIPSTIECDVCVENALALRNTRLLRTYALADPRVRQLAYLLKHWVKQRGINNAADGTLSSYGYIIMLLHYLQRTEPPVIPVLQ 525
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: W4G1U7_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1U7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.530e-33
Identity = 57/96 (59.38%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:   10 SRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            +R TARIPIV+F+D  S ++CD+ V N LA+RNT LL+ Y++ADPRV++LAY++KHW K+R +NNA++GTLSSYGY++ L+HYLQ   PP++P LQ
Sbjct:  430 ARLTARIPIVMFRDIPSTIECDVCVENALALRNTRLLRTYALADPRVRQLAYLLKHWVKQRGINNAADGTLSSYGYIIMLLHYLQRTEPPVIPVLQ 525
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: A0A1V9ZNC0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZNC0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.930e-33
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   13 RPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQ 297
            R TARIPIV+F D +SG+DCD+ V N LA+RNT LL+ Y++ADPRV+ LAY IK W K R +NNA++GTLSSYGYLL L+HYLQ  SPP++P LQ
Sbjct:  373 RLTARIPIVMFHDVTSGIDCDVCVENALALRNTRLLRTYALADPRVRILAYFIKAWVKAREMNNAAQGTLSSYGYLLMLIHYLQRTSPPVLPVLQ 467
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: W7TXG0_9STRA (PAP/25A-associated n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXG0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.820e-33
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    4 VDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSP------------PLVPNLQV 300
            V +RPTARIPIV+F++  +GLDCDISV NPLA+RNT LL  YS  DPRV+ LAY++KHWA+ R +NNAS GTLSSY Y+L ++H+LQ+ +             PLVPNLQ+
Sbjct:  563 VVARPTARIPIVLFREPGTGLDCDISVENPLALRNTQLLHEYSRVDPRVRALAYIVKHWARARKINNASGGTLSSYAYILMVLHFLQTAAAAVPSTPDTPCYAPLVPNLQL 673
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BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Match: A0A4D9DCB2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCB2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.900e-33
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:    4 VDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRVKELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQ------SRSP------PLVPNLQV 300
            V +RPTARIPIV+F++  +GLDCDISV NPLA+RNT LL  YS  DPRV+ LAY++KHWA+ R +NNAS GTLSSY Y+L ++H+LQ      S +P      PLVPNLQ+
Sbjct:  992 VVARPTARIPIVLFREPGTGLDCDISVENPLALRNTQLLHEYSRVDPRVRALAYIVKHWARARKINNASGGTLSSYAYILMVLHFLQTAAAAVSSTPDNPCYAPLVPNLQL 1102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32851.8811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6M4_ECTSI8.650e-5487.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMU6_9STRA1.430e-4274.49WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2CLX1_9STRA3.780e-4268.69Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A067BW34_SAPPC1.300e-3466.32Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
K8YXG6_NANGC3.020e-3457.66Nucleotidyltransferase-like protein n=1 Tax=Nannoc... [more]
W4G2H7_9STRA1.040e-3359.38TUTase domain-containing protein n=1 Tax=Aphanomyc... [more]
W4G1U7_9STRA2.530e-3359.38Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A1V9ZNC0_9STRA2.930e-3365.26Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
W7TXG0_9STRA3.820e-3357.66PAP/25A-associated n=1 Tax=Nannochloropsis gaditan... [more]
A0A4D9DCB2_9STRA3.900e-3359.46Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32851contigH-paniculata_contig32851:1703..2421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue5.1e-45
Seed eggNOG ortholog2880.D7G6M4
KEGG koko:K13291
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016074,GO:0016180,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031325,GO:0034470,GO:0034641,GO:0034660,GO:0043144,GO:0043170,GO:0043628,GO:0043629,GO:0043631,GO:0044237,GO:0044238,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050265,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065007,GO:0070569,GO:0070920,GO:0071050,GO:0071076,GO:0071704,GO:0080090,GO:0090065,GO:0090304,GO:0097159,GO:0140098,GO:1900368,GO:1900370,GO:1901360,GO:1901363,GO:1903705
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.000575-CDS-H-paniculata_contig32851:1702..18941622930013.000575-CDS-H-paniculata_contig32851:1702..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32851 1703..1894 -
1691481110.2175703-CDS-H-paniculata_contig32851:1702..18941691481110.2175703-CDS-H-paniculata_contig32851:1702..1894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32851 1703..1894 -
1622930013.0148122-CDS-H-paniculata_contig32851:2298..24211622930013.0148122-CDS-H-paniculata_contig32851:2298..2421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32851 2299..2421 -
1691481110.2350962-CDS-H-paniculata_contig32851:2298..24211691481110.2350962-CDS-H-paniculata_contig32851:2298..2421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32851 2299..2421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32851.8811.1prot_H-paniculata_contig32851.8811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32851 1703..2421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32851.8811.1

>prot_H-paniculata_contig32851.8811.1 ID=prot_H-paniculata_contig32851.8811.1|Name=mRNA_H-paniculata_contig32851.8811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
QVDSRPTARIPIVIFKDGSSGLDCDISVMNPLAVRNTHLLKAYSVADPRV
KELAYVIKHWAKRRWVNNASEGTLSSYGYLLCLVHYLQSRSPPLVPNLQV
YTRL*
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mRNA from alignment at H-paniculata_contig32851:1703..2421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32851.8811.1 ID=mRNA_H-paniculata_contig32851.8811.1|Name=mRNA_H-paniculata_contig32851.8811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=719bp|location=Sequence derived from alignment at H-paniculata_contig32851:1703..2421- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGATAGCAGGCCGACGGCGCGTATCCCGATCGTCATTTTCAAGGA
CGGTAGTTCCGGGTTGGATTGCGATATCTCCGTGATGAACCCCTTGGCTG
TGCGCAACACCCACCTGCTCAAGGTGATCATTAAGAGATATGACCAGGCG
TGTGTTGGGTCCGTTGTCAGCGCTCTGGTCGCACCGCGCTATGCTTGTCG
TTGTCGTGATTGCGTTGTAAGGTCAAAACGGCGCCTGCAAAACGTATTTA
TGCACTGTGCTGTGGACTGTAGAGTATAATGCATATGGCCCGAATGAAGG
ATTCATTCATTGTATGTAACTCTTCCGCGACGCCAGGTGGAGAGAATTTC
GATTGCTGCTACTGCAAGCGTTGCCATGCACGAGCGCTGGTGTAACGCTA
CTAACTGCTAACACTAGCGTTCTCCCTCCCTCGCCTGCTTTCCTCCAACC
TTTGTGCTGACTGCCATCTTATCGCACTGTACGCTGCCCATTGGTGCAAT
GGTCGAACTGGCAAATGACTGTCTTAGGCGTACTCTGTGGCGGACCCGCG
GGTGAAAGAGCTGGCGTACGTGATAAAGCACTGGGCAAAGCGGCGGTGGG
TCAACAATGCAAGCGAGGGAACGCTGTCCTCTTACGGGTACCTGCTGTGT
CTTGTGCATTACTTGCAATCCAGGAGCCCTCCTCTGGTACCCAATTTGCA
GGTATATACGCGGTTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32851:1703..2421-

>mRNA_H-paniculata_contig32851.8811.1 ID=mRNA_H-paniculata_contig32851.8811.1|Name=mRNA_H-paniculata_contig32851.8811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig32851:1703..2421- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGATAGCAGGCCGACGGCGCGTATCCCGATCGTCATTTTCAAGGA
CGGTAGTTCCGGGTTGGATTGCGATATCTCCGTGATGAACCCCTTGGCTG
TGCGCAACACCCACCTGCTCAAGCAGGTGGATAGCAGGCCGACGGCGCGT
ATCCCGATCGTCATTTTCAAGGACGGTAGTTCCGGGTTGGATTGCGATAT
CTCCGTGATGAACCCCTTGGCTGTGCGCAACACCCACCTGCTCAAGGCGT
ACTCTGTGGCGGACCCGCGGGTGAAAGAGCTGGCGTACGTGATAAAGCAC
TGGGCAAAGCGGCGGTGGGTCAACAATGCAAGCGAGGGAACGCTGTCCTC
TTACGGGTACCTGCTGTGTCTTGTGCATTACTTGCAATCCAGGAGCCCTC
CTCTGGTACCCAATTTGCAGGTATATACGCGGTTGTAAGCGTACTCTGTG
GCGGACCCGCGGGTGAAAGAGCTGGCGTACGTGATAAAGCACTGGGCAAA
GCGGCGGTGGGTCAACAATGCAAGCGAGGGAACGCTGTCCTCTTACGGGT
ACCTGCTGTGTCTTGTGCATTACTTGCAATCCAGGAGCCCTCCTCTGGTA
CCCAATTTGCAGGTATATACGCGGTTGTAA
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